Wall clock time and date at job start Tue Mar 31 2020 15:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99999 * 2 1 4 4 C 1.53001 * 109.47141 * 125.00155 * 3 2 1 5 5 C 1.52995 * 109.47330 * 300.00168 * 4 3 2 6 6 C 1.53007 * 109.47121 * 60.00109 * 4 3 2 7 7 C 1.50699 * 109.47356 * 179.97438 * 4 3 2 8 8 N 1.29944 * 126.28952 * 0.03016 * 7 4 3 9 9 O 1.21298 * 110.25438 * 179.97438 * 8 7 4 10 10 C 1.33639 * 109.80892 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.54716 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47087 * 269.97735 * 11 10 9 13 13 C 1.38304 * 119.93137 * 269.72636 * 12 11 10 14 14 C 1.38096 * 120.06865 * 179.72564 * 13 12 11 15 15 C 1.38878 * 119.92936 * 0.57296 * 14 13 12 16 16 O 1.35758 * 120.06538 * 179.68203 * 15 14 13 17 17 C 1.34829 * 116.99753 * 174.48552 * 16 15 14 18 18 H 1.08005 * 120.00078 * 5.05312 * 17 16 15 19 19 C 1.38647 * 120.00246 * 185.05972 * 17 16 15 20 20 N 1.31565 * 119.99894 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47203 * 59.99833 * 21 19 17 23 23 H 1.48506 * 109.47342 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47128 * 299.99824 * 21 19 17 25 25 C 1.38877 * 119.86249 * 359.69910 * 15 14 13 26 26 C 1.38093 * 119.93096 * 0.02562 * 25 15 14 27 27 N 1.31126 * 106.89960 * 359.76952 * 10 9 8 28 28 H 1.08004 * 119.99939 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99897 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00227 * 180.28004 * 2 1 3 31 31 H 1.08996 * 109.47163 * 245.00034 * 3 2 1 32 32 H 1.08998 * 109.47669 * 5.00268 * 3 2 1 33 33 H 1.09007 * 109.47187 * 59.99298 * 5 4 3 34 34 H 1.09001 * 109.47814 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46998 * 300.00043 * 5 4 3 36 36 H 1.08996 * 109.47289 * 60.00055 * 6 4 3 37 37 H 1.09001 * 109.46771 * 180.02562 * 6 4 3 38 38 H 1.09007 * 109.46523 * 299.99638 * 6 4 3 39 39 H 1.09001 * 109.47316 * 29.97874 * 11 10 9 40 40 H 1.09000 * 109.47247 * 149.97956 * 11 10 9 41 41 H 1.08003 * 119.96029 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03396 * 180.27458 * 14 13 12 43 43 H 0.96997 * 119.99919 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.03104 * 179.97438 * 25 15 14 45 45 H 1.07998 * 119.96486 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2522 1.1962 2.4890 6 6 4.0246 0.1729 1.0558 7 6 3.7890 2.6379 1.1813 8 7 3.6533 3.6044 0.3234 9 8 4.4027 4.5178 0.5978 10 6 5.1088 4.2117 1.6904 11 6 6.1480 5.0748 2.3584 12 6 7.5021 4.7793 1.7668 13 6 8.2999 3.7974 2.3256 14 6 9.5389 3.5204 1.7824 15 6 9.9886 4.2371 0.6811 16 8 11.2089 3.9714 0.1488 17 6 11.5366 4.6220 -0.9857 18 1 10.8760 5.3774 -1.3851 19 6 12.7215 4.3213 -1.6399 20 7 13.5264 3.4014 -1.1532 21 14 13.1751 5.2221 -3.2122 22 1 13.2768 6.6779 -2.9369 23 1 14.4810 4.7207 -3.7108 24 1 12.1286 4.9843 -4.2384 25 6 9.1876 5.2263 0.1257 26 6 7.9471 5.4947 0.6701 27 7 4.7214 3.0187 2.0726 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0046 31 1 2.6212 1.4026 -0.9313 32 1 1.3587 2.1317 0.0896 33 1 1.7071 0.2522 2.4889 34 1 2.9443 1.2165 3.3308 35 1 1.5472 2.0227 2.5786 36 1 4.5824 0.2704 0.1245 37 1 4.7165 0.1926 1.8979 38 1 3.4795 -0.7711 1.0559 39 1 5.9039 6.1254 2.2004 40 1 6.1642 4.8624 3.4273 41 1 7.9517 3.2441 3.1853 42 1 10.1596 2.7505 2.2165 43 1 14.3555 3.1913 -1.6106 44 1 9.5347 5.7856 -0.7305 45 1 7.3239 6.2641 0.2389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815705898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:27 Heat of formation + Delta-G solvation = 51.885361 kcal Electronic energy + Delta-G solvation = -26841.446527 eV Core-core repulsion = 23020.436153 eV Total energy + Delta-G solvation = -3821.010375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.56195 -40.82683 -39.30963 -38.60166 -36.44592 -34.86958 -34.19967 -33.31492 -31.85686 -31.69523 -28.37615 -28.31106 -27.68129 -26.94235 -25.56031 -23.78259 -23.63086 -22.28523 -21.28203 -19.94067 -19.81938 -19.13432 -18.83154 -18.23668 -16.69276 -16.45713 -16.41295 -16.13831 -16.03072 -15.72026 -15.49684 -15.20953 -15.05709 -14.67539 -14.52513 -14.29014 -13.98276 -13.85241 -13.56196 -13.18570 -12.98148 -12.85516 -12.81067 -12.77874 -12.68612 -12.48600 -12.43300 -12.32003 -12.27043 -12.15995 -11.92195 -11.77504 -11.73453 -11.19866 -10.86335 -10.80176 -10.22205 -9.80794 -9.00021 -8.49160 -6.17557 0.15118 0.58391 0.59912 1.27045 1.34232 1.38264 1.44496 1.50311 1.95390 2.16347 2.58609 2.81940 3.02814 3.16982 3.48990 3.70458 3.81007 3.92262 3.93492 4.04921 4.15935 4.18124 4.24836 4.31697 4.45191 4.56898 4.61671 4.66402 4.72718 4.73742 4.76659 4.81866 4.84965 4.90537 4.97978 5.04659 5.07437 5.12430 5.14480 5.25626 5.26826 5.27541 5.53373 5.69107 5.71738 5.74434 5.87980 6.00611 6.17544 6.95364 7.20680 7.75081 8.73574 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.002436 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.524291 B =11490.253900 C =12041.593046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.076 4.076 4 C 0.032 3.968 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.173 3.827 8 N -0.408 5.408 9 O 0.064 5.936 10 C 0.199 3.801 11 C 0.035 3.965 12 C -0.173 4.173 13 C -0.045 4.045 14 C -0.209 4.209 15 C 0.119 3.881 16 O -0.230 6.230 17 C -0.415 4.415 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.255 1.255 23 H -0.272 1.272 24 H -0.259 1.259 25 C -0.246 4.246 26 C -0.052 4.052 27 N -0.494 5.494 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.645 -1.276 6.462 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C -0.113 4.113 4 C 0.030 3.970 5 C -0.185 4.185 6 C -0.195 4.195 7 C -0.100 4.100 8 N -0.118 5.118 9 O 0.009 5.991 10 C -0.021 4.021 11 C -0.003 4.003 12 C -0.175 4.175 13 C -0.063 4.063 14 C -0.228 4.228 15 C 0.068 3.932 16 O -0.136 6.136 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.179 1.179 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.266 4.266 26 C -0.070 4.070 27 N -0.227 5.227 28 H 0.113 0.887 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.833 -1.884 6.084 25.637 hybrid contribution 1.100 0.361 -0.930 1.485 sum -23.733 -1.523 5.155 24.334 Atomic orbital electron populations 1.24026 0.95627 1.02652 0.99834 1.22857 0.96199 0.97511 1.00927 1.20662 0.97234 0.97013 0.96432 1.19077 0.93737 0.85709 0.98433 1.21792 0.99412 1.03164 0.94163 1.21892 0.98405 0.97449 1.01730 1.26260 0.96069 0.99047 0.88660 1.74578 1.14256 0.99337 1.23673 1.85248 1.38736 1.36234 1.38874 1.29445 0.94619 0.92548 0.85527 1.19196 0.83010 0.98457 0.99631 1.19276 0.96554 1.01551 1.00072 1.20926 0.91384 0.95416 0.98606 1.20455 0.99311 1.04013 0.99012 1.20021 0.85584 0.93950 0.93642 1.83947 1.28652 1.61989 1.39054 1.21796 1.06887 1.20071 1.00306 0.87965 1.26599 0.94807 0.97672 1.02957 1.70179 1.12083 1.32076 1.41388 0.84661 0.78145 0.78305 0.75215 1.17889 1.19638 1.18374 1.21268 0.97698 1.02676 1.04919 1.21074 0.93794 0.98129 0.93990 1.71825 1.13177 1.10244 1.27435 0.88724 0.86731 0.85847 0.92064 0.91618 0.89234 0.91927 0.92949 0.93954 0.92152 0.88582 0.84311 0.84322 0.83349 0.86966 0.91794 0.86185 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 67.78 0.97 -1.24 16 2 C -0.16 -2.20 7.64 25.65 0.20 -2.00 16 3 C -0.08 -1.43 4.23 29.85 0.13 -1.30 16 4 C 0.03 0.66 0.77 -52.93 -0.04 0.62 16 5 C -0.13 -2.10 8.21 71.98 0.59 -1.51 16 6 C -0.14 -2.67 8.20 71.98 0.59 -2.08 16 7 C 0.17 4.57 6.40 138.46 0.89 5.46 16 8 N -0.41 -11.74 11.47 -60.33 -0.69 -12.43 16 9 O 0.06 1.75 11.31 74.87 0.85 2.60 16 10 C 0.20 4.86 7.75 88.38 0.68 5.55 16 11 C 0.04 0.65 5.97 29.10 0.17 0.83 16 12 C -0.17 -4.80 5.12 -19.83 -0.10 -4.90 16 13 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 14 C -0.21 -8.70 9.99 22.39 0.22 -8.47 16 15 C 0.12 5.82 6.65 22.58 0.15 5.97 16 16 O -0.23 -13.79 9.76 -22.81 -0.22 -14.01 16 17 C -0.41 -24.02 9.49 67.92 0.64 -23.38 16 18 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.40 13.67 21.61 0.30 -56.10 16 21 Si 1.02 42.69 29.55 68.60 2.03 44.72 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 25 C -0.25 -10.36 9.17 22.39 0.21 -10.15 16 26 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 27 N -0.49 -13.20 11.55 -303.21 -3.50 -16.70 16 28 H 0.09 1.14 7.84 -2.91 -0.02 1.12 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.12 1.45 6.81 -2.91 -0.02 1.43 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 33 H 0.09 1.12 7.22 -2.38 -0.02 1.11 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.33 6.53 -2.38 -0.02 1.32 16 39 H 0.14 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 45 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -73.73 381.86 5.94 -67.79 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 1.00 Total: 24.21 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 6.20 Total: -40.07 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.90 Total: -85.23 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.62 Total: -11.41 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.73 5.94 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815705898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.674 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds