Wall clock time and date at job start Tue Mar 31 2020 14:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39592 * 120.10370 * 204.11366 * 3 2 1 5 5 C 1.37993 * 119.99390 * 179.97438 * 4 3 2 6 6 C 1.38242 * 120.22184 * 359.75237 * 5 4 3 7 7 C 1.38954 * 120.20984 * 0.50414 * 6 5 4 8 8 N 1.39944 * 119.99656 * 179.77158 * 7 6 5 9 9 C 1.34777 * 119.99715 * 214.82760 * 8 7 6 10 10 O 1.21280 * 120.00228 * 355.38063 * 9 8 7 11 11 C 1.50706 * 120.00055 * 175.38693 * 9 8 7 12 12 N 1.46493 * 109.47039 * 179.97438 * 11 9 8 13 13 C 1.34783 * 119.99940 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00022 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47326 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46924 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46716 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99900 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00241 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46927 * 89.99644 * 23 21 19 25 25 H 1.48502 * 109.47057 * 209.99869 * 23 21 19 26 26 H 1.48496 * 109.47117 * 329.99958 * 23 21 19 27 27 C 1.38637 * 120.00060 * 359.49415 * 7 6 5 28 28 H 4.52051 * 14.03068 * 359.97438 * 4 2 1 29 29 H 1.07995 * 120.00342 * 359.96075 * 4 3 2 30 30 H 1.08004 * 119.88930 * 179.97438 * 5 4 3 31 31 H 1.07991 * 119.89535 * 180.25195 * 6 5 4 32 32 H 0.96997 * 120.00421 * 34.82616 * 8 7 6 33 33 H 1.08997 * 109.47069 * 59.99168 * 11 9 8 34 34 H 1.09003 * 109.46431 * 299.99787 * 11 9 8 35 35 H 0.96998 * 120.00726 * 359.97438 * 12 11 9 36 36 H 1.09003 * 109.47418 * 299.99404 * 15 13 12 37 37 H 1.08997 * 109.47704 * 59.99779 * 15 13 12 38 38 H 1.09008 * 109.46838 * 299.99392 * 16 15 13 39 39 H 1.08993 * 109.47452 * 59.99689 * 16 15 13 40 40 H 1.08995 * 109.46966 * 299.99738 * 17 16 15 41 41 H 1.09003 * 109.46864 * 59.99519 * 17 16 15 42 42 H 1.08995 * 109.47526 * 299.99935 * 18 17 16 43 43 H 1.08993 * 109.47213 * 60.00160 * 18 17 16 44 44 H 0.97001 * 120.00843 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.10695 * 180.22940 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3057 1.1032 0.4934 5 6 4.6857 1.1012 0.4928 6 6 5.3797 0.0077 0.0094 7 6 4.6922 -1.0924 -0.4887 8 7 5.3993 -2.1950 -0.9813 9 6 4.9159 -2.8925 -2.0283 10 8 3.8288 -2.6173 -2.4903 11 6 5.7261 -4.0144 -2.6250 12 7 4.9875 -4.6100 -3.7411 13 6 5.5216 -5.6376 -4.4307 14 8 6.6139 -6.0688 -4.1274 15 6 4.7617 -6.2507 -5.5785 16 6 5.5842 -7.3897 -6.1843 17 6 4.8124 -8.0126 -7.3493 18 6 5.6353 -9.1511 -7.9555 19 6 4.8753 -9.7642 -9.1034 20 1 3.9025 -9.3805 -9.3732 21 6 5.4215 -10.8157 -9.8084 22 7 6.6058 -11.2833 -9.4795 23 14 4.4791 -11.5762 -11.2308 24 1 4.8317 -10.8730 -12.4904 25 1 4.8361 -13.0128 -11.3493 26 1 3.0206 -11.4473 -10.9835 27 6 3.3059 -1.1000 -0.4923 28 1 -1.0500 -0.0007 -0.0009 29 1 2.7671 1.9578 0.8753 30 1 5.2253 1.9553 0.8745 31 1 6.4596 0.0101 0.0152 32 1 6.2374 -2.4572 -0.5693 33 1 5.9100 -4.7738 -1.8650 34 1 6.6775 -3.6234 -2.9857 35 1 4.1141 -4.2650 -3.9840 36 1 3.8108 -6.6423 -5.2169 37 1 4.5765 -5.4916 -6.3385 38 1 6.5353 -6.9985 -6.5460 39 1 5.7690 -8.1487 -5.4243 40 1 3.8616 -8.4038 -6.9874 41 1 4.6273 -7.2537 -8.1096 42 1 6.5859 -8.7596 -8.3176 43 1 5.8208 -9.9100 -7.1955 44 1 6.9903 -12.0228 -9.9757 45 1 2.7698 -1.9556 -0.8757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806532204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:34 Heat of formation + Delta-G solvation = -11.032493 kcal Electronic energy + Delta-G solvation = -25019.489787 eV Core-core repulsion = 21195.751089 eV Total energy + Delta-G solvation = -3823.738698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24679 -39.78933 -38.95814 -35.75397 -35.03392 -34.53808 -33.90928 -32.61486 -31.00655 -30.56096 -29.81497 -27.89592 -25.40466 -24.07800 -23.37449 -22.22942 -21.06095 -20.40234 -19.96171 -19.77428 -17.98348 -17.35337 -16.89903 -16.50578 -16.39570 -16.21195 -15.90807 -15.66031 -15.15192 -14.94420 -14.45554 -14.32122 -14.12868 -13.94902 -13.69873 -13.42668 -13.03243 -12.59068 -12.46298 -12.22808 -12.09419 -11.78768 -11.67595 -11.58684 -11.02595 -10.96497 -10.80061 -10.52442 -10.49434 -10.42731 -10.38833 -9.93329 -9.59386 -9.36630 -9.21121 -9.13499 -8.96561 -8.71184 -8.28515 -5.93371 -3.95767 0.39379 0.78583 1.88144 2.15329 2.36750 2.57729 2.64803 3.12841 3.35658 3.41609 3.45057 3.51631 3.76832 4.01331 4.40655 4.50782 4.54624 4.66091 4.78273 4.84467 4.93408 4.98335 5.03417 5.15054 5.34702 5.39252 5.42273 5.59603 5.67487 5.76203 5.86483 5.90986 5.98543 6.09447 6.16026 6.32178 6.42247 6.56569 6.68550 6.86148 7.03795 7.10550 7.22152 7.34122 7.41594 7.76272 7.92303 8.08064 8.16209 8.50136 9.11948 9.67869 11.17911 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.001480 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.503337 B =18918.152867 C =19850.789723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.152 4.152 3 C 0.027 3.973 4 C -0.110 4.110 5 C -0.099 4.099 6 C -0.134 4.134 7 C 0.145 3.855 8 N -0.670 5.670 9 C 0.511 3.489 10 O -0.513 6.513 11 C 0.103 3.897 12 N -0.729 5.729 13 C 0.517 3.483 14 O -0.535 6.535 15 C -0.137 4.137 16 C -0.103 4.103 17 C -0.111 4.111 18 C 0.019 3.981 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.097 4.097 28 H 0.226 0.774 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.417 0.583 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.412 0.588 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 27.728 25.186 37.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C 0.026 3.974 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.154 4.154 7 C 0.051 3.949 8 N -0.316 5.316 9 C 0.299 3.701 10 O -0.387 6.387 11 C -0.025 4.025 12 N -0.387 5.387 13 C 0.305 3.695 14 O -0.411 6.411 15 C -0.177 4.177 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.018 4.018 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.117 4.117 28 H 0.242 0.758 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.249 0.751 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.964 27.408 24.966 37.405 hybrid contribution -0.571 -0.343 -0.654 0.933 sum -5.535 27.065 24.312 36.800 Atomic orbital electron populations 1.24938 0.95808 0.98913 0.98885 1.19945 0.91970 1.01653 1.01671 1.15797 0.86782 0.94753 1.00036 1.21222 0.94223 0.97656 0.99792 1.20878 0.93684 0.97968 0.99269 1.21048 1.00273 0.92200 1.01866 1.17549 0.90970 0.87868 0.98524 1.43376 1.26405 1.29211 1.32638 1.20879 0.86881 0.83112 0.79243 1.90732 1.20674 1.66785 1.60551 1.20977 0.95590 0.94274 0.91653 1.45869 1.23421 1.36148 1.33235 1.21157 0.86492 0.78454 0.83405 1.90713 1.20974 1.61334 1.68074 1.21793 1.00338 1.00225 0.95351 1.21463 0.98551 0.95529 0.98566 1.21658 0.98827 0.99097 0.95289 1.19099 0.95101 0.92260 0.95296 1.21294 1.03673 1.15945 1.14964 0.92740 1.25034 0.95010 0.96960 0.97531 1.69971 1.16276 1.26460 1.40775 0.86613 0.80230 0.78428 0.82824 1.20722 1.21267 1.19930 1.21340 0.92472 0.99110 0.98761 0.75777 0.85389 0.84870 0.85085 0.74639 0.87974 0.87918 0.75057 0.88887 0.88880 0.91755 0.91758 0.93420 0.93424 0.96578 0.96569 0.93072 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 19.25 29.55 0.57 -0.66 16 2 C -0.15 -1.41 13.24 -38.83 -0.51 -1.93 16 3 C 0.03 0.24 5.72 -107.03 -0.61 -0.37 16 4 C -0.11 -0.75 9.75 -39.17 -0.38 -1.13 16 5 C -0.10 -0.52 10.02 -39.67 -0.40 -0.92 16 6 C -0.13 -0.73 9.96 -39.31 -0.39 -1.12 16 7 C 0.14 1.07 6.29 -83.74 -0.53 0.54 16 8 N -0.67 -3.83 5.34 -9.89 -0.05 -3.88 16 9 C 0.51 4.11 7.74 -10.98 -0.09 4.03 16 10 O -0.51 -5.78 13.10 5.56 0.07 -5.71 16 11 C 0.10 0.81 6.16 -5.19 -0.03 0.77 16 12 N -0.73 -7.52 5.53 -61.47 -0.34 -7.86 16 13 C 0.52 6.99 7.83 -10.99 -0.09 6.91 16 14 O -0.54 -9.15 15.98 5.55 0.09 -9.07 16 15 C -0.14 -1.83 5.70 -27.89 -0.16 -1.99 16 16 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 17 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 18 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 19 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 23 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.10 -0.91 8.40 -39.00 -0.33 -1.24 16 28 H 0.23 0.76 7.80 -54.09 -0.42 0.34 16 29 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.13 0.36 8.06 -52.48 -0.42 -0.07 16 31 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 32 H 0.42 0.96 8.82 -40.82 -0.36 0.60 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.92 7.44 -40.82 -0.30 3.62 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.14 1.57 6.22 -52.48 -0.33 1.24 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -37.10 395.18 -8.76 -45.86 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.45 Total: -0.43 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.75 Total: -15.02 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.34 Total: -38.60 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.16 Total: -14.78 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.10 -8.76 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806532204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.824 kcal (2) G-P(sol) polarization free energy of solvation -37.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds