Wall clock time and date at job start Tue Mar 31 2020 15:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46946 * 239.99794 * 2 1 3 5 5 C 1.50701 * 109.47015 * 59.99776 * 4 2 1 6 6 H 1.07995 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99563 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00656 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99519 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47324 * 90.00337 * 9 7 5 11 11 H 1.48501 * 109.46733 * 209.99753 * 9 7 5 12 12 H 1.48493 * 109.47446 * 330.00014 * 9 7 5 13 13 C 1.52996 * 109.47135 * 119.99807 * 2 1 3 14 14 O 1.45206 * 109.47092 * 300.00244 * 13 2 1 15 15 C 1.34743 * 116.99949 * 180.02562 * 14 13 2 16 16 O 1.21504 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.47515 * 119.99814 * 179.97438 * 15 14 13 18 18 C 1.40310 * 120.49733 * 179.97438 * 17 15 14 19 19 C 1.37980 * 118.35133 * 180.02562 * 18 17 15 20 20 C 1.39195 * 119.26259 * 359.97438 * 19 18 17 21 21 N 1.39387 * 119.52218 * 180.02562 * 20 19 18 22 22 C 1.36718 * 125.69356 * 359.69237 * 21 20 19 23 23 C 1.34766 * 108.18919 * 179.83087 * 22 21 20 24 24 C 1.41022 * 107.50148 * 0.42930 * 23 22 21 25 25 C 1.34766 * 107.49903 * 359.73003 * 24 23 22 26 26 N 1.32453 * 120.95307 * 0.02562 * 20 19 18 27 27 C 1.31624 * 121.80465 * 359.97438 * 26 20 19 28 28 H 1.09008 * 109.47104 * 300.00021 * 1 2 3 29 29 H 1.08996 * 109.47181 * 60.00582 * 1 2 3 30 30 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47250 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46862 * 300.00109 * 3 2 1 33 33 H 1.08999 * 109.47324 * 59.99782 * 3 2 1 34 34 H 1.08996 * 109.46545 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.46893 * 299.99877 * 4 2 1 36 36 H 0.96997 * 120.00547 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47284 * 180.02562 * 13 2 1 38 38 H 1.09003 * 109.47341 * 59.99732 * 13 2 1 39 39 H 1.08001 * 120.82263 * 0.04856 * 18 17 15 40 40 H 1.07999 * 120.36604 * 180.28053 * 19 18 17 41 41 H 1.08007 * 125.90392 * 359.97438 * 22 21 20 42 42 H 1.08006 * 126.24651 * 180.18486 * 23 22 21 43 43 H 1.08001 * 126.24655 * 179.75911 * 24 23 22 44 44 H 1.08002 * 125.90169 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.68787 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8673 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2489 0.3992 -5.2571 10 1 2.2272 1.4409 -5.6609 11 1 1.0843 -0.5798 -6.3616 12 1 -0.0592 1.0366 -4.9616 13 6 2.0401 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9185 -0.5483 3.6274 16 8 2.6194 -1.5396 3.6754 17 6 1.4643 0.0950 4.8748 18 6 1.8350 -0.4292 6.1223 19 6 1.3848 0.2075 7.2606 20 6 0.5848 1.3397 7.1357 21 7 0.1274 1.9875 8.2820 22 6 0.3879 1.6090 9.5697 23 6 -0.2214 2.4820 10.3961 24 6 -0.8908 3.4290 9.5938 25 6 -0.6614 3.1039 8.3062 26 7 0.2519 1.8104 5.9432 27 6 0.6590 1.2347 4.8318 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2491 36 1 2.8621 -1.8820 -4.7336 37 1 3.1300 -0.7208 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 2.4577 -1.3091 6.1899 40 1 1.6542 -0.1656 8.2377 41 1 0.9814 0.7589 9.8723 42 1 -0.2038 2.4580 11.4758 43 1 -1.4794 4.2629 9.9468 44 1 -1.0362 3.6334 7.4428 45 1 0.3674 1.6478 3.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798879479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:04 Heat of formation + Delta-G solvation = -18.062398 kcal Electronic energy + Delta-G solvation = -26553.696685 eV Core-core repulsion = 22729.653147 eV Total energy + Delta-G solvation = -3824.043537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -42.81811 -41.73467 -40.55015 -38.71819 -36.93284 -34.63824 -34.37183 -33.88569 -31.04617 -29.89563 -29.25570 -27.95960 -27.94334 -25.93858 -25.07165 -24.73643 -22.62245 -21.32874 -21.21589 -19.99885 -19.73588 -19.02608 -18.36475 -17.99911 -17.53359 -17.07089 -16.50044 -16.48750 -16.23874 -15.51591 -15.33629 -14.93852 -14.78070 -14.60364 -14.45818 -14.38334 -14.14347 -13.94289 -13.93182 -13.74828 -13.27118 -13.00615 -12.97546 -12.74616 -12.66297 -12.30761 -12.27910 -12.01811 -11.86777 -11.86033 -11.39961 -11.33388 -11.06189 -11.03241 -10.91412 -10.88969 -10.52098 -9.39411 -9.26669 -8.15364 -6.22737 -0.91637 -0.05445 0.96366 1.40904 1.43183 1.43831 1.53174 1.56009 1.60396 2.02951 2.44200 2.58909 3.06486 3.19365 3.38637 3.51899 3.61061 3.74840 3.92507 3.94827 4.13012 4.23418 4.26496 4.39075 4.47581 4.49778 4.60645 4.65349 4.69856 4.74023 4.84257 5.03172 5.10066 5.14044 5.15072 5.24050 5.30195 5.35381 5.43808 5.47928 5.52036 5.54352 5.75822 5.82397 5.88175 6.00803 6.24323 6.28545 6.54180 6.63396 6.91201 7.44777 8.97063 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.002039 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.974236 B =13729.531734 C =14505.132397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.091 3.909 14 O -0.339 6.339 15 C 0.514 3.486 16 O -0.535 6.535 17 C -0.206 4.206 18 C 0.021 3.979 19 C -0.188 4.188 20 C 0.371 3.629 21 N -0.408 5.408 22 C -0.021 4.021 23 C -0.187 4.187 24 C -0.196 4.196 25 C -0.015 4.015 26 N -0.529 5.529 27 C 0.202 3.798 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.069 0.931 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.171 0.829 40 H 0.185 0.815 41 H 0.200 0.800 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 7.389 29.084 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.017 3.983 14 O -0.255 6.255 15 C 0.359 3.641 16 O -0.426 6.426 17 C -0.210 4.210 18 C -0.005 4.005 19 C -0.209 4.209 20 C 0.143 3.857 21 N -0.084 5.084 22 C -0.144 4.144 23 C -0.210 4.210 24 C -0.220 4.220 25 C -0.140 4.140 26 N -0.241 5.241 27 C 0.043 3.957 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.217 0.783 42 H 0.185 0.815 43 H 0.176 0.824 44 H 0.187 0.813 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.403 7.624 28.688 30.172 hybrid contribution 0.630 -0.868 -1.459 1.811 sum -4.773 6.756 27.229 28.458 Atomic orbital electron populations 1.21666 0.93472 1.00951 1.01721 1.20635 0.97137 0.96564 0.91151 1.21666 0.99755 0.94662 1.01745 1.18990 0.94566 0.94373 0.91838 1.21542 1.30576 1.12123 0.90947 0.91018 1.25927 0.95668 0.95872 1.02654 1.70102 1.38662 1.24836 1.24160 0.85531 0.79163 0.78125 0.78749 1.20148 1.21474 1.18469 1.23196 0.98518 0.95493 0.81072 1.86491 1.69258 1.55322 1.14381 1.21114 0.76858 0.81502 0.84581 1.90840 1.36938 1.26470 1.88382 1.20093 1.07876 1.01473 0.91553 1.21794 0.92319 0.97385 0.88953 1.21761 1.01263 0.95927 1.01977 1.18881 0.90997 0.89843 0.85985 1.41697 1.39745 1.22911 1.04072 1.22574 1.07299 1.04411 0.80111 1.21472 1.02231 0.96758 1.00560 1.21456 1.05562 1.03024 0.91935 1.22346 1.00033 0.91374 1.00213 1.67139 1.25920 1.33553 0.97508 1.23200 0.87588 0.88477 0.96439 0.91245 0.92647 0.94266 0.94268 0.92615 0.91236 0.99100 0.99082 0.93107 0.92086 0.92083 0.81135 0.79770 0.78308 0.81525 0.82369 0.81340 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.08 71.98 0.58 -3.69 16 2 C -0.05 -2.12 0.61 -52.18 -0.03 -2.15 16 3 C -0.12 -4.28 8.08 71.98 0.58 -3.69 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.48 7.65 25.60 0.20 -27.29 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 9 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.09 3.20 4.33 71.98 0.31 3.51 16 14 O -0.34 -9.99 8.15 -56.53 -0.46 -10.45 16 15 C 0.51 14.34 7.90 70.27 0.56 14.90 16 16 O -0.54 -17.80 16.20 19.82 0.32 -17.48 16 17 C -0.21 -4.36 5.89 -20.00 -0.12 -4.47 16 18 C 0.02 0.34 9.70 22.71 0.22 0.56 16 19 C -0.19 -2.49 9.46 22.44 0.21 -2.27 16 20 C 0.37 6.69 7.48 132.93 0.99 7.69 16 21 N -0.41 -6.92 2.96 -352.11 -1.04 -7.97 16 22 C -0.02 -0.25 10.71 83.13 0.89 0.64 16 23 C -0.19 -2.27 10.86 22.16 0.24 -2.03 16 24 C -0.20 -2.84 10.86 22.16 0.24 -2.60 16 25 C -0.02 -0.27 10.99 83.13 0.91 0.65 16 26 N -0.53 -10.96 9.79 -191.85 -1.88 -12.84 16 27 C 0.20 4.02 10.78 85.05 0.92 4.94 16 28 H 0.07 2.03 7.68 -2.38 -0.02 2.01 16 29 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 33 H 0.07 2.03 7.68 -2.39 -0.02 2.01 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.17 2.34 7.73 -2.91 -0.02 2.32 16 40 H 0.19 1.06 6.66 -2.91 -0.02 1.04 16 41 H 0.20 0.94 6.96 -2.91 -0.02 0.92 16 42 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.17 2.86 8.03 -2.91 -0.02 2.83 16 45 H 0.19 3.34 7.61 -2.91 -0.02 3.32 16 Total: -1.00 -68.87 378.65 7.53 -61.34 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.99 Total: 10.88 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 7.29 Total: -12.98 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.64 Total: -76.82 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.14 Total: -27.93 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.87 7.53 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798879479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.280 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds