Wall clock time and date at job start Tue Mar 31 2020 15:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43189 * 179.97438 * 2 1 4 4 C 1.39603 * 120.10471 * 49.32663 * 3 2 1 5 5 C 1.38011 * 120.00629 * 179.97438 * 4 3 2 6 6 C 1.38224 * 120.22727 * 359.97438 * 5 4 3 7 7 C 1.39006 * 120.20882 * 0.04029 * 6 5 4 8 8 N 1.39746 * 120.00260 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99691 * 213.31473 * 8 7 6 10 10 O 1.21380 * 120.00323 * 5.27977 * 9 8 7 11 11 C 1.49349 * 119.99974 * 185.27781 * 9 8 7 12 12 O 1.21363 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34785 * 120.00121 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00148 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47019 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46998 * 299.99909 * 15 14 13 17 17 C 1.52998 * 109.47367 * 60.00199 * 15 14 13 18 18 C 1.53001 * 109.47015 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47362 * 179.97438 * 18 15 14 20 20 H 1.08005 * 119.99993 * 0.02562 * 19 18 15 21 21 C 1.37875 * 120.00305 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99751 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47072 * 60.00299 * 23 21 19 25 25 H 1.48496 * 109.47219 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47399 * 300.00647 * 23 21 19 27 27 C 1.38700 * 119.98538 * 359.96084 * 7 6 5 28 28 H 4.52048 * 14.03277 * 359.97438 * 4 2 1 29 29 H 1.07992 * 119.99615 * 359.95094 * 4 3 2 30 30 H 1.08006 * 119.88768 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89320 * 180.02562 * 6 5 4 32 32 H 0.96996 * 119.99780 * 33.32415 * 8 7 6 33 33 H 0.97001 * 119.99865 * 0.02562 * 13 11 9 34 34 H 1.09003 * 109.46829 * 300.00627 * 14 13 11 35 35 H 1.08995 * 109.46956 * 60.00083 * 14 13 11 36 36 H 1.08994 * 109.47414 * 60.00486 * 16 15 14 37 37 H 1.09003 * 109.47123 * 180.02562 * 16 15 14 38 38 H 1.09006 * 109.47204 * 299.99819 * 16 15 14 39 39 H 1.09003 * 109.47174 * 60.00095 * 17 15 14 40 40 H 1.09003 * 109.47042 * 179.97438 * 17 15 14 41 41 H 1.08994 * 109.46736 * 299.99968 * 17 15 14 42 42 H 1.09007 * 109.47096 * 300.00179 * 18 15 14 43 43 H 1.08998 * 109.47684 * 59.99649 * 18 15 14 44 44 H 0.97006 * 119.99772 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.10521 * 180.29859 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3065 -0.7862 -0.9160 5 6 4.6866 -0.7836 -0.9145 6 6 5.3801 -0.0033 -0.0085 7 6 4.6918 0.7834 0.9078 8 7 5.3972 1.5710 1.8215 9 6 4.8965 1.7848 3.0543 10 8 3.8824 1.2171 3.4044 11 6 5.5894 2.7203 3.9899 12 8 6.6031 3.2884 3.6398 13 7 5.0889 2.9337 5.2230 14 6 5.7689 3.8510 6.1409 15 6 5.0009 3.9121 7.4627 16 6 3.5783 4.4118 7.2033 17 6 4.9454 2.5156 8.0854 18 6 5.7107 4.8705 8.4211 19 6 4.9540 4.9312 9.7229 20 1 4.0566 4.3445 9.8538 21 6 5.4076 5.7349 10.7472 22 7 6.5005 6.4489 10.5880 23 14 4.4692 5.8107 12.3606 24 1 4.4142 4.4556 12.9654 25 1 5.1582 6.7408 13.2908 26 1 3.0887 6.2963 12.1080 27 6 3.3048 0.7874 0.9141 28 1 -1.0500 -0.0008 -0.0001 29 1 2.7685 -1.3972 -1.6255 30 1 5.2267 -1.3934 -1.6238 31 1 6.4601 -0.0051 -0.0124 32 1 6.2471 1.9639 1.5683 33 1 4.2789 2.4795 5.5030 34 1 6.7823 3.4947 6.3259 35 1 5.8089 4.8457 5.6972 36 1 3.0723 3.7294 6.5205 37 1 3.0312 4.4558 8.1451 38 1 3.6178 5.4067 6.7598 39 1 5.9589 2.1596 8.2702 40 1 4.3986 2.5593 9.0274 41 1 4.4395 1.8332 7.4025 42 1 6.7245 4.5149 8.6060 43 1 5.7500 5.8653 7.9774 44 1 6.8199 7.0141 11.3089 45 1 2.7680 1.4017 1.6220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807516031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:59 Heat of formation + Delta-G solvation = 0.024911 kcal Electronic energy + Delta-G solvation = -26446.199003 eV Core-core repulsion = 22622.939790 eV Total energy + Delta-G solvation = -3823.259213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.26542 -39.72671 -38.49624 -37.24707 -35.62721 -33.91686 -33.57628 -32.12883 -30.75837 -30.07426 -27.42435 -26.81862 -26.55305 -24.85108 -23.94712 -23.07646 -22.05688 -20.38850 -19.74783 -19.00302 -17.74075 -17.24366 -16.86011 -16.35661 -16.25609 -16.17569 -15.47778 -15.10122 -14.79770 -14.53870 -14.50151 -14.04903 -13.87246 -13.67156 -13.34897 -13.18504 -12.83236 -12.39444 -12.24509 -12.10678 -12.08537 -11.78378 -11.57757 -11.22651 -11.03075 -10.89457 -10.84476 -10.66711 -10.66307 -10.48691 -10.30718 -9.94118 -9.82331 -9.23579 -9.04193 -9.00947 -8.98436 -8.55361 -8.38425 -6.02781 -4.04179 0.49039 0.81062 1.39557 2.11731 2.44562 2.64293 3.08937 3.30992 3.36339 3.37716 3.47398 3.65275 3.92023 4.35147 4.43664 4.52352 4.68261 4.77594 5.05214 5.10944 5.25511 5.32609 5.35654 5.51589 5.68148 5.70940 5.79217 5.87834 6.02099 6.08925 6.09395 6.10735 6.14919 6.30224 6.31447 6.51286 6.59311 6.63093 6.72878 6.99978 7.02650 7.05461 7.20654 7.26605 7.54235 7.59018 7.70385 7.92619 7.95583 8.36902 9.00028 9.59111 11.08541 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.002093 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.892968 B =13373.189824 C =14243.486853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.150 4.150 3 C 0.028 3.972 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.132 4.132 7 C 0.147 3.853 8 N -0.648 5.648 9 C 0.509 3.491 10 O -0.497 6.497 11 C 0.502 3.498 12 O -0.523 6.523 13 N -0.683 5.683 14 C 0.124 3.876 15 C -0.073 4.073 16 C -0.130 4.130 17 C -0.130 4.130 18 C 0.037 3.963 19 C -0.512 4.512 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.097 4.097 28 H 0.225 0.775 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.425 0.575 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -13.719 -23.515 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.150 4.150 3 C 0.028 3.972 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.152 4.152 7 C 0.053 3.947 8 N -0.295 5.295 9 C 0.291 3.709 10 O -0.370 6.370 11 C 0.281 3.719 12 O -0.400 6.400 13 N -0.336 5.336 14 C 0.002 3.998 15 C -0.073 4.073 16 C -0.188 4.188 17 C -0.188 4.188 18 C 0.000 4.000 19 C -0.551 4.551 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.117 4.117 28 H 0.242 0.758 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.264 0.736 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.259 -13.516 -23.319 27.462 hybrid contribution -0.537 0.121 1.002 1.143 sum -5.796 -13.396 -22.318 26.667 Atomic orbital electron populations 1.24916 0.95782 0.98955 0.99046 1.19933 0.91946 1.01629 1.01530 1.15740 0.86748 0.98191 0.96553 1.21208 0.94190 0.99074 0.98444 1.20872 0.93665 0.98615 0.98499 1.21061 1.00410 0.96666 0.97043 1.17557 0.91021 0.94255 0.91823 1.43175 1.25176 1.49494 1.11701 1.20597 0.85218 0.82501 0.82589 1.90800 1.23790 1.46949 1.75476 1.19715 0.85395 0.83236 0.83528 1.90782 1.23969 1.49346 1.75892 1.46082 1.29573 1.45223 1.12675 1.21888 0.96390 0.92350 0.89175 1.20942 0.95810 0.97778 0.92797 1.21796 0.96023 0.99533 1.01402 1.21795 1.01413 0.94763 1.00788 1.19091 0.95319 0.93031 0.92602 1.21130 1.10187 1.25687 0.98050 0.92254 1.25012 0.95089 0.95707 0.98690 1.69954 1.22263 1.28161 1.32987 0.86691 0.80000 0.77856 0.83636 1.20309 1.21406 1.20313 1.21201 0.92335 0.99588 0.98568 0.75798 0.85360 0.84801 0.84919 0.73635 0.75054 0.90929 0.90927 0.95071 0.91168 0.93229 0.93226 0.91171 0.95055 0.96239 0.96236 0.92959 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 19.25 29.55 0.57 -0.86 16 2 C -0.15 -1.58 13.24 -38.84 -0.51 -2.09 16 3 C 0.03 0.30 5.72 -107.04 -0.61 -0.32 16 4 C -0.11 -0.89 9.75 -39.16 -0.38 -1.28 16 5 C -0.10 -0.67 10.02 -39.67 -0.40 -1.06 16 6 C -0.13 -1.01 9.95 -39.30 -0.39 -1.40 16 7 C 0.15 1.49 6.27 -83.79 -0.53 0.97 16 8 N -0.65 -6.68 5.32 -10.33 -0.05 -6.73 16 9 C 0.51 6.51 7.62 -11.64 -0.09 6.43 16 10 O -0.50 -7.24 14.16 5.47 0.08 -7.16 16 11 C 0.50 7.17 7.89 -11.63 -0.09 7.07 16 12 O -0.52 -8.41 16.48 5.49 0.09 -8.32 16 13 N -0.68 -9.92 4.95 -60.76 -0.30 -10.23 16 14 C 0.12 2.07 4.56 -4.04 -0.02 2.05 16 15 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 16 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 17 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 18 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 19 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 20 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 23 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.10 -1.11 8.35 -38.98 -0.33 -1.43 16 28 H 0.23 0.98 7.80 -54.09 -0.42 0.56 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.43 3.58 8.29 -40.82 -0.34 3.24 16 33 H 0.41 5.66 5.63 -40.82 -0.23 5.43 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 37 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 41 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 42 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.14 1.79 6.42 -52.48 -0.34 1.45 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -31.37 383.59 -7.39 -38.76 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.97 Total: 5.85 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.74 Total: -8.70 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.38 Total: -42.23 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.17 Total: -15.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.37 -7.39 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807516031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.789 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds