Wall clock time and date at job start Tue Mar 31 2020 16:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30701 * 1 3 3 C 1.30701 * 179.97438 * 2 1 4 4 C 1.50692 * 120.00478 * 314.30905 * 3 2 1 5 5 N 1.46496 * 109.47218 * 125.00095 * 4 3 2 6 6 C 1.34777 * 120.00018 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00134 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47569 * 59.99791 * 18 16 14 20 20 H 1.48501 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46961 * 299.99706 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.07994 * 120.00115 * 315.68902 * 1 2 3 29 29 H 1.08001 * 119.99554 * 135.69220 * 1 2 3 30 30 H 1.08006 * 119.99335 * 134.31323 * 3 2 1 31 31 H 1.08998 * 109.47044 * 5.00262 * 4 3 2 32 32 H 1.09005 * 109.47374 * 245.00561 * 4 3 2 33 33 H 0.97003 * 120.00423 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46647 * 60.00234 * 8 6 5 35 35 H 1.09001 * 109.46925 * 300.01087 * 8 6 5 36 36 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 37 37 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 38 38 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 39 39 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 40 40 H 0.97008 * 120.00038 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 42 42 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 43 43 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6140 0.0006 0.0000 4 6 3.3680 -0.9106 0.9338 5 7 4.2986 -1.7385 0.1626 6 6 5.0844 -2.6343 0.7924 7 8 5.0207 -2.7555 1.9974 8 6 6.0413 -3.4864 -0.0010 9 6 6.8069 -4.4114 0.9471 10 6 7.7643 -5.2630 0.1538 11 8 7.7576 -5.2148 -1.0581 12 7 8.6279 -6.0782 0.7910 13 6 9.6239 -6.8324 0.0257 14 6 9.0476 -8.1675 -0.3701 15 1 8.0402 -8.4279 -0.0810 16 6 9.8063 -9.0559 -1.1023 17 7 11.0324 -8.7381 -1.4557 18 14 9.0918 -10.7105 -1.5936 19 1 7.8818 -10.4992 -2.4281 20 1 10.1013 -11.4750 -2.3692 21 1 8.7245 -11.4730 -0.3733 22 6 8.5733 -6.2043 2.1835 23 6 7.4717 -6.7978 2.7858 24 6 7.4212 -6.9212 4.1604 25 6 8.4662 -6.4550 4.9369 26 6 9.5643 -5.8632 4.3403 27 6 9.6209 -5.7367 2.9661 28 1 -0.5400 0.6692 0.6533 29 1 -0.5399 -0.6693 -0.6534 30 1 3.1537 0.6543 -0.6693 31 1 2.6634 -1.5525 1.4627 32 1 3.9255 -0.3120 1.6543 33 1 4.3499 -1.6414 -0.8012 34 1 6.7456 -2.8448 -0.5306 35 1 5.4834 -4.0853 -0.7208 36 1 6.1024 -5.0530 1.4764 37 1 7.3647 -3.8127 1.6671 38 1 9.8935 -6.2730 -0.8701 39 1 10.5119 -6.9873 0.6384 40 1 11.5663 -9.3634 -1.9705 41 1 6.6535 -7.1585 2.1802 42 1 6.5646 -7.3824 4.6295 43 1 8.4245 -6.5531 6.0117 44 1 10.3787 -5.4998 4.9494 45 1 10.4787 -5.2740 2.5007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816699792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:36 Heat of formation + Delta-G solvation = 0.546825 kcal Electronic energy + Delta-G solvation = -26698.684319 eV Core-core repulsion = 22875.447738 eV Total energy + Delta-G solvation = -3823.236581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.12764 -39.53361 -38.04987 -36.10040 -34.86750 -33.68286 -32.89945 -32.38838 -30.61584 -29.76359 -29.31089 -27.50245 -25.70647 -23.99043 -22.71630 -22.27376 -21.85376 -20.50797 -18.90521 -18.36496 -17.42075 -16.65722 -16.38316 -16.20234 -15.99670 -15.77955 -15.35437 -15.17157 -14.73267 -14.57232 -14.26142 -14.21456 -13.92579 -13.63703 -13.33013 -13.09143 -12.97511 -12.68554 -12.49684 -12.23451 -12.09055 -11.82436 -11.43316 -11.17921 -11.08802 -10.86843 -10.80220 -10.61177 -10.17909 -10.09345 -9.79274 -9.73812 -9.54735 -9.28882 -9.17680 -8.60875 -8.53209 -8.42999 -7.63232 -6.05254 -4.09395 1.42659 1.58831 1.64424 1.72911 2.59730 3.12744 3.28812 3.32967 3.36271 3.40539 3.84562 4.11816 4.41942 4.44787 4.65611 4.82814 5.01748 5.09399 5.19293 5.22428 5.24634 5.29239 5.29961 5.35725 5.43381 5.50522 5.59653 5.73009 5.76965 5.82414 5.89130 6.00579 6.09165 6.13415 6.23234 6.33330 6.67422 6.77931 6.80554 6.85885 7.00893 7.24716 7.32297 7.35854 7.49892 7.90029 8.11948 8.19376 8.35394 8.84468 8.99022 9.54803 11.03078 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.002822 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.779200 B = 9918.546170 C =11436.660348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.177 4.177 3 C -0.130 4.130 4 C 0.162 3.838 5 N -0.733 5.733 6 C 0.516 3.484 7 O -0.539 6.539 8 C -0.124 4.124 9 C -0.124 4.124 10 C 0.513 3.487 11 O -0.531 6.531 12 N -0.561 5.561 13 C 0.248 3.752 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.164 3.836 23 C -0.122 4.122 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.110 4.110 27 C -0.125 4.125 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.936 15.526 7.711 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.178 4.178 3 C -0.148 4.148 4 C 0.039 3.961 5 N -0.386 5.386 6 C 0.303 3.697 7 O -0.415 6.415 8 C -0.164 4.164 9 C -0.165 4.165 10 C 0.301 3.699 11 O -0.407 6.407 12 N -0.289 5.289 13 C 0.131 3.869 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.072 3.928 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.145 4.145 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.784 15.379 7.785 22.071 hybrid contribution -0.307 -0.964 -0.789 1.283 sum -14.091 14.416 6.996 21.338 Atomic orbital electron populations 1.22196 0.90802 1.01927 1.02088 1.23552 0.94713 0.99705 0.99854 1.21053 0.90390 1.01533 1.01819 1.20121 0.91370 0.91958 0.92637 1.46039 1.41169 1.40081 1.11360 1.20893 0.80634 0.79752 0.88429 1.90710 1.68206 1.67935 1.14658 1.21389 0.97991 0.98241 0.98774 1.21429 0.98466 0.98232 0.98357 1.20391 0.81097 0.80303 0.88149 1.90676 1.68973 1.67263 1.13822 1.45963 1.35573 1.43413 1.03917 1.19423 0.85561 0.90612 0.91340 1.21320 1.00270 1.00165 1.34489 0.92461 1.24907 0.94837 0.98672 0.95602 1.69914 1.08678 1.36474 1.38346 0.86547 0.78833 0.83358 0.78646 1.20145 1.21151 1.20213 1.17707 0.94683 0.96560 0.83831 1.21329 0.98983 0.98849 0.94988 1.20957 0.98655 0.99820 0.93265 1.21045 0.94438 1.00301 0.99479 1.20947 0.98112 0.99622 0.94162 1.21281 0.99064 1.00508 0.93662 0.85638 0.85500 0.84430 0.91060 0.90211 0.76182 0.88092 0.87830 0.88476 0.88817 0.93540 0.94698 0.92636 0.86040 0.86185 0.86443 0.86159 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 14.70 29.10 0.43 -0.35 16 2 C -0.18 -1.35 13.46 -42.85 -0.58 -1.93 16 3 C -0.13 -0.94 9.62 -35.95 -0.35 -1.29 16 4 C 0.16 1.45 6.11 -5.20 -0.03 1.42 16 5 N -0.73 -6.96 5.55 -61.48 -0.34 -7.30 16 6 C 0.52 6.59 7.83 -10.98 -0.09 6.50 16 7 O -0.54 -8.72 15.98 5.56 0.09 -8.63 16 8 C -0.12 -1.63 5.01 -27.88 -0.14 -1.77 16 9 C -0.12 -1.99 3.65 -27.88 -0.10 -2.09 16 10 C 0.51 10.57 7.53 -10.98 -0.08 10.49 16 11 O -0.53 -12.67 15.61 5.55 0.09 -12.58 16 12 N -0.56 -12.23 2.51 -114.73 -0.29 -12.52 16 13 C 0.25 6.53 5.07 -5.19 -0.03 6.50 16 14 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.90 -26.62 13.28 55.43 0.74 -25.88 16 18 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.16 3.09 4.42 -83.69 -0.37 2.72 16 23 C -0.12 -2.08 8.46 -39.39 -0.33 -2.41 16 24 C -0.11 -1.56 10.04 -39.61 -0.40 -1.95 16 25 C -0.13 -1.79 10.04 -39.55 -0.40 -2.19 16 26 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 27 C -0.13 -2.10 9.64 -39.39 -0.38 -2.48 16 28 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 30 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 2.84 8.46 -40.82 -0.35 2.49 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.34 8.04 -51.93 -0.42 0.92 16 36 H 0.10 1.54 6.95 -51.93 -0.36 1.18 16 37 H 0.09 1.46 7.97 -51.93 -0.41 1.05 16 38 H 0.05 1.34 7.49 -51.93 -0.39 0.96 16 39 H 0.04 0.94 7.83 -51.93 -0.41 0.53 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.12 2.07 7.90 -52.49 -0.41 1.65 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -34.97 395.65 -8.95 -43.92 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.51 Total: 4.36 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.66 Total: -4.38 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.11 Total: -45.70 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.97 -8.95 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816699792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.464 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds