Wall clock time and date at job start Tue Mar 31 2020 15:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46946 * 239.99794 * 2 1 3 5 5 C 1.50701 * 109.47015 * 59.99776 * 4 2 1 6 6 H 1.07995 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99563 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00656 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99519 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47324 * 90.00337 * 9 7 5 11 11 H 1.48501 * 109.46733 * 209.99753 * 9 7 5 12 12 H 1.48493 * 109.47446 * 330.00014 * 9 7 5 13 13 C 1.52996 * 109.47135 * 119.99807 * 2 1 3 14 14 O 1.45206 * 109.47092 * 300.00244 * 13 2 1 15 15 C 1.34743 * 116.99949 * 180.02562 * 14 13 2 16 16 O 1.21504 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.47515 * 119.99814 * 179.97438 * 15 14 13 18 18 C 1.40310 * 120.49733 * 179.97438 * 17 15 14 19 19 C 1.37980 * 118.35133 * 180.02562 * 18 17 15 20 20 C 1.39195 * 119.26259 * 359.97438 * 19 18 17 21 21 N 1.39387 * 119.52218 * 180.02562 * 20 19 18 22 22 C 1.36718 * 125.69356 * 359.69237 * 21 20 19 23 23 C 1.34766 * 108.18919 * 179.83087 * 22 21 20 24 24 C 1.41022 * 107.50148 * 0.42930 * 23 22 21 25 25 C 1.34766 * 107.49903 * 359.73003 * 24 23 22 26 26 N 1.32453 * 120.95307 * 0.02562 * 20 19 18 27 27 C 1.31624 * 121.80465 * 359.97438 * 26 20 19 28 28 H 1.09008 * 109.47104 * 300.00021 * 1 2 3 29 29 H 1.08996 * 109.47181 * 60.00582 * 1 2 3 30 30 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47250 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46862 * 300.00109 * 3 2 1 33 33 H 1.08999 * 109.47324 * 59.99782 * 3 2 1 34 34 H 1.08996 * 109.46545 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.46893 * 299.99877 * 4 2 1 36 36 H 0.96997 * 120.00547 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47284 * 180.02562 * 13 2 1 38 38 H 1.09003 * 109.47341 * 59.99732 * 13 2 1 39 39 H 1.08001 * 120.82263 * 0.04856 * 18 17 15 40 40 H 1.07999 * 120.36604 * 180.28053 * 19 18 17 41 41 H 1.08007 * 125.90392 * 359.97438 * 22 21 20 42 42 H 1.08006 * 126.24651 * 180.18486 * 23 22 21 43 43 H 1.08001 * 126.24655 * 179.75911 * 24 23 22 44 44 H 1.08002 * 125.90169 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.68787 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2489 0.3992 -5.2571 10 1 2.2272 1.4409 -5.6609 11 1 1.0843 -0.5798 -6.3616 12 1 -0.0592 1.0366 -4.9616 13 6 2.0401 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9185 -0.5483 3.6274 16 8 2.6194 -1.5396 3.6754 17 6 1.4643 0.0950 4.8748 18 6 1.8350 -0.4292 6.1223 19 6 1.3848 0.2075 7.2606 20 6 0.5848 1.3397 7.1357 21 7 0.1274 1.9875 8.2820 22 6 0.3879 1.6090 9.5697 23 6 -0.2214 2.4820 10.3961 24 6 -0.8908 3.4290 9.5938 25 6 -0.6614 3.1039 8.3062 26 7 0.2519 1.8104 5.9432 27 6 0.6590 1.2347 4.8318 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2491 36 1 2.8621 -1.8820 -4.7336 37 1 3.1300 -0.7208 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 2.4577 -1.3091 6.1899 40 1 1.6542 -0.1656 8.2377 41 1 0.9814 0.7589 9.8723 42 1 -0.2038 2.4580 11.4758 43 1 -1.4794 4.2629 9.9468 44 1 -1.0362 3.6334 7.4428 45 1 0.3674 1.6478 3.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798879479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:07 Heat of formation + Delta-G solvation = -4.206942 kcal Electronic energy + Delta-G solvation = -26553.095867 eV Core-core repulsion = 22729.653147 eV Total energy + Delta-G solvation = -3823.442720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16862 -40.72329 -39.62384 -37.26882 -35.49748 -33.88097 -33.15712 -32.37091 -30.26719 -29.31019 -27.36850 -26.55584 -26.45759 -24.94087 -24.26194 -23.04725 -21.59698 -20.62097 -20.56774 -19.12027 -18.44814 -17.91668 -17.05279 -16.36545 -16.31478 -15.97298 -15.75697 -15.58817 -14.61968 -14.50103 -14.10045 -14.02461 -13.78113 -13.63317 -13.49714 -13.24632 -13.10827 -12.73736 -12.48354 -12.44362 -12.40554 -12.08832 -11.32783 -11.00270 -10.89605 -10.82642 -10.64704 -10.60702 -10.39480 -10.38924 -10.34186 -10.24788 -10.12714 -9.79473 -9.26982 -8.98730 -8.72017 -8.67683 -8.39682 -6.03807 -4.05122 -0.12076 0.64516 1.73429 2.10533 2.51528 2.60210 2.66182 3.29634 3.36628 3.37103 3.38971 3.77283 4.08656 4.33504 4.33961 4.42061 4.60772 4.73085 4.87282 5.01357 5.06249 5.20404 5.31749 5.34778 5.41732 5.44810 5.54209 5.75283 5.79282 5.80984 5.89986 5.97431 6.13161 6.31304 6.42830 6.45590 6.51635 6.57152 6.66467 6.70786 6.88406 7.06330 7.06957 7.09045 7.30266 7.56765 7.68205 7.74828 7.94461 8.35877 8.99152 9.58196 11.07741 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.002039 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.974236 B =13729.531734 C =14505.132397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.081 3.919 14 O -0.345 6.345 15 C 0.510 3.490 16 O -0.506 6.506 17 C -0.191 4.191 18 C 0.016 3.984 19 C -0.200 4.200 20 C 0.378 3.622 21 N -0.398 5.398 22 C -0.017 4.017 23 C -0.177 4.177 24 C -0.195 4.195 25 C 0.015 3.985 26 N -0.511 5.511 27 C 0.200 3.800 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.172 0.828 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 6.161 26.750 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.008 3.992 14 O -0.261 6.261 15 C 0.354 3.646 16 O -0.396 6.396 17 C -0.195 4.195 18 C -0.010 4.010 19 C -0.222 4.222 20 C 0.151 3.849 21 N -0.074 5.074 22 C -0.142 4.142 23 C -0.201 4.201 24 C -0.219 4.219 25 C -0.110 4.110 26 N -0.223 5.223 27 C 0.041 3.959 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.186 0.814 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.190 0.810 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.512 6.366 26.321 27.453 hybrid contribution 0.378 -0.514 -0.922 1.121 sum -4.134 5.852 25.399 26.390 Atomic orbital electron populations 1.21729 0.94742 1.01012 1.00903 1.20837 0.96208 0.96251 0.92591 1.21727 1.00095 0.95666 1.00902 1.19130 0.96408 0.95314 0.89375 1.21141 1.31300 1.12136 0.90261 0.92043 1.25017 0.95298 0.95078 0.99153 1.69956 1.36932 1.23009 1.23531 0.86608 0.79240 0.79383 0.82864 1.20732 1.21329 1.19855 1.23601 0.99109 0.96024 0.80488 1.86518 1.69299 1.55705 1.14546 1.20630 0.77681 0.81941 0.84374 1.90851 1.35462 1.25091 1.88183 1.20239 1.06219 1.00619 0.92440 1.21602 0.92681 0.97199 0.89469 1.21475 1.02723 0.97161 1.00887 1.18537 0.91015 0.89366 0.86019 1.41515 1.39480 1.22759 1.03655 1.21949 1.07559 1.03698 0.80976 1.21093 1.02578 0.97111 0.99366 1.21125 1.05995 1.02652 0.92143 1.22179 0.98724 0.90521 0.99607 1.67131 1.25188 1.32957 0.96982 1.23128 0.87932 0.88793 0.96064 0.94212 0.91460 0.93710 0.93705 0.91475 0.94200 0.96310 0.96297 0.92994 0.91331 0.91327 0.82338 0.83217 0.81350 0.83718 0.83803 0.81023 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 2 C -0.06 -1.13 0.61 -154.51 -0.09 -1.23 16 3 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.08 1.41 4.33 37.16 0.16 1.57 16 14 O -0.34 -5.23 8.15 -40.61 -0.33 -5.56 16 15 C 0.51 7.29 7.90 34.51 0.27 7.57 16 16 O -0.51 -8.47 16.20 -19.27 -0.31 -8.78 16 17 C -0.19 -2.15 5.89 -104.83 -0.62 -2.77 16 18 C 0.02 0.15 9.70 -38.90 -0.38 -0.23 16 19 C -0.20 -1.62 9.46 -39.32 -0.37 -1.99 16 20 C 0.38 3.79 7.48 -154.58 -1.16 2.64 16 21 N -0.40 -3.78 2.96 -62.65 -0.19 -3.97 16 22 C -0.02 -0.13 10.71 -16.60 -0.18 -0.31 16 23 C -0.18 -1.32 10.86 -39.76 -0.43 -1.75 16 24 C -0.20 -1.58 10.86 -39.76 -0.43 -2.01 16 25 C 0.01 0.14 10.99 -16.60 -0.18 -0.04 16 26 N -0.51 -5.62 9.79 -11.99 -0.12 -5.73 16 27 C 0.20 2.12 10.78 -17.13 -0.18 1.93 16 28 H 0.04 0.62 7.68 -51.92 -0.40 0.22 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 33 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.16 1.27 7.73 -52.49 -0.41 0.86 16 40 H 0.15 0.76 6.66 -52.49 -0.35 0.41 16 41 H 0.17 0.76 6.96 -52.48 -0.37 0.40 16 42 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.17 1.46 8.03 -52.49 -0.42 1.03 16 45 H 0.19 1.74 7.61 -52.49 -0.40 1.34 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -31.33 378.65 -9.23 -40.56 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.24 Total: -0.71 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.47 Total: -12.16 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.43 Total: -35.12 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.64 Total: -14.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.33 -9.23 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798879479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.357 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds