Wall clock time and date at job start Tue Mar 31 2020 15:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99999 * 2 1 4 4 C 1.53001 * 109.47141 * 125.00155 * 3 2 1 5 5 C 1.52995 * 109.47330 * 300.00168 * 4 3 2 6 6 C 1.53007 * 109.47121 * 60.00109 * 4 3 2 7 7 C 1.50699 * 109.47356 * 179.97438 * 4 3 2 8 8 N 1.29944 * 126.28952 * 0.03016 * 7 4 3 9 9 O 1.21298 * 110.25438 * 179.97438 * 8 7 4 10 10 C 1.33639 * 109.80892 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.54716 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47087 * 269.97735 * 11 10 9 13 13 C 1.38304 * 119.93137 * 269.72636 * 12 11 10 14 14 C 1.38096 * 120.06865 * 179.72564 * 13 12 11 15 15 C 1.38878 * 119.92936 * 0.57296 * 14 13 12 16 16 O 1.35758 * 120.06538 * 179.68203 * 15 14 13 17 17 C 1.34829 * 116.99753 * 174.48552 * 16 15 14 18 18 H 1.08005 * 120.00078 * 5.05312 * 17 16 15 19 19 C 1.38647 * 120.00246 * 185.05972 * 17 16 15 20 20 N 1.31565 * 119.99894 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47203 * 59.99833 * 21 19 17 23 23 H 1.48506 * 109.47342 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47128 * 299.99824 * 21 19 17 25 25 C 1.38877 * 119.86249 * 359.69910 * 15 14 13 26 26 C 1.38093 * 119.93096 * 0.02562 * 25 15 14 27 27 N 1.31126 * 106.89960 * 359.76952 * 10 9 8 28 28 H 1.08004 * 119.99939 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99897 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00227 * 180.28004 * 2 1 3 31 31 H 1.08996 * 109.47163 * 245.00034 * 3 2 1 32 32 H 1.08998 * 109.47669 * 5.00268 * 3 2 1 33 33 H 1.09007 * 109.47187 * 59.99298 * 5 4 3 34 34 H 1.09001 * 109.47814 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46998 * 300.00043 * 5 4 3 36 36 H 1.08996 * 109.47289 * 60.00055 * 6 4 3 37 37 H 1.09001 * 109.46771 * 180.02562 * 6 4 3 38 38 H 1.09007 * 109.46523 * 299.99638 * 6 4 3 39 39 H 1.09001 * 109.47316 * 29.97874 * 11 10 9 40 40 H 1.09000 * 109.47247 * 149.97956 * 11 10 9 41 41 H 1.08003 * 119.96029 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03396 * 180.27458 * 14 13 12 43 43 H 0.96997 * 119.99919 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.03104 * 179.97438 * 25 15 14 45 45 H 1.07998 * 119.96486 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2522 1.1962 2.4890 6 6 4.0246 0.1729 1.0558 7 6 3.7890 2.6379 1.1813 8 7 3.6533 3.6044 0.3234 9 8 4.4027 4.5178 0.5978 10 6 5.1088 4.2117 1.6904 11 6 6.1480 5.0748 2.3584 12 6 7.5021 4.7793 1.7668 13 6 8.2999 3.7974 2.3256 14 6 9.5389 3.5204 1.7824 15 6 9.9886 4.2371 0.6811 16 8 11.2089 3.9714 0.1488 17 6 11.5366 4.6220 -0.9857 18 1 10.8760 5.3774 -1.3851 19 6 12.7215 4.3213 -1.6399 20 7 13.5264 3.4014 -1.1532 21 14 13.1751 5.2221 -3.2122 22 1 13.2768 6.6779 -2.9369 23 1 14.4810 4.7207 -3.7108 24 1 12.1286 4.9843 -4.2384 25 6 9.1876 5.2263 0.1257 26 6 7.9471 5.4947 0.6701 27 7 4.7214 3.0187 2.0726 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0046 31 1 2.6212 1.4026 -0.9313 32 1 1.3587 2.1317 0.0896 33 1 1.7071 0.2522 2.4889 34 1 2.9443 1.2165 3.3308 35 1 1.5472 2.0227 2.5786 36 1 4.5824 0.2704 0.1245 37 1 4.7165 0.1926 1.8979 38 1 3.4795 -0.7711 1.0559 39 1 5.9039 6.1254 2.2004 40 1 6.1642 4.8624 3.4273 41 1 7.9517 3.2441 3.1853 42 1 10.1596 2.7505 2.2165 43 1 14.3555 3.1913 -1.6106 44 1 9.5347 5.7856 -0.7305 45 1 7.3239 6.2641 0.2389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815705898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:28 Heat of formation + Delta-G solvation = 70.160556 kcal Electronic energy + Delta-G solvation = -26840.654056 eV Core-core repulsion = 23020.436153 eV Total energy + Delta-G solvation = -3820.217903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.45382 -39.16425 -38.46842 -36.97334 -35.38494 -33.72170 -32.61962 -32.19044 -30.45624 -30.23849 -27.56669 -27.19412 -26.51070 -25.19422 -24.53346 -22.64887 -22.04480 -20.94614 -20.35121 -19.09426 -18.08062 -17.96272 -17.27495 -16.92718 -15.78678 -15.34956 -15.05639 -14.70706 -14.60787 -14.48644 -14.34077 -13.87498 -13.74577 -13.54271 -13.29701 -13.01854 -12.78984 -12.53850 -12.40076 -12.08002 -11.91465 -11.89839 -11.68842 -11.59679 -11.40814 -11.35604 -11.24049 -11.06567 -10.88867 -10.84954 -10.77997 -10.71792 -10.49581 -9.73423 -9.59726 -9.42090 -8.90118 -8.27745 -7.31663 -6.52193 -4.11070 1.26786 1.97893 2.07057 2.14263 2.37745 3.02302 3.09611 3.11956 3.13587 3.56245 3.91199 4.01324 4.43230 4.55775 4.63119 4.76042 4.86201 4.93735 5.01533 5.13047 5.19811 5.24722 5.26406 5.38575 5.47467 5.49211 5.57871 5.60041 5.62708 5.63412 5.72523 5.78143 5.79190 5.87299 6.01242 6.06577 6.12894 6.13701 6.32824 6.34930 6.47806 6.60134 6.80292 6.95813 7.14079 7.24430 7.35359 7.71447 7.92360 8.29417 8.92949 9.61029 10.65219 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.002436 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.524291 B =11490.253900 C =12041.593046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.082 4.082 4 C 0.036 3.964 5 C -0.135 4.135 6 C -0.140 4.140 7 C 0.177 3.823 8 N -0.390 5.390 9 O 0.072 5.928 10 C 0.201 3.799 11 C 0.032 3.968 12 C -0.204 4.204 13 C -0.051 4.051 14 C -0.195 4.195 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.236 4.236 26 C -0.054 4.054 27 N -0.481 5.481 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.272 0.728 44 H 0.129 0.871 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 -2.051 5.700 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.120 4.120 4 C 0.034 3.966 5 C -0.193 4.193 6 C -0.198 4.198 7 C -0.096 4.096 8 N -0.099 5.099 9 O 0.015 5.985 10 C -0.019 4.019 11 C -0.007 4.007 12 C -0.206 4.206 13 C -0.070 4.070 14 C -0.214 4.214 15 C 0.105 3.895 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.255 4.255 26 C -0.073 4.073 27 N -0.214 5.214 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.282 -2.684 5.288 22.093 hybrid contribution 0.410 0.601 -0.923 1.175 sum -20.872 -2.083 4.365 21.425 Atomic orbital electron populations 1.23850 0.95874 1.01811 1.01618 1.22906 0.95927 0.98192 0.99371 1.20761 0.97648 0.95955 0.97643 1.18862 0.93569 0.86969 0.97177 1.21841 0.99747 1.02206 0.95488 1.21906 0.98511 0.96292 1.03124 1.25658 0.96302 0.98328 0.89283 1.74572 1.13505 0.98827 1.22986 1.85273 1.38518 1.36161 1.38576 1.29135 0.94391 0.92573 0.85811 1.18963 0.86531 0.96553 0.98657 1.18800 0.95269 1.04382 1.02115 1.20519 0.92982 0.95353 0.98110 1.20205 0.97760 1.04047 0.99378 1.19450 0.85675 0.92095 0.92242 1.83980 1.25993 1.59756 1.37778 1.21311 1.06224 1.19607 0.99824 0.88963 1.25318 0.95152 0.96742 0.99247 1.70030 1.11104 1.29209 1.39020 0.85767 0.78315 0.79243 0.80061 1.19387 1.20201 1.19434 1.21136 0.96361 1.03184 1.04827 1.20644 0.95113 0.97478 0.94050 1.71808 1.12827 1.09835 1.26972 0.88682 0.88436 0.86948 0.90296 0.90932 0.91161 0.91394 0.92734 0.92292 0.91202 0.91173 0.88119 0.87221 0.86662 0.86332 0.91827 0.85345 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 14.32 29.01 0.42 -1.00 16 2 C -0.15 -1.18 7.64 -36.03 -0.28 -1.46 16 3 C -0.08 -0.83 4.23 -27.88 -0.12 -0.94 16 4 C 0.04 0.39 0.77 -155.66 -0.12 0.28 16 5 C -0.13 -1.26 8.21 37.16 0.31 -0.96 16 6 C -0.14 -1.47 8.20 37.16 0.30 -1.16 16 7 C 0.18 2.49 6.40 -156.37 -1.00 1.49 16 8 N -0.39 -5.90 11.47 30.90 0.35 -5.54 16 9 O 0.07 1.06 11.31 18.11 0.20 1.27 16 10 C 0.20 2.80 7.75 -13.06 -0.10 2.70 16 11 C 0.03 0.38 5.97 -29.03 -0.17 0.20 16 12 C -0.20 -3.20 5.12 -104.57 -0.54 -3.73 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 14 C -0.19 -3.99 9.99 -39.40 -0.39 -4.38 16 15 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 16 O -0.17 -4.83 9.76 0.03 0.00 -4.83 16 17 C -0.39 -10.79 9.49 30.88 0.29 -10.50 16 18 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 21 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.24 -4.93 9.17 -39.40 -0.36 -5.29 16 26 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 27 N -0.48 -7.05 11.55 -9.87 -0.11 -7.16 16 28 H 0.09 0.68 7.84 -52.48 -0.41 0.27 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.11 0.81 6.81 -52.49 -0.36 0.45 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 33 H 0.07 0.55 7.22 -51.93 -0.37 0.17 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 39 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -30.97 381.86 -7.19 -38.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.24 Total: 4.11 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.88 Total: -22.84 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.00 Total: -36.78 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.21 Total: -3.56 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.97 -7.19 -38.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815705898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.313 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds