Wall clock time and date at job start Tue Mar 31 2020 15:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47166 * 240.00199 * 2 1 3 5 5 C 1.50697 * 109.47404 * 59.99939 * 4 2 1 6 6 H 1.08003 * 120.00041 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00266 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00124 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00073 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46945 * 89.99834 * 9 7 5 11 11 H 1.48497 * 109.46916 * 209.99979 * 9 7 5 12 12 H 1.48493 * 109.47007 * 330.00043 * 9 7 5 13 13 C 1.53002 * 109.47084 * 119.99801 * 2 1 3 14 14 N 1.46498 * 109.47425 * 300.00221 * 13 2 1 15 15 C 1.35856 * 120.00011 * 180.02562 * 14 13 2 16 16 C 1.37737 * 120.00159 * 174.33846 * 15 14 13 17 17 C 1.47771 * 120.99048 * 171.33196 * 16 15 14 18 18 C 1.39013 * 121.76867 * 0.02562 * 17 16 15 19 19 C 1.37985 * 119.57906 * 180.23138 * 18 17 16 20 20 C 1.38735 * 120.53736 * 359.97438 * 19 18 17 21 21 C 1.37823 * 120.72041 * 0.02562 * 20 19 18 22 22 C 1.39526 * 119.65598 * 359.97438 * 21 20 19 23 23 C 1.46870 * 121.39401 * 180.02562 * 22 21 20 24 24 O 1.21643 * 119.44601 * 359.97438 * 23 22 21 25 25 N 1.34297 * 121.10756 * 180.02562 * 23 22 21 26 26 C 1.34297 * 122.87775 * 359.94622 * 25 23 22 27 27 O 1.21742 * 119.66976 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.46896 * 299.99485 * 1 2 3 29 29 H 1.08996 * 109.47249 * 59.99899 * 1 2 3 30 30 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47459 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47280 * 300.00083 * 3 2 1 33 33 H 1.09006 * 109.47330 * 59.99903 * 3 2 1 34 34 H 1.09000 * 109.47440 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47487 * 300.00004 * 4 2 1 36 36 H 0.97000 * 120.00823 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.46561 * 180.02562 * 13 2 1 38 38 H 1.08993 * 109.46823 * 60.00823 * 13 2 1 39 39 H 0.96997 * 119.99813 * 359.97438 * 14 13 2 40 40 H 1.08003 * 120.00227 * 354.33301 * 15 14 13 41 41 H 1.08000 * 120.21065 * 0.21406 * 18 17 16 42 42 H 1.07995 * 119.72939 * 180.02562 * 19 18 17 43 43 H 1.07998 * 119.64218 * 180.02562 * 20 19 18 44 44 H 1.07992 * 120.16908 * 179.97438 * 21 20 19 45 45 H 0.96997 * 118.56207 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 1.4316 0.1376 -4.8057 9 14 2.9443 -2.0009 -3.9034 10 1 2.0858 -3.2117 -3.9482 11 1 3.7358 -1.9085 -5.1565 12 1 3.8651 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0307 2.4455 15 6 1.8803 -0.4945 3.6794 16 6 1.5203 0.2184 4.8015 17 6 1.6953 -0.3516 6.1536 18 6 2.2269 -1.6210 6.3496 19 6 2.3658 -2.1107 7.6321 20 6 1.9803 -1.3466 8.7241 21 6 1.4513 -0.0860 8.5497 22 6 1.3023 0.4280 7.2611 23 6 0.7436 1.7667 7.0313 24 8 0.4023 2.4437 7.9826 25 7 0.6023 2.2556 5.7885 26 6 0.9559 1.5684 4.6902 27 8 0.8024 2.0685 3.5909 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 1.6659 -0.1937 -5.6868 37 1 3.1301 -0.7208 1.2494 38 1 1.6768 -1.7488 1.2492 39 1 0.9943 0.7582 2.3564 40 1 2.4238 -1.4223 3.7804 41 1 2.5289 -2.2203 5.5034 42 1 2.7789 -3.0964 7.7872 43 1 2.0959 -1.7440 9.7216 44 1 1.1537 0.5009 9.4060 45 1 0.2287 3.1440 5.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806551521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:25 Heat of formation + Delta-G solvation = -42.024124 kcal Electronic energy + Delta-G solvation = -27365.447632 eV Core-core repulsion = 23540.365036 eV Total energy + Delta-G solvation = -3825.082596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -41.52271 -39.38977 -38.74670 -38.12526 -35.70203 -34.97748 -32.86018 -32.10774 -31.39398 -29.16858 -27.79400 -26.66141 -26.23475 -24.61578 -24.23756 -23.03424 -22.25531 -21.29616 -19.50386 -18.43909 -18.17024 -17.65028 -17.02288 -16.27120 -16.11170 -15.88555 -15.65474 -14.92934 -14.84088 -14.61167 -14.32840 -14.19000 -14.02749 -13.79272 -13.49895 -13.31945 -13.15269 -12.89694 -12.88118 -12.38573 -12.13244 -11.66179 -11.37685 -11.27108 -11.09664 -11.05676 -10.75951 -10.69047 -10.54430 -10.28569 -10.18069 -10.10133 -9.87932 -9.69428 -9.57331 -9.28059 -9.13256 -8.63605 -7.52097 -6.12887 -4.11354 0.33852 0.92963 1.45320 2.34762 2.76225 2.99528 3.17790 3.21356 3.29972 3.30580 3.86893 3.97025 4.35068 4.43204 4.54070 4.58635 4.75692 4.94549 5.00275 5.08618 5.12521 5.23217 5.25690 5.42616 5.45616 5.57141 5.70820 5.76476 5.85987 5.90524 5.99716 6.14762 6.18349 6.20596 6.23395 6.40458 6.48195 6.61234 6.71630 6.78586 6.90518 6.92287 6.95518 7.03790 7.18688 7.22704 7.54263 7.66861 7.92614 8.43187 8.91419 9.48280 10.99869 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.002582 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.206043 B =10840.224624 C =11871.275602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 C -0.135 4.135 4 C 0.000 4.000 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.094 3.906 14 N -0.655 5.655 15 C 0.297 3.703 16 C -0.368 4.368 17 C 0.075 3.925 18 C -0.158 4.158 19 C -0.066 4.066 20 C -0.164 4.164 21 C -0.031 4.031 22 C -0.181 4.181 23 C 0.573 3.427 24 O -0.520 6.520 25 N -0.665 5.665 26 C 0.578 3.422 27 O -0.539 6.539 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.426 0.574 40 H 0.162 0.838 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -5.519 23.911 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.038 4.038 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.029 4.029 14 N -0.276 5.276 15 C 0.148 3.852 16 C -0.382 4.382 17 C 0.073 3.927 18 C -0.176 4.176 19 C -0.084 4.084 20 C -0.182 4.182 21 C -0.050 4.050 22 C -0.185 4.185 23 C 0.366 3.634 24 O -0.397 6.397 25 N -0.326 5.326 26 C 0.377 3.623 27 O -0.418 6.418 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.277 0.723 40 H 0.179 0.821 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.369 -5.155 23.338 24.018 hybrid contribution 0.275 -0.213 -0.309 0.465 sum 2.644 -5.368 23.029 23.794 Atomic orbital electron populations 1.21815 0.94496 1.01293 1.01421 1.20677 0.96118 0.96200 0.93167 1.21827 1.00316 0.95340 1.01725 1.19597 0.96237 0.95400 0.92590 1.21049 1.32103 1.13520 0.88534 0.90337 1.25015 0.95689 0.96775 0.95968 1.69895 1.45651 1.40474 0.97943 0.86838 0.81196 0.83851 0.77690 1.20376 1.21436 1.19134 1.22307 0.99566 0.96683 0.84312 1.46176 1.46105 1.31230 1.04113 1.22277 0.85039 0.93930 0.83979 1.19131 1.29709 0.97346 0.91980 1.18515 0.91223 0.92504 0.90443 1.20889 1.03874 0.95259 0.97579 1.21296 0.95597 0.99192 0.92323 1.21020 1.03141 0.94865 0.99210 1.21077 0.93594 0.94813 0.95538 1.19464 1.09919 0.94589 0.94496 1.18145 0.76712 0.86743 0.81822 1.90838 1.48381 1.59860 1.40583 1.44482 1.59444 1.21280 1.07430 1.18011 0.75900 0.85495 0.82920 1.90592 1.55616 1.70350 1.25281 0.94754 0.90491 0.93307 0.93426 0.90645 0.94056 0.96316 0.96780 0.92678 0.90525 0.90527 0.72320 0.82130 0.85364 0.85556 0.85564 0.84804 0.74875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.06 -1.02 0.54 -154.51 -0.08 -1.11 16 3 C -0.13 -2.33 8.05 37.16 0.30 -2.04 16 4 C 0.00 -0.01 3.11 -27.89 -0.09 -0.10 16 5 C -0.51 -13.19 8.20 -34.44 -0.28 -13.48 16 6 H 0.08 2.18 5.92 -52.48 -0.31 1.87 16 7 C 0.07 1.82 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 9 Si 0.88 20.30 27.47 -169.99 -4.67 15.63 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 13 C 0.09 1.17 5.14 -4.04 -0.02 1.15 16 14 N -0.66 -7.76 4.77 -60.48 -0.29 -8.04 16 15 C 0.30 2.82 9.99 -15.95 -0.16 2.66 16 16 C -0.37 -4.10 6.04 -102.75 -0.62 -4.72 16 17 C 0.08 0.77 5.90 -104.66 -0.62 0.16 16 18 C -0.16 -1.23 9.48 -39.39 -0.37 -1.60 16 19 C -0.07 -0.45 10.03 -39.49 -0.40 -0.85 16 20 C -0.16 -1.24 10.01 -39.55 -0.40 -1.63 16 21 C -0.03 -0.30 9.62 -39.25 -0.38 -0.68 16 22 C -0.18 -2.07 5.89 -104.87 -0.62 -2.69 16 23 C 0.57 7.43 7.85 -12.98 -0.10 7.33 16 24 O -0.52 -7.79 17.20 5.24 0.09 -7.70 16 25 N -0.66 -8.18 5.10 -13.88 -0.07 -8.25 16 26 C 0.58 7.65 7.84 -13.04 -0.10 7.55 16 27 O -0.54 -8.28 14.51 5.15 0.07 -8.20 16 28 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 29 H 0.08 1.49 6.62 -51.93 -0.34 1.14 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 33 H 0.04 0.67 6.86 -51.93 -0.36 0.31 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.43 5.95 2.85 -40.83 -0.12 5.83 16 40 H 0.16 0.89 6.48 -52.48 -0.34 0.55 16 41 H 0.13 0.67 6.50 -52.49 -0.34 0.33 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 1.22 7.71 -52.49 -0.40 0.81 16 45 H 0.41 4.56 8.79 -40.82 -0.36 4.20 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -31.53 361.93 -8.11 -39.65 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.74 Total: 7.42 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.73 Total: -10.25 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.41 Total: -42.00 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.16 Total: -15.91 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.53 -8.11 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806551521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.378 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds