Wall clock time and date at job start Tue Mar 31 2020 15:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.53004 * 109.47507 * 239.99776 * 2 1 3 5 5 C 1.50699 * 109.47067 * 119.99715 * 2 1 3 6 6 N 1.30428 * 125.99421 * 237.38922 * 5 2 1 7 7 N 1.39929 * 108.91832 * 180.02562 * 6 5 2 8 8 H 0.97001 * 125.74240 * 180.02562 * 7 6 5 9 9 C 1.34220 * 108.51362 * 359.72953 * 7 6 5 10 10 C 1.38121 * 107.40751 * 0.43026 * 9 7 6 11 11 C 1.47294 * 126.42424 * 179.83003 * 10 9 7 12 12 O 1.21526 * 119.99401 * 185.88642 * 11 10 9 13 13 O 1.34745 * 120.00291 * 5.89530 * 11 10 9 14 14 C 1.45199 * 117.00205 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47173 * 179.97438 * 14 13 11 16 16 C 1.38639 * 119.75239 * 269.72977 * 15 14 13 17 17 C 1.37620 * 120.24675 * 179.71896 * 16 15 14 18 18 C 1.40718 * 119.74482 * 0.57539 * 17 16 15 19 19 C 1.41393 * 120.24443 * 179.67670 * 18 17 16 20 20 H 1.08002 * 120.00378 * 209.31934 * 19 18 17 21 21 C 1.39951 * 119.99496 * 29.32072 * 19 18 17 22 22 N 1.30822 * 120.00213 * 10.51729 * 21 19 18 23 23 Si 1.86810 * 119.99711 * 190.51737 * 21 19 18 24 24 H 1.48495 * 109.47178 * 89.99662 * 23 21 19 25 25 H 1.48493 * 109.47156 * 209.99970 * 23 21 19 26 26 H 1.48504 * 109.46696 * 330.00132 * 23 21 19 27 27 C 1.40711 * 119.51029 * 359.69961 * 18 17 16 28 28 C 1.37620 * 119.74735 * 0.02562 * 27 18 17 29 29 H 1.08991 * 109.47379 * 308.02639 * 1 2 3 30 30 H 1.09001 * 109.47223 * 68.03085 * 1 2 3 31 31 H 1.09004 * 109.47058 * 188.02688 * 1 2 3 32 32 H 1.09000 * 109.47108 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46983 * 299.99867 * 3 2 1 34 34 H 1.08998 * 109.46915 * 59.99730 * 3 2 1 35 35 H 1.09003 * 109.46899 * 305.11423 * 4 2 1 36 36 H 1.08998 * 109.46873 * 65.10726 * 4 2 1 37 37 H 1.08994 * 109.47685 * 185.10994 * 4 2 1 38 38 H 1.08005 * 126.29389 * 180.29330 * 9 7 6 39 39 H 1.08998 * 109.47366 * 299.99945 * 14 13 11 40 40 H 1.09001 * 109.46841 * 60.00042 * 14 13 11 41 41 H 1.07995 * 119.87204 * 359.97438 * 16 15 14 42 42 H 1.07993 * 120.12466 * 180.27631 * 17 16 15 43 43 H 0.97001 * 119.99472 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.12538 * 179.97438 * 27 18 17 45 45 H 1.07999 * 119.87209 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.8240 -0.2071 2.1366 7 7 3.0615 -1.1744 3.1194 8 1 3.6168 -1.0583 3.9062 9 6 2.3865 -2.2878 2.7935 10 6 1.7287 -2.0391 1.6047 11 6 0.8672 -2.9800 0.8684 12 8 0.4298 -2.6759 -0.2238 13 8 0.5640 -4.1778 1.4060 14 6 -0.2904 -5.0538 0.6244 15 6 -0.5183 -6.3379 1.3796 16 6 0.3459 -7.4064 1.1965 17 6 0.1507 -8.5817 1.8853 18 6 -0.9380 -8.7006 2.7689 19 6 -1.1524 -9.9057 3.4767 20 1 -2.1539 -10.1953 3.7590 21 6 -0.0669 -10.7231 3.8115 22 7 1.1554 -10.2832 3.6570 23 14 -0.3634 -12.4424 4.4792 24 1 -0.4235 -13.4075 3.3522 25 1 0.7457 -12.8168 5.3928 26 1 -1.6483 -12.4697 5.2232 27 6 -1.8119 -7.6115 2.9424 28 6 -1.5941 -6.4438 2.2475 29 1 -0.3633 0.6330 0.8094 30 1 -0.3634 0.3845 -0.9530 31 1 -0.3633 -1.0176 0.1435 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6039 -1.7191 -1.2962 36 1 1.7534 -0.1574 -2.1368 37 1 3.1262 -0.8013 -1.2047 38 1 2.3639 -3.2095 3.3560 39 1 -1.2469 -4.5630 0.4448 40 1 0.1899 -5.2738 -0.3290 41 1 1.1778 -7.3146 0.5140 42 1 0.8277 -9.4113 1.7445 43 1 1.9077 -10.8500 3.8888 44 1 -2.6509 -7.6921 3.6178 45 1 -2.2639 -5.6068 2.3789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815320188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:04 Heat of formation + Delta-G solvation = -19.145459 kcal Electronic energy + Delta-G solvation = -27155.260481 eV Core-core repulsion = 23331.169978 eV Total energy + Delta-G solvation = -3824.090502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.65207 -40.89015 -39.42138 -38.03294 -36.91305 -35.59937 -32.68158 -32.07647 -31.61451 -31.19513 -28.85489 -28.08603 -28.01195 -25.82598 -24.30235 -23.74534 -22.91198 -21.86794 -21.52254 -19.38441 -19.22920 -19.21274 -18.18224 -17.39591 -17.25017 -16.91984 -16.09256 -15.96802 -15.78708 -15.54065 -15.44994 -15.08026 -14.69624 -14.52117 -14.15826 -13.92087 -13.82858 -13.63822 -13.50712 -12.98814 -12.96347 -12.82305 -12.69341 -12.57496 -12.49154 -12.32807 -12.09128 -12.05111 -11.92025 -11.65237 -11.49785 -11.36198 -11.19793 -11.09220 -10.95244 -10.59830 -9.95450 -9.39761 -9.24914 -8.60826 -6.39281 0.35967 0.76499 0.96958 1.13480 1.39888 1.44954 1.52810 1.68439 2.11870 2.17843 2.22228 2.79436 3.32254 3.61431 3.72204 4.05063 4.11373 4.11798 4.16996 4.19785 4.30548 4.38551 4.48446 4.52203 4.60475 4.70841 4.82626 4.84235 4.96325 5.02446 5.03885 5.05042 5.12962 5.15759 5.19868 5.33448 5.37642 5.42688 5.47669 5.52509 5.69195 5.82611 5.93967 6.09312 6.17405 6.18135 6.35919 6.45693 6.68185 6.92586 6.98375 7.00691 8.35120 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002386 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.375744 B =11732.539521 C =12289.642914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.011 3.989 3 C -0.129 4.129 4 C -0.148 4.148 5 C 0.144 3.856 6 N -0.311 5.311 7 N -0.445 5.445 8 H 0.462 0.538 9 C 0.154 3.846 10 C -0.307 4.307 11 C 0.532 3.468 12 O -0.518 6.518 13 O -0.359 6.359 14 C 0.144 3.856 15 C -0.218 4.218 16 C -0.083 4.083 17 C -0.184 4.184 18 C 0.086 3.914 19 C -0.496 4.496 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.828 5.828 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.239 4.239 28 C -0.068 4.068 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.219 0.781 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.288 0.712 44 H 0.102 0.898 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 16.545 -2.402 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 C -0.186 4.186 4 C -0.206 4.206 5 C -0.025 4.025 6 N -0.132 5.132 7 N -0.151 5.151 8 H 0.311 0.689 9 C -0.001 4.001 10 C -0.320 4.320 11 C 0.379 3.621 12 O -0.411 6.411 13 O -0.276 6.276 14 C 0.071 3.929 15 C -0.219 4.219 16 C -0.101 4.101 17 C -0.204 4.204 18 C 0.084 3.916 19 C -0.525 4.525 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.455 5.455 23 Si 0.805 3.195 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.258 4.258 28 C -0.086 4.086 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.180 17.584 -2.285 18.473 hybrid contribution -0.152 -1.710 0.577 1.811 sum 5.029 15.874 -1.708 16.738 Atomic orbital electron populations 1.22028 0.92877 1.03215 1.02134 1.19113 0.96146 0.94980 0.88845 1.21762 1.01053 0.93387 1.02431 1.22081 1.00029 1.02737 0.95760 1.22635 0.93054 0.91085 0.95677 1.77113 1.21682 1.13683 1.00723 1.46186 1.38418 1.08688 1.21794 0.68873 1.23751 0.89229 0.93052 0.94101 1.19517 1.14166 0.96299 1.02048 1.20273 0.77950 0.80196 0.83669 1.90622 1.52739 1.76332 1.21369 1.86690 1.63946 1.26723 1.50194 1.21536 0.92892 0.86223 0.92228 1.19035 1.00622 0.94471 1.07755 1.20799 0.97376 0.93441 0.98483 1.21296 1.01669 0.98020 0.99414 1.18046 0.91390 0.92688 0.89487 1.19890 0.94984 1.04720 1.32936 0.90478 1.26759 0.94005 1.03504 0.93944 1.69849 1.00135 1.38126 1.37348 0.85159 0.79202 0.76371 0.78720 1.18742 1.19315 1.18260 1.21234 1.04135 0.94404 1.06041 1.20721 0.96591 0.96634 0.94691 0.93175 0.90871 0.91626 0.92650 0.90656 0.92688 0.90637 0.90775 0.93733 0.76438 0.90769 0.91248 0.87501 0.87841 0.90174 0.88007 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.19 71.98 0.59 -2.74 16 2 C 0.01 0.26 0.75 -52.93 -0.04 0.22 16 3 C -0.13 -2.40 7.95 71.98 0.57 -1.83 16 4 C -0.15 -3.43 8.27 71.98 0.60 -2.83 16 5 C 0.14 3.62 5.64 43.53 0.25 3.87 16 6 N -0.31 -7.16 11.93 -46.65 -0.56 -7.72 16 7 N -0.45 -7.55 7.28 -56.29 -0.41 -7.96 16 8 H 0.46 4.11 8.96 -213.43 -1.91 2.20 16 9 C 0.15 3.05 11.86 84.30 1.00 4.05 16 10 C -0.31 -8.13 5.94 -20.16 -0.12 -8.25 16 11 C 0.53 16.45 7.47 70.20 0.52 16.98 16 12 O -0.52 -16.80 10.03 19.75 0.20 -16.60 16 13 O -0.36 -12.12 10.04 -56.55 -0.57 -12.68 16 14 C 0.14 4.98 5.59 71.24 0.40 5.38 16 15 C -0.22 -9.00 5.54 -19.67 -0.11 -9.11 16 16 C -0.08 -3.72 9.67 22.22 0.21 -3.50 16 17 C -0.18 -9.49 8.66 22.73 0.20 -9.29 16 18 C 0.09 4.55 5.54 -21.29 -0.12 4.43 16 19 C -0.50 -26.13 9.06 23.46 0.21 -25.91 16 20 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 21 C 0.03 1.58 5.26 85.26 0.45 2.03 16 22 N -0.83 -42.40 10.87 21.83 0.24 -42.16 16 23 Si 0.98 37.37 29.57 68.60 2.03 39.40 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 27 C -0.24 -11.36 9.80 22.73 0.22 -11.14 16 28 C -0.07 -2.88 9.67 22.22 0.21 -2.66 16 29 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 31 H 0.07 1.83 4.54 -2.38 -0.01 1.82 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 2.11 4.73 -2.39 -0.01 2.10 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.22 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 40 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 41 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.10 5.59 6.26 -2.91 -0.02 5.57 16 43 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 44 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -62.78 371.90 5.09 -57.70 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.89 Total: 30.34 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 5.05 Total: -40.30 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.73 Total: -57.84 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.37 Total: -29.29 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -62.78 5.09 -57.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815320188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.551 kcal (2) G-P(sol) polarization free energy of solvation -62.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds