Wall clock time and date at job start Tue Mar 31 2020 15:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.53004 * 109.47507 * 239.99776 * 2 1 3 5 5 C 1.50699 * 109.47067 * 119.99715 * 2 1 3 6 6 N 1.30428 * 125.99421 * 237.38922 * 5 2 1 7 7 N 1.39929 * 108.91832 * 180.02562 * 6 5 2 8 8 H 0.97001 * 125.74240 * 180.02562 * 7 6 5 9 9 C 1.34220 * 108.51362 * 359.72953 * 7 6 5 10 10 C 1.38121 * 107.40751 * 0.43026 * 9 7 6 11 11 C 1.47294 * 126.42424 * 179.83003 * 10 9 7 12 12 O 1.21526 * 119.99401 * 185.88642 * 11 10 9 13 13 O 1.34745 * 120.00291 * 5.89530 * 11 10 9 14 14 C 1.45199 * 117.00205 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.38639 * 119.75239 * 269.72977 * 15 14 13 17 17 C 1.37620 * 120.24675 * 179.71896 * 16 15 14 18 18 C 1.40718 * 119.74482 * 0.57539 * 17 16 15 19 19 C 1.41393 * 120.24443 * 179.67670 * 18 17 16 20 20 H 1.08002 * 120.00378 * 209.31934 * 19 18 17 21 21 C 1.39951 * 119.99496 * 29.32072 * 19 18 17 22 22 N 1.30822 * 120.00213 * 10.51729 * 21 19 18 23 23 Si 1.86810 * 119.99711 * 190.51737 * 21 19 18 24 24 H 1.48495 * 109.47178 * 89.99662 * 23 21 19 25 25 H 1.48493 * 109.47156 * 209.99970 * 23 21 19 26 26 H 1.48504 * 109.46696 * 330.00132 * 23 21 19 27 27 C 1.40711 * 119.51029 * 359.69961 * 18 17 16 28 28 C 1.37620 * 119.74735 * 0.02562 * 27 18 17 29 29 H 1.08991 * 109.47379 * 308.02639 * 1 2 3 30 30 H 1.09001 * 109.47223 * 68.03085 * 1 2 3 31 31 H 1.09004 * 109.47058 * 188.02688 * 1 2 3 32 32 H 1.09000 * 109.47108 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46983 * 299.99867 * 3 2 1 34 34 H 1.08998 * 109.46915 * 59.99730 * 3 2 1 35 35 H 1.09003 * 109.46899 * 305.11423 * 4 2 1 36 36 H 1.08998 * 109.46873 * 65.10726 * 4 2 1 37 37 H 1.08994 * 109.47685 * 185.10994 * 4 2 1 38 38 H 1.08005 * 126.29389 * 180.29330 * 9 7 6 39 39 H 1.08998 * 109.47366 * 299.99945 * 14 13 11 40 40 H 1.09001 * 109.46841 * 60.00042 * 14 13 11 41 41 H 1.07995 * 119.87204 * 359.97438 * 16 15 14 42 42 H 1.07993 * 120.12466 * 180.27631 * 17 16 15 43 43 H 0.97001 * 119.99472 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.12538 * 179.97438 * 27 18 17 45 45 H 1.07999 * 119.87209 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.8240 -0.2071 2.1366 7 7 3.0615 -1.1744 3.1194 8 1 3.6168 -1.0583 3.9062 9 6 2.3865 -2.2878 2.7935 10 6 1.7287 -2.0391 1.6047 11 6 0.8672 -2.9800 0.8684 12 8 0.4298 -2.6759 -0.2238 13 8 0.5640 -4.1778 1.4060 14 6 -0.2904 -5.0538 0.6244 15 6 -0.5183 -6.3379 1.3796 16 6 0.3459 -7.4064 1.1965 17 6 0.1507 -8.5817 1.8853 18 6 -0.9380 -8.7006 2.7689 19 6 -1.1524 -9.9057 3.4767 20 1 -2.1539 -10.1953 3.7590 21 6 -0.0669 -10.7231 3.8115 22 7 1.1554 -10.2832 3.6570 23 14 -0.3634 -12.4424 4.4792 24 1 -0.4235 -13.4075 3.3522 25 1 0.7457 -12.8168 5.3928 26 1 -1.6483 -12.4697 5.2232 27 6 -1.8119 -7.6115 2.9424 28 6 -1.5941 -6.4438 2.2475 29 1 -0.3633 0.6330 0.8094 30 1 -0.3634 0.3845 -0.9530 31 1 -0.3633 -1.0176 0.1435 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6039 -1.7191 -1.2962 36 1 1.7534 -0.1574 -2.1368 37 1 3.1262 -0.8013 -1.2047 38 1 2.3639 -3.2095 3.3560 39 1 -1.2469 -4.5630 0.4448 40 1 0.1899 -5.2738 -0.3290 41 1 1.1778 -7.3146 0.5140 42 1 0.8277 -9.4113 1.7445 43 1 1.9077 -10.8500 3.8888 44 1 -2.6509 -7.6921 3.6178 45 1 -2.2639 -5.6068 2.3789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815320188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:05 Heat of formation + Delta-G solvation = -5.603450 kcal Electronic energy + Delta-G solvation = -27154.673255 eV Core-core repulsion = 23331.169978 eV Total energy + Delta-G solvation = -3823.503277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69505 -39.61811 -37.70981 -36.97822 -35.66505 -33.82764 -31.26907 -31.04874 -30.37531 -29.39023 -27.29195 -27.14237 -27.05588 -24.27233 -23.07017 -22.78511 -21.09851 -20.52319 -20.03694 -18.37881 -18.29357 -17.38705 -16.94027 -16.03168 -15.93138 -15.34203 -15.04678 -14.99768 -14.33939 -14.17319 -14.02662 -13.85927 -13.51941 -13.27101 -12.71298 -12.59256 -12.29414 -12.14090 -12.03878 -12.02418 -11.75054 -11.51469 -11.34600 -11.21003 -11.16602 -11.01672 -11.00288 -10.85623 -10.55654 -10.42588 -10.01993 -9.86044 -9.69017 -9.67301 -9.44426 -9.30392 -8.96998 -7.57391 -7.41401 -6.81233 -4.49085 1.33652 1.97893 2.38406 2.57234 2.97093 2.99999 3.03195 3.05767 3.29505 3.49673 3.86822 4.24845 4.51750 4.58073 4.90236 5.01286 5.07245 5.30323 5.37011 5.47024 5.61042 5.64676 5.69096 5.71631 5.73348 5.85290 5.91092 5.96285 6.06581 6.08691 6.12016 6.23580 6.30624 6.33702 6.45080 6.50028 6.85299 6.91189 6.98959 7.06497 7.16499 7.25731 7.36960 7.51467 7.71832 7.95746 7.98726 8.19207 8.23127 8.54063 8.79096 8.85440 10.12358 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002386 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.375744 B =11732.539521 C =12289.642914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.016 3.984 3 C -0.136 4.136 4 C -0.153 4.153 5 C 0.151 3.849 6 N -0.299 5.299 7 N -0.465 5.465 8 H 0.445 0.555 9 C 0.136 3.864 10 C -0.276 4.276 11 C 0.533 3.467 12 O -0.510 6.510 13 O -0.349 6.349 14 C 0.138 3.862 15 C -0.228 4.228 16 C -0.079 4.079 17 C -0.162 4.162 18 C 0.118 3.882 19 C -0.459 4.459 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.796 5.796 23 Si 0.913 3.087 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.225 4.225 28 C -0.067 4.067 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.197 0.803 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.281 0.719 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 15.233 -2.677 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.194 4.194 4 C -0.211 4.211 5 C -0.017 4.017 6 N -0.120 5.120 7 N -0.168 5.168 8 H 0.290 0.710 9 C -0.017 4.017 10 C -0.289 4.289 11 C 0.379 3.621 12 O -0.402 6.402 13 O -0.266 6.266 14 C 0.066 3.934 15 C -0.229 4.229 16 C -0.098 4.098 17 C -0.182 4.182 18 C 0.115 3.885 19 C -0.488 4.488 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.422 5.422 23 Si 0.737 3.263 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.245 4.245 28 C -0.086 4.086 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.214 0.786 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.799 16.231 -2.569 17.119 hybrid contribution -0.080 -1.491 0.704 1.650 sum 4.720 14.740 -1.865 15.589 Atomic orbital electron populations 1.22094 0.92712 1.04544 1.01333 1.19019 0.96253 0.94028 0.89272 1.21825 1.01275 0.94551 1.01700 1.22156 1.00328 1.03707 0.94896 1.22441 0.92941 0.91179 0.95152 1.77151 1.21633 1.12902 1.00292 1.46155 1.39173 1.09615 1.21885 0.71029 1.23471 0.90703 0.92362 0.95143 1.19491 1.12704 0.96133 1.00554 1.20003 0.77843 0.80688 0.83564 1.90610 1.52280 1.76363 1.20923 1.86747 1.63793 1.25904 1.50108 1.21709 0.91869 0.87216 0.92624 1.18732 1.01714 0.93549 1.08931 1.20574 0.96643 0.93857 0.98689 1.21343 1.01371 0.97370 0.98096 1.17705 0.90391 0.91664 0.88736 1.19656 0.94465 1.03449 1.31271 0.90306 1.25935 0.94590 0.99883 0.94080 1.69790 0.99318 1.36605 1.36462 0.86236 0.79171 0.81573 0.79301 1.19258 1.20251 1.18606 1.21035 1.04056 0.94063 1.05325 1.20412 0.96188 0.96549 0.95442 0.93541 0.92059 0.89437 0.92424 0.92295 0.92517 0.88471 0.92327 0.93593 0.78584 0.92000 0.91939 0.89251 0.86122 0.90807 0.88707 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.19 37.16 0.30 -1.51 16 2 C 0.02 0.20 0.75 -155.66 -0.12 0.08 16 3 C -0.14 -1.40 7.95 37.16 0.30 -1.10 16 4 C -0.15 -1.86 8.27 37.16 0.31 -1.55 16 5 C 0.15 2.02 5.64 -82.01 -0.46 1.55 16 6 N -0.30 -3.73 11.93 33.90 0.40 -3.33 16 7 N -0.46 -4.49 7.28 30.86 0.22 -4.27 16 8 H 0.44 2.59 8.96 -182.73 -1.64 0.95 16 9 C 0.14 1.50 11.86 -16.55 -0.20 1.31 16 10 C -0.28 -3.84 5.94 -105.08 -0.62 -4.46 16 11 C 0.53 8.52 7.47 34.41 0.26 8.78 16 12 O -0.51 -8.45 10.03 -19.29 -0.19 -8.64 16 13 O -0.35 -6.15 10.04 -40.61 -0.41 -6.56 16 14 C 0.14 2.50 5.59 36.01 0.20 2.70 16 15 C -0.23 -4.83 5.54 -104.33 -0.58 -5.41 16 16 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 17 C -0.16 -4.06 8.66 -38.87 -0.34 -4.40 16 18 C 0.12 3.02 5.54 -106.83 -0.59 2.43 16 19 C -0.46 -11.73 9.06 -37.74 -0.34 -12.07 16 20 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 21 C 0.07 1.76 5.26 -17.34 -0.09 1.67 16 22 N -0.80 -19.90 10.87 55.55 0.60 -19.29 16 23 Si 0.91 18.08 29.57 -169.99 -5.03 13.05 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 27 C -0.23 -5.32 9.80 -38.87 -0.38 -5.70 16 28 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 29 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.09 1.25 4.54 -51.93 -0.24 1.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.38 4.73 -51.93 -0.25 1.14 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.20 1.75 8.06 -52.48 -0.42 1.32 16 39 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.12 3.12 6.26 -52.49 -0.33 2.79 16 43 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 44 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -28.72 371.90 -9.40 -38.12 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.48 Total: 7.00 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.12 Total: -21.69 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 1.23 Total: -26.89 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.60 Total: -15.20 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.72 -9.40 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815320188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.516 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds