Wall clock time and date at job start Tue Mar 31 2020 15:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43189 * 179.97438 * 2 1 4 4 C 1.39603 * 120.10471 * 49.32663 * 3 2 1 5 5 C 1.38011 * 120.00629 * 179.97438 * 4 3 2 6 6 C 1.38224 * 120.22727 * 359.97438 * 5 4 3 7 7 C 1.39006 * 120.20882 * 0.04029 * 6 5 4 8 8 N 1.39746 * 120.00260 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99691 * 213.31473 * 8 7 6 10 10 O 1.21380 * 120.00323 * 5.27977 * 9 8 7 11 11 C 1.49349 * 119.99974 * 185.27781 * 9 8 7 12 12 O 1.21363 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34785 * 120.00121 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00148 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47019 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46998 * 299.99909 * 15 14 13 17 17 C 1.52998 * 109.47367 * 60.00199 * 15 14 13 18 18 C 1.53001 * 109.47015 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47362 * 179.97438 * 18 15 14 20 20 H 1.08005 * 119.99993 * 0.02562 * 19 18 15 21 21 C 1.37875 * 120.00305 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99751 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47072 * 60.00299 * 23 21 19 25 25 H 1.48496 * 109.47219 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47399 * 300.00647 * 23 21 19 27 27 C 1.38700 * 119.98538 * 359.96084 * 7 6 5 28 28 H 4.52048 * 14.03277 * 359.97438 * 4 2 1 29 29 H 1.07992 * 119.99615 * 359.95094 * 4 3 2 30 30 H 1.08006 * 119.88768 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89320 * 180.02562 * 6 5 4 32 32 H 0.96996 * 119.99780 * 33.32415 * 8 7 6 33 33 H 0.97001 * 119.99865 * 0.02562 * 13 11 9 34 34 H 1.09003 * 109.46829 * 300.00627 * 14 13 11 35 35 H 1.08995 * 109.46956 * 60.00083 * 14 13 11 36 36 H 1.08994 * 109.47414 * 60.00486 * 16 15 14 37 37 H 1.09003 * 109.47123 * 180.02562 * 16 15 14 38 38 H 1.09006 * 109.47204 * 299.99819 * 16 15 14 39 39 H 1.09003 * 109.47174 * 60.00095 * 17 15 14 40 40 H 1.09003 * 109.47042 * 179.97438 * 17 15 14 41 41 H 1.08994 * 109.46736 * 299.99968 * 17 15 14 42 42 H 1.09007 * 109.47096 * 300.00179 * 18 15 14 43 43 H 1.08998 * 109.47684 * 59.99649 * 18 15 14 44 44 H 0.97006 * 119.99772 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.10521 * 180.29859 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3065 -0.7862 -0.9160 5 6 4.6866 -0.7836 -0.9145 6 6 5.3801 -0.0033 -0.0085 7 6 4.6918 0.7834 0.9078 8 7 5.3972 1.5710 1.8215 9 6 4.8965 1.7848 3.0543 10 8 3.8824 1.2171 3.4044 11 6 5.5894 2.7203 3.9899 12 8 6.6031 3.2884 3.6398 13 7 5.0889 2.9337 5.2230 14 6 5.7689 3.8510 6.1409 15 6 5.0009 3.9121 7.4627 16 6 3.5783 4.4118 7.2033 17 6 4.9454 2.5156 8.0854 18 6 5.7107 4.8705 8.4211 19 6 4.9540 4.9312 9.7229 20 1 4.0566 4.3445 9.8538 21 6 5.4076 5.7349 10.7472 22 7 6.5005 6.4489 10.5880 23 14 4.4692 5.8107 12.3606 24 1 4.4142 4.4556 12.9654 25 1 5.1582 6.7408 13.2908 26 1 3.0887 6.2963 12.1080 27 6 3.3048 0.7874 0.9141 28 1 -1.0500 -0.0008 -0.0001 29 1 2.7685 -1.3972 -1.6255 30 1 5.2267 -1.3934 -1.6238 31 1 6.4601 -0.0051 -0.0124 32 1 6.2471 1.9639 1.5683 33 1 4.2789 2.4795 5.5030 34 1 6.7823 3.4947 6.3259 35 1 5.8089 4.8457 5.6972 36 1 3.0723 3.7294 6.5205 37 1 3.0312 4.4558 8.1451 38 1 3.6178 5.4067 6.7598 39 1 5.9589 2.1596 8.2702 40 1 4.3986 2.5593 9.0274 41 1 4.4395 1.8332 7.4025 42 1 6.7245 4.5149 8.6060 43 1 5.7500 5.8653 7.9774 44 1 6.8199 7.0141 11.3089 45 1 2.7680 1.4017 1.6220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807516031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:57 Heat of formation + Delta-G solvation = -19.015652 kcal Electronic energy + Delta-G solvation = -26447.024663 eV Core-core repulsion = 22622.939790 eV Total energy + Delta-G solvation = -3824.084874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24759 -40.71199 -39.47405 -38.68906 -36.51957 -35.28343 -34.43468 -33.93909 -31.43921 -30.80514 -29.22364 -28.22594 -27.99910 -26.09515 -24.73560 -24.53541 -23.06323 -21.46277 -20.65306 -20.08511 -19.06318 -18.36385 -18.14153 -17.61728 -17.27051 -17.05211 -16.64277 -16.39967 -16.11308 -15.64716 -15.55069 -15.16996 -14.92870 -14.76977 -14.51509 -14.38230 -14.24160 -13.94870 -13.77725 -13.18917 -12.86411 -12.78234 -12.74979 -12.67728 -12.62791 -12.33987 -12.32754 -12.24265 -12.03084 -11.56950 -11.54313 -11.40562 -11.14207 -10.91284 -10.74752 -10.49573 -10.32538 -9.69981 -9.26532 -8.13463 -6.20461 -0.23463 0.01513 0.50416 1.11082 1.43349 1.44609 1.51864 1.74902 1.88516 2.09866 2.42646 2.49561 2.96465 3.21093 3.21488 3.36815 3.88407 3.91484 4.03704 4.10494 4.17329 4.18289 4.40669 4.42180 4.63833 4.64729 4.67537 4.69475 4.92425 4.97917 5.09612 5.10089 5.13829 5.18589 5.20986 5.36651 5.40788 5.45312 5.49084 5.50565 5.55713 5.76610 5.78200 5.89705 5.90683 6.20206 6.32347 6.54476 6.57447 6.78272 6.93795 7.46818 8.98460 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.002093 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.892968 B =13373.189824 C =14243.486853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.202 4.202 3 C 0.009 3.991 4 C -0.110 4.110 5 C -0.089 4.089 6 C -0.124 4.124 7 C 0.127 3.873 8 N -0.633 5.633 9 C 0.514 3.486 10 O -0.517 6.517 11 C 0.507 3.493 12 O -0.541 6.541 13 N -0.678 5.678 14 C 0.137 3.863 15 C -0.065 4.065 16 C -0.126 4.126 17 C -0.125 4.125 18 C 0.042 3.958 19 C -0.515 4.515 20 H 0.070 0.930 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.956 3.044 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.269 1.269 27 C -0.120 4.120 28 H 0.259 0.741 29 H 0.147 0.853 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.434 0.566 33 H 0.418 0.582 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.062 0.938 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.260 0.740 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -15.831 -25.204 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.202 4.202 3 C 0.008 3.992 4 C -0.128 4.128 5 C -0.107 4.107 6 C -0.144 4.144 7 C 0.034 3.966 8 N -0.281 5.281 9 C 0.296 3.704 10 O -0.392 6.392 11 C 0.287 3.713 12 O -0.419 6.419 13 N -0.331 5.331 14 C 0.014 3.986 15 C -0.066 4.066 16 C -0.183 4.183 17 C -0.183 4.183 18 C 0.004 3.996 19 C -0.553 4.553 20 H 0.088 0.912 21 C -0.201 4.201 22 N -0.577 5.577 23 Si 0.782 3.218 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.194 1.194 27 C -0.140 4.140 28 H 0.276 0.724 29 H 0.165 0.835 30 H 0.188 0.812 31 H 0.178 0.822 32 H 0.274 0.726 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.068 0.932 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.356 -15.651 -25.042 30.207 hybrid contribution -0.218 0.735 1.389 1.587 sum -6.574 -14.916 -23.653 28.726 Atomic orbital electron populations 1.25820 0.96616 0.97077 0.97167 1.20477 0.92874 1.03450 1.03360 1.15986 0.87216 0.98814 0.97178 1.21535 0.95031 0.98347 0.97876 1.21318 0.93226 0.97918 0.98262 1.21410 1.01809 0.95383 0.95794 1.17745 0.90746 0.95440 0.92707 1.43051 1.25212 1.48979 1.10813 1.20192 0.84880 0.82221 0.83085 1.90800 1.24574 1.47856 1.75988 1.19942 0.84986 0.82987 0.83390 1.90774 1.24817 1.50079 1.76231 1.45883 1.29661 1.44937 1.12626 1.21528 0.95907 0.92504 0.88703 1.20733 0.96093 0.97214 0.92540 1.21732 0.95098 1.00037 1.01414 1.21730 1.01328 0.94424 1.00789 1.18954 0.94412 0.92889 0.93339 1.21547 1.10240 1.24840 0.98658 0.91223 1.25899 0.96019 0.95680 1.02456 1.70099 1.24125 1.29377 1.34053 0.85634 0.78804 0.78062 0.79339 1.19318 1.21661 1.19355 1.21114 0.93091 1.00566 0.99199 0.72442 0.83475 0.81162 0.82195 0.72581 0.74336 0.91632 0.91737 0.91978 0.92449 0.93832 0.93762 0.92463 0.91957 0.98952 0.98998 0.93165 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 19.25 74.32 1.43 -0.90 16 2 C -0.20 -4.18 13.24 30.01 0.40 -3.79 16 3 C 0.01 0.18 5.72 -21.43 -0.12 0.06 16 4 C -0.11 -1.56 9.75 22.55 0.22 -1.34 16 5 C -0.09 -0.93 10.02 22.21 0.22 -0.71 16 6 C -0.12 -1.58 9.95 22.45 0.22 -1.36 16 7 C 0.13 2.46 6.27 38.17 0.24 2.70 16 8 N -0.63 -12.53 5.32 -304.94 -1.62 -14.16 16 9 C 0.51 12.95 7.62 87.24 0.66 13.62 16 10 O -0.52 -14.99 14.16 -3.34 -0.05 -15.04 16 11 C 0.51 14.20 7.89 87.24 0.69 14.89 16 12 O -0.54 -17.19 16.48 -3.29 -0.05 -17.24 16 13 N -0.68 -19.20 4.95 -464.51 -2.30 -21.50 16 14 C 0.14 4.58 4.56 86.38 0.39 4.97 16 15 C -0.07 -2.42 0.54 -52.18 -0.03 -2.45 16 16 C -0.13 -4.28 8.05 71.98 0.58 -3.70 16 17 C -0.13 -4.26 8.05 71.98 0.58 -3.68 16 18 C 0.04 2.05 4.04 29.85 0.12 2.17 16 19 C -0.51 -27.22 7.65 25.60 0.20 -27.02 16 20 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 21 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 22 N -0.94 -55.96 13.29 21.45 0.28 -55.67 16 23 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C -0.12 -2.77 8.35 22.66 0.19 -2.58 16 28 H 0.26 1.60 7.80 -4.42 -0.03 1.57 16 29 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 32 H 0.43 6.79 8.29 -92.71 -0.77 6.02 16 33 H 0.42 10.87 5.63 -92.71 -0.52 10.34 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 37 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 41 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 42 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 45 H 0.12 3.15 6.42 -2.91 -0.02 3.13 16 Total: -1.00 -70.22 383.59 4.48 -65.74 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.26 Total: 21.29 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 6.46 Total: -8.85 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -3.64 Total: -91.33 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.10 Total: -32.28 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.22 4.48 -65.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807516031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.722 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds