Wall clock time and date at job start Tue Mar 31 2020 15:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47166 * 240.00199 * 2 1 3 5 5 C 1.50697 * 109.47404 * 59.99939 * 4 2 1 6 6 H 1.08003 * 120.00041 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00266 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00124 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00073 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46945 * 89.99834 * 9 7 5 11 11 H 1.48497 * 109.46916 * 209.99979 * 9 7 5 12 12 H 1.48493 * 109.47007 * 330.00043 * 9 7 5 13 13 C 1.53002 * 109.47084 * 119.99801 * 2 1 3 14 14 N 1.46498 * 109.47425 * 300.00221 * 13 2 1 15 15 C 1.35856 * 120.00011 * 180.02562 * 14 13 2 16 16 C 1.37737 * 120.00159 * 174.33846 * 15 14 13 17 17 C 1.47771 * 120.99048 * 171.33196 * 16 15 14 18 18 C 1.39013 * 121.76867 * 0.02562 * 17 16 15 19 19 C 1.37985 * 119.57906 * 180.23138 * 18 17 16 20 20 C 1.38735 * 120.53736 * 359.97438 * 19 18 17 21 21 C 1.37823 * 120.72041 * 0.02562 * 20 19 18 22 22 C 1.39526 * 119.65598 * 359.97438 * 21 20 19 23 23 C 1.46870 * 121.39401 * 180.02562 * 22 21 20 24 24 O 1.21643 * 119.44601 * 359.97438 * 23 22 21 25 25 N 1.34297 * 121.10756 * 180.02562 * 23 22 21 26 26 C 1.34297 * 122.87775 * 359.94622 * 25 23 22 27 27 O 1.21742 * 119.66976 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.46896 * 299.99485 * 1 2 3 29 29 H 1.08996 * 109.47249 * 59.99899 * 1 2 3 30 30 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47459 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47280 * 300.00083 * 3 2 1 33 33 H 1.09006 * 109.47330 * 59.99903 * 3 2 1 34 34 H 1.09000 * 109.47440 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47487 * 300.00004 * 4 2 1 36 36 H 0.97000 * 120.00823 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.46561 * 180.02562 * 13 2 1 38 38 H 1.08993 * 109.46823 * 60.00823 * 13 2 1 39 39 H 0.96997 * 119.99813 * 359.97438 * 14 13 2 40 40 H 1.08003 * 120.00227 * 354.33301 * 15 14 13 41 41 H 1.08000 * 120.21065 * 0.21406 * 18 17 16 42 42 H 1.07995 * 119.72939 * 180.02562 * 19 18 17 43 43 H 1.07998 * 119.64218 * 180.02562 * 20 19 18 44 44 H 1.07992 * 120.16908 * 179.97438 * 21 20 19 45 45 H 0.96997 * 118.56207 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 1.4316 0.1376 -4.8057 9 14 2.9443 -2.0009 -3.9034 10 1 2.0858 -3.2117 -3.9482 11 1 3.7358 -1.9085 -5.1565 12 1 3.8651 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0307 2.4455 15 6 1.8803 -0.4945 3.6794 16 6 1.5203 0.2184 4.8015 17 6 1.6953 -0.3516 6.1536 18 6 2.2269 -1.6210 6.3496 19 6 2.3658 -2.1107 7.6321 20 6 1.9803 -1.3466 8.7241 21 6 1.4513 -0.0860 8.5497 22 6 1.3023 0.4280 7.2611 23 6 0.7436 1.7667 7.0313 24 8 0.4023 2.4437 7.9826 25 7 0.6023 2.2556 5.7885 26 6 0.9559 1.5684 4.6902 27 8 0.8024 2.0685 3.5909 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 1.6659 -0.1937 -5.6868 37 1 3.1301 -0.7208 1.2494 38 1 1.6768 -1.7488 1.2492 39 1 0.9943 0.7582 2.3564 40 1 2.4238 -1.4223 3.7804 41 1 2.5289 -2.2203 5.5034 42 1 2.7789 -3.0964 7.7872 43 1 2.0959 -1.7440 9.7216 44 1 1.1537 0.5009 9.4060 45 1 0.2287 3.1440 5.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806551521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:22 Heat of formation + Delta-G solvation = -62.593242 kcal Electronic energy + Delta-G solvation = -27366.339576 eV Core-core repulsion = 23540.365036 eV Total energy + Delta-G solvation = -3825.974540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.42057 -40.36552 -39.56747 -39.17883 -36.83649 -35.95224 -34.49434 -33.25501 -32.04493 -30.24225 -29.29081 -28.07546 -27.28804 -25.37626 -25.29603 -24.15071 -23.43860 -22.05572 -20.41628 -19.48368 -19.21598 -18.88210 -18.61369 -17.17865 -17.06633 -16.80324 -16.54272 -16.11748 -15.89538 -15.63014 -15.44721 -15.14730 -15.09210 -14.99029 -14.43854 -14.43187 -14.30677 -14.14713 -13.94832 -13.67416 -13.10692 -12.82791 -12.79992 -12.78041 -12.31762 -12.21632 -12.03832 -11.97000 -11.73181 -11.45822 -11.44126 -11.32912 -11.23370 -11.16620 -10.93353 -10.68693 -10.28639 -9.91557 -8.30446 -8.19740 -6.22057 -0.41736 0.30180 0.65427 1.41092 1.43383 1.49722 1.53522 1.86273 2.19654 2.31043 2.42527 3.13221 3.16045 3.19281 3.75242 3.76946 3.90366 3.95602 4.01605 4.08160 4.22152 4.38269 4.45791 4.52740 4.60038 4.67518 4.68185 4.81852 4.88288 4.89485 5.00281 5.03777 5.05371 5.16593 5.29846 5.32933 5.39519 5.45295 5.52806 5.56087 5.62511 5.62726 5.76088 5.87640 6.03593 6.12148 6.26207 6.40048 6.57116 6.86652 6.96474 7.40815 8.96721 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.002582 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.206043 B =10840.224624 C =11871.275602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.128 4.128 4 C 0.000 4.000 5 C -0.509 4.509 6 H 0.037 0.963 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.297 1.297 12 H -0.235 1.235 13 C 0.104 3.896 14 N -0.666 5.666 15 C 0.315 3.685 16 C -0.379 4.379 17 C 0.067 3.933 18 C -0.152 4.152 19 C -0.057 4.057 20 C -0.160 4.160 21 C -0.048 4.048 22 C -0.210 4.210 23 C 0.568 3.432 24 O -0.555 6.555 25 N -0.665 5.665 26 C 0.565 3.435 27 O -0.570 6.570 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.415 0.585 40 H 0.213 0.787 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.127 0.873 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -10.158 26.194 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.037 4.037 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.200 4.200 8 N -0.601 5.601 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.224 1.224 12 H -0.158 1.158 13 C -0.018 4.018 14 N -0.286 5.286 15 C 0.166 3.834 16 C -0.392 4.392 17 C 0.065 3.935 18 C -0.170 4.170 19 C -0.075 4.075 20 C -0.178 4.178 21 C -0.067 4.067 22 C -0.213 4.213 23 C 0.363 3.637 24 O -0.434 6.434 25 N -0.325 5.325 26 C 0.366 3.634 27 O -0.453 6.453 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.263 0.737 40 H 0.230 0.770 41 H 0.182 0.818 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.145 0.855 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.831 -9.812 25.675 27.907 hybrid contribution -0.553 1.307 -0.966 1.717 sum 4.277 -8.505 24.709 26.480 Atomic orbital electron populations 1.21726 0.95081 1.01620 1.00052 1.20551 0.95655 0.95552 0.94294 1.21728 1.00600 0.96082 1.00124 1.19554 0.96584 0.95773 0.91828 1.21430 1.30315 1.12145 0.90801 0.94510 1.26031 0.97689 1.00607 0.95624 1.70089 1.48355 1.43097 0.98584 0.85716 0.79572 0.79400 0.78254 1.19437 1.22382 1.15762 1.22155 1.00705 0.97023 0.81933 1.46158 1.46360 1.31087 1.04945 1.22845 0.83649 0.94767 0.82120 1.19233 1.30177 0.96390 0.93351 1.18588 0.92048 0.93617 0.89291 1.21310 1.02365 0.94037 0.99311 1.21762 0.93917 1.00305 0.91544 1.21374 1.01624 0.93733 1.01044 1.21186 0.94655 0.96070 0.94752 1.19552 1.11780 0.94031 0.95959 1.18599 0.76223 0.87507 0.81385 1.90801 1.50280 1.60971 1.41378 1.44540 1.59097 1.21356 1.07543 1.18567 0.75852 0.86581 0.82417 1.90575 1.57302 1.71283 1.26119 0.93507 0.94525 0.92006 0.92683 0.94597 0.93299 0.95345 0.95186 0.93001 0.88376 0.87583 0.73704 0.77048 0.81788 0.81919 0.83138 0.85529 0.75028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.05 71.98 0.58 -3.64 16 2 C -0.06 -1.90 0.54 -52.18 -0.03 -1.92 16 3 C -0.13 -4.43 8.05 71.98 0.58 -3.85 16 4 C 0.00 0.02 3.11 29.84 0.09 0.11 16 5 C -0.51 -26.62 8.20 25.60 0.21 -26.41 16 6 H 0.04 2.18 5.92 -2.91 -0.02 2.16 16 7 C 0.00 -0.23 5.47 84.65 0.46 0.24 16 8 N -0.96 -58.71 13.96 21.45 0.30 -58.41 16 9 Si 0.95 40.97 27.47 68.60 1.88 42.85 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 13 C 0.10 2.10 5.14 86.38 0.44 2.54 16 14 N -0.67 -13.36 4.77 -345.27 -1.65 -15.01 16 15 C 0.31 4.50 9.99 83.95 0.84 5.34 16 16 C -0.38 -7.51 6.04 -18.65 -0.11 -7.62 16 17 C 0.07 1.18 5.90 -19.89 -0.12 1.07 16 18 C -0.15 -1.56 9.48 22.40 0.21 -1.35 16 19 C -0.06 -0.49 10.03 22.33 0.22 -0.26 16 20 C -0.16 -1.86 10.01 22.29 0.22 -1.64 16 21 C -0.05 -0.87 9.62 22.48 0.22 -0.66 16 22 C -0.21 -4.67 5.89 -20.03 -0.12 -4.79 16 23 C 0.57 15.41 7.85 86.58 0.68 16.09 16 24 O -0.55 -17.75 17.20 -4.17 -0.07 -17.82 16 25 N -0.67 -17.25 5.10 -434.79 -2.22 -19.47 16 26 C 0.57 14.97 7.84 86.54 0.68 15.64 16 27 O -0.57 -17.80 14.51 -4.48 -0.07 -17.87 16 28 H 0.05 1.41 6.86 -2.39 -0.02 1.39 16 29 H 0.04 1.48 6.62 -2.39 -0.02 1.46 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.03 1.49 6.62 -2.39 -0.02 1.48 16 33 H 0.05 1.60 6.86 -2.38 -0.02 1.58 16 34 H 0.03 1.07 7.20 -2.39 -0.02 1.06 16 35 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.41 10.85 2.85 -92.83 -0.26 10.58 16 40 H 0.21 0.73 6.48 -2.91 -0.02 0.71 16 41 H 0.16 0.44 6.50 -2.91 -0.02 0.42 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 43 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.13 2.37 7.71 -2.91 -0.02 2.35 16 45 H 0.41 10.02 8.79 -92.71 -0.82 9.20 16 Total: -1.00 -75.44 361.93 3.16 -72.28 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.09 Total: 24.55 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.07 Total: -11.11 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.56 Total: -92.89 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.14 Total: -35.68 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Total: -75.44 3.16 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806551521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds