Wall clock time and date at job start Tue Mar 31 2020 14:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39592 * 120.10370 * 204.11366 * 3 2 1 5 5 C 1.37993 * 119.99390 * 179.97438 * 4 3 2 6 6 C 1.38242 * 120.22184 * 359.75237 * 5 4 3 7 7 C 1.38954 * 120.20984 * 0.50414 * 6 5 4 8 8 N 1.39944 * 119.99656 * 179.77158 * 7 6 5 9 9 C 1.34777 * 119.99715 * 214.82760 * 8 7 6 10 10 O 1.21280 * 120.00228 * 355.38063 * 9 8 7 11 11 C 1.50706 * 120.00055 * 175.38693 * 9 8 7 12 12 N 1.46493 * 109.47039 * 179.97438 * 11 9 8 13 13 C 1.34783 * 119.99940 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00022 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47326 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46924 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46716 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99900 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00241 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46927 * 89.99644 * 23 21 19 25 25 H 1.48502 * 109.47057 * 209.99869 * 23 21 19 26 26 H 1.48496 * 109.47117 * 329.99958 * 23 21 19 27 27 C 1.38637 * 120.00060 * 359.49415 * 7 6 5 28 28 H 4.52051 * 14.03068 * 359.97438 * 4 2 1 29 29 H 1.07995 * 120.00342 * 359.96075 * 4 3 2 30 30 H 1.08004 * 119.88930 * 179.97438 * 5 4 3 31 31 H 1.07991 * 119.89535 * 180.25195 * 6 5 4 32 32 H 0.96997 * 120.00421 * 34.82616 * 8 7 6 33 33 H 1.08997 * 109.47069 * 59.99168 * 11 9 8 34 34 H 1.09003 * 109.46431 * 299.99787 * 11 9 8 35 35 H 0.96998 * 120.00726 * 359.97438 * 12 11 9 36 36 H 1.09003 * 109.47418 * 299.99404 * 15 13 12 37 37 H 1.08997 * 109.47704 * 59.99779 * 15 13 12 38 38 H 1.09008 * 109.46838 * 299.99392 * 16 15 13 39 39 H 1.08993 * 109.47452 * 59.99689 * 16 15 13 40 40 H 1.08995 * 109.46966 * 299.99738 * 17 16 15 41 41 H 1.09003 * 109.46864 * 59.99519 * 17 16 15 42 42 H 1.08995 * 109.47526 * 299.99935 * 18 17 16 43 43 H 1.08993 * 109.47213 * 60.00160 * 18 17 16 44 44 H 0.97001 * 120.00843 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.10695 * 180.22940 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3057 1.1032 0.4934 5 6 4.6857 1.1012 0.4928 6 6 5.3797 0.0077 0.0094 7 6 4.6922 -1.0924 -0.4887 8 7 5.3993 -2.1950 -0.9813 9 6 4.9159 -2.8925 -2.0283 10 8 3.8288 -2.6173 -2.4903 11 6 5.7261 -4.0144 -2.6250 12 7 4.9875 -4.6100 -3.7411 13 6 5.5216 -5.6376 -4.4307 14 8 6.6139 -6.0688 -4.1274 15 6 4.7617 -6.2507 -5.5785 16 6 5.5842 -7.3897 -6.1843 17 6 4.8124 -8.0126 -7.3493 18 6 5.6353 -9.1511 -7.9555 19 6 4.8753 -9.7642 -9.1034 20 1 3.9025 -9.3805 -9.3732 21 6 5.4215 -10.8157 -9.8084 22 7 6.6058 -11.2833 -9.4795 23 14 4.4791 -11.5762 -11.2308 24 1 4.8317 -10.8730 -12.4904 25 1 4.8361 -13.0128 -11.3493 26 1 3.0206 -11.4473 -10.9835 27 6 3.3059 -1.1000 -0.4923 28 1 -1.0500 -0.0007 -0.0009 29 1 2.7671 1.9578 0.8753 30 1 5.2253 1.9553 0.8745 31 1 6.4596 0.0101 0.0152 32 1 6.2374 -2.4572 -0.5693 33 1 5.9100 -4.7738 -1.8650 34 1 6.6775 -3.6234 -2.9857 35 1 4.1141 -4.2650 -3.9840 36 1 3.8108 -6.6423 -5.2169 37 1 4.5765 -5.4916 -6.3385 38 1 6.5353 -6.9985 -6.5460 39 1 5.7690 -8.1487 -5.4243 40 1 3.8616 -8.4038 -6.9874 41 1 4.6273 -7.2537 -8.1096 42 1 6.5859 -8.7596 -8.3176 43 1 5.8208 -9.9100 -7.1955 44 1 6.9903 -12.0228 -9.9757 45 1 2.7698 -1.9556 -0.8757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806532204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:33 Heat of formation + Delta-G solvation = -35.512238 kcal Electronic energy + Delta-G solvation = -25020.551308 eV Core-core repulsion = 21195.751089 eV Total energy + Delta-G solvation = -3824.800219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87275 -40.72612 -39.62773 -36.69224 -36.32830 -35.54175 -34.60217 -34.44224 -31.87393 -31.37783 -30.90787 -28.89572 -27.07782 -24.61676 -24.33827 -23.54893 -21.80047 -21.68127 -21.31506 -20.31495 -18.76428 -18.41582 -17.93950 -17.47411 -17.29788 -17.16648 -16.81693 -16.62084 -16.47520 -15.88746 -15.55077 -15.39686 -15.03660 -14.56517 -14.52583 -14.34079 -14.29894 -14.01104 -13.57567 -13.45332 -13.26340 -12.95953 -12.81140 -12.70692 -12.34390 -12.33556 -12.14422 -12.12104 -11.62847 -11.36352 -11.35867 -11.34029 -11.17776 -11.08099 -10.84290 -10.53867 -10.26615 -9.67800 -9.22232 -8.17856 -6.29827 -0.11717 0.24653 1.28247 1.40794 1.42901 1.53846 1.54638 1.59620 1.75876 2.03019 2.32793 2.42867 2.96840 3.14798 3.26535 3.46267 3.83536 3.96160 4.06993 4.13660 4.15482 4.19060 4.25915 4.30688 4.46396 4.50934 4.66821 4.67619 4.69153 4.86077 4.89686 5.12641 5.18293 5.21162 5.25344 5.25785 5.34031 5.40672 5.42100 5.47785 5.58372 5.79888 5.89403 5.92840 6.20498 6.26772 6.42320 6.53302 6.88015 6.88409 7.16365 7.39666 8.94195 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.001480 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.503337 B =18918.152867 C =19850.789723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.201 4.201 3 C 0.003 3.997 4 C -0.116 4.116 5 C -0.094 4.094 6 C -0.126 4.126 7 C 0.132 3.868 8 N -0.654 5.654 9 C 0.516 3.484 10 O -0.549 6.549 11 C 0.102 3.898 12 N -0.718 5.718 13 C 0.520 3.480 14 O -0.577 6.577 15 C -0.130 4.130 16 C -0.095 4.095 17 C -0.098 4.098 18 C 0.018 3.982 19 C -0.544 4.544 20 H 0.064 0.936 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.121 4.121 28 H 0.258 0.742 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.434 0.566 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.417 0.583 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.263 0.737 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 29.538 25.602 39.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.201 4.201 3 C 0.002 3.998 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.146 4.146 7 C 0.038 3.962 8 N -0.301 5.301 9 C 0.304 3.696 10 O -0.426 6.426 11 C -0.025 4.025 12 N -0.374 5.374 13 C 0.308 3.692 14 O -0.457 6.457 15 C -0.170 4.170 16 C -0.133 4.133 17 C -0.135 4.135 18 C -0.019 4.019 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.202 4.202 22 N -0.577 5.577 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.141 4.141 28 H 0.274 0.726 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.180 0.820 32 H 0.274 0.726 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.071 0.929 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.829 29.261 25.425 39.200 hybrid contribution -0.297 -0.845 -0.705 1.140 sum -6.125 28.416 24.721 38.159 Atomic orbital electron populations 1.25817 0.96657 0.97317 0.97371 1.20570 0.93016 1.03265 1.03228 1.16060 0.87106 0.95558 1.01040 1.21486 0.95197 0.97342 0.99429 1.21300 0.93135 0.98789 0.98010 1.21410 1.01807 0.91143 1.00239 1.17707 0.90477 0.88928 0.99042 1.43209 1.26699 1.28439 1.31742 1.20869 0.86285 0.83027 0.79460 1.90731 1.22183 1.67842 1.61849 1.21134 0.95601 0.94505 0.91211 1.45725 1.23536 1.34973 1.33125 1.21049 0.85838 0.78800 0.83476 1.90704 1.22723 1.62866 1.69365 1.21673 1.00162 0.99175 0.95969 1.21246 0.98242 0.96634 0.97160 1.21465 0.98415 0.97314 0.96345 1.19058 0.94779 0.93547 0.94481 1.21767 1.04276 1.16435 1.15690 0.91747 1.26058 0.95970 0.97515 1.00676 1.70122 1.18130 1.27085 1.42315 0.85400 0.79153 0.77328 0.78860 1.19730 1.20851 1.18500 1.21252 0.93606 0.98886 1.00403 0.72556 0.84105 0.81658 0.81952 0.72570 0.86671 0.86574 0.74395 0.86589 0.86569 0.93446 0.93463 0.92241 0.92222 0.99509 0.99508 0.92857 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 19.25 74.32 1.43 -0.80 16 2 C -0.20 -3.89 13.24 30.02 0.40 -3.49 16 3 C 0.00 0.06 5.72 -21.42 -0.12 -0.07 16 4 C -0.12 -1.48 9.75 22.54 0.22 -1.26 16 5 C -0.09 -0.77 10.02 22.21 0.22 -0.54 16 6 C -0.13 -1.07 9.96 22.44 0.22 -0.85 16 7 C 0.13 1.85 6.29 38.11 0.24 2.09 16 8 N -0.65 -6.68 5.34 -303.60 -1.62 -8.30 16 9 C 0.52 7.94 7.74 87.66 0.68 8.62 16 10 O -0.55 -12.53 13.10 -3.03 -0.04 -12.57 16 11 C 0.10 1.47 6.16 85.64 0.53 2.00 16 12 N -0.72 -13.92 5.53 -466.79 -2.58 -16.50 16 13 C 0.52 13.58 7.83 87.65 0.69 14.27 16 14 O -0.58 -19.70 15.98 -3.04 -0.05 -19.75 16 15 C -0.13 -3.28 5.70 29.85 0.17 -3.11 16 16 C -0.09 -3.39 4.50 30.60 0.14 -3.26 16 17 C -0.10 -4.04 5.15 30.60 0.16 -3.89 16 18 C 0.02 1.02 4.97 29.85 0.15 1.17 16 19 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 20 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 21 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 22 N -0.94 -58.97 13.29 21.44 0.28 -58.68 16 23 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 27 C -0.12 -2.39 8.40 22.65 0.19 -2.20 16 28 H 0.26 1.35 7.80 -4.42 -0.03 1.31 16 29 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.16 0.31 8.06 -2.92 -0.02 0.29 16 32 H 0.43 1.10 8.82 -92.71 -0.82 0.29 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.42 7.43 7.44 -92.71 -0.69 6.74 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 39 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 42 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 43 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.12 2.87 6.22 -2.91 -0.02 2.85 16 Total: -1.00 -84.03 395.18 3.53 -80.50 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -0.50 Total: 10.91 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 6.00 Total: -22.76 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.92 Total: -83.48 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.09 Total: -32.33 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -84.03 3.53 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806532204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.985 kcal (2) G-P(sol) polarization free energy of solvation -84.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds