Wall clock time and date at job start Tue Mar 31 2020 16:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30701 * 1 3 3 C 1.30701 * 179.97438 * 2 1 4 4 C 1.50692 * 120.00478 * 314.30905 * 3 2 1 5 5 N 1.46496 * 109.47218 * 125.00095 * 4 3 2 6 6 C 1.34777 * 120.00018 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00134 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47569 * 59.99791 * 18 16 14 20 20 H 1.48501 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46961 * 299.99706 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.07994 * 120.00115 * 315.68902 * 1 2 3 29 29 H 1.08001 * 119.99554 * 135.69220 * 1 2 3 30 30 H 1.08006 * 119.99335 * 134.31323 * 3 2 1 31 31 H 1.08998 * 109.47044 * 5.00262 * 4 3 2 32 32 H 1.09005 * 109.47374 * 245.00561 * 4 3 2 33 33 H 0.97003 * 120.00423 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46647 * 60.00234 * 8 6 5 35 35 H 1.09001 * 109.46925 * 300.01087 * 8 6 5 36 36 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 37 37 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 38 38 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 39 39 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 40 40 H 0.97008 * 120.00038 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 42 42 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 43 43 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6140 0.0006 0.0000 4 6 3.3680 -0.9106 0.9338 5 7 4.2986 -1.7385 0.1626 6 6 5.0844 -2.6343 0.7924 7 8 5.0207 -2.7555 1.9974 8 6 6.0413 -3.4864 -0.0010 9 6 6.8069 -4.4114 0.9471 10 6 7.7643 -5.2630 0.1538 11 8 7.7576 -5.2148 -1.0581 12 7 8.6279 -6.0782 0.7910 13 6 9.6239 -6.8324 0.0257 14 6 9.0476 -8.1675 -0.3701 15 1 8.0402 -8.4279 -0.0810 16 6 9.8063 -9.0559 -1.1023 17 7 11.0324 -8.7381 -1.4557 18 14 9.0918 -10.7105 -1.5936 19 1 7.8818 -10.4992 -2.4281 20 1 10.1013 -11.4750 -2.3692 21 1 8.7245 -11.4730 -0.3733 22 6 8.5733 -6.2043 2.1835 23 6 7.4717 -6.7978 2.7858 24 6 7.4212 -6.9212 4.1604 25 6 8.4662 -6.4550 4.9369 26 6 9.5643 -5.8632 4.3403 27 6 9.6209 -5.7367 2.9661 28 1 -0.5400 0.6692 0.6533 29 1 -0.5399 -0.6693 -0.6534 30 1 3.1537 0.6543 -0.6693 31 1 2.6634 -1.5525 1.4627 32 1 3.9255 -0.3120 1.6543 33 1 4.3499 -1.6414 -0.8012 34 1 6.7456 -2.8448 -0.5306 35 1 5.4834 -4.0853 -0.7208 36 1 6.1024 -5.0530 1.4764 37 1 7.3647 -3.8127 1.6671 38 1 9.8935 -6.2730 -0.8701 39 1 10.5119 -6.9873 0.6384 40 1 11.5663 -9.3634 -1.9705 41 1 6.6535 -7.1585 2.1802 42 1 6.5646 -7.3824 4.6295 43 1 8.4245 -6.5531 6.0117 44 1 10.3787 -5.4998 4.9494 45 1 10.4787 -5.2740 2.5007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816699792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:35 Heat of formation + Delta-G solvation = -20.845064 kcal Electronic energy + Delta-G solvation = -26699.611941 eV Core-core repulsion = 22875.447738 eV Total energy + Delta-G solvation = -3824.164203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53868 -40.68035 -39.45862 -36.87222 -36.54359 -34.83109 -34.41806 -33.81269 -31.82030 -30.89451 -30.42092 -29.21949 -27.01107 -25.18094 -24.29316 -23.51127 -23.24310 -21.51273 -20.37983 -19.14123 -18.73296 -18.50739 -17.64193 -17.39457 -17.13929 -16.97015 -16.94341 -16.38115 -16.10871 -15.72196 -15.45940 -15.14504 -15.00880 -14.76807 -14.49831 -14.27752 -14.19290 -14.05396 -13.84707 -13.58228 -13.43367 -13.32167 -13.08384 -12.96365 -12.65379 -12.41721 -12.26377 -12.12236 -12.09136 -11.74626 -11.11337 -10.94757 -10.66722 -10.34543 -10.26815 -10.10658 -9.89431 -9.81002 -9.21443 -8.24679 -6.39139 0.38303 0.52179 0.87327 1.09075 1.34678 1.38731 1.46024 1.56715 1.67077 2.04843 2.35201 2.47360 2.89445 3.04983 3.48874 3.84038 3.88731 4.01940 4.05614 4.10556 4.13296 4.21931 4.32254 4.48103 4.56531 4.61245 4.64736 4.67530 4.76368 4.81577 4.92010 4.99340 5.00963 5.10531 5.16515 5.18159 5.23873 5.39598 5.41975 5.54705 5.63574 5.66805 5.77815 6.00852 6.08860 6.26329 6.48117 6.64222 6.71516 7.16765 7.21546 7.35596 8.82339 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.002822 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.779200 B = 9918.546170 C =11436.660348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.211 4.211 3 C -0.130 4.130 4 C 0.164 3.836 5 N -0.717 5.717 6 C 0.522 3.478 7 O -0.575 6.575 8 C -0.119 4.119 9 C -0.106 4.106 10 C 0.507 3.493 11 O -0.573 6.573 12 N -0.564 5.564 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.967 3.033 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.265 1.265 22 C 0.127 3.873 23 C -0.136 4.136 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.141 4.141 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.008 0.992 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 15.537 9.557 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.212 4.212 3 C -0.148 4.148 4 C 0.041 3.959 5 N -0.369 5.369 6 C 0.309 3.691 7 O -0.454 6.454 8 C -0.159 4.159 9 C -0.146 4.146 10 C 0.297 3.703 11 O -0.453 6.453 12 N -0.291 5.291 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.189 1.189 22 C 0.036 3.964 23 C -0.156 4.156 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.161 4.161 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.171 0.829 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.585 15.423 9.643 23.953 hybrid contribution 0.196 -0.913 -1.276 1.582 sum -15.389 14.509 8.366 22.745 Atomic orbital electron populations 1.22621 0.90431 1.01238 1.01336 1.23944 0.95450 1.00822 1.00942 1.20993 0.90435 1.01521 1.01848 1.20127 0.90962 0.91802 0.93016 1.45914 1.40036 1.38843 1.12150 1.20665 0.80696 0.79989 0.87739 1.90693 1.69472 1.69254 1.16011 1.21330 0.98192 0.98098 0.98258 1.21279 0.97382 0.97789 0.98138 1.21210 0.81090 0.79998 0.87999 1.90636 1.70342 1.68565 1.15723 1.45816 1.34775 1.43093 1.05433 1.18850 0.86368 0.90011 0.90177 1.21558 1.00064 1.01302 1.35005 0.93183 1.25824 0.95179 1.02615 0.95336 1.70031 1.09868 1.37900 1.38765 0.85481 0.78133 0.78635 0.78674 1.19961 1.20025 1.18928 1.17970 0.96701 0.99489 0.82211 1.21376 0.98298 0.99440 0.96472 1.21337 1.00024 0.99057 0.91975 1.21546 0.93062 0.97903 1.01454 1.21339 0.99362 0.98608 0.92956 1.21394 0.98383 1.01156 0.95142 0.83918 0.84168 0.82935 0.92342 0.90429 0.74588 0.87150 0.87524 0.88193 0.88326 0.97373 0.96163 0.92285 0.86967 0.83172 0.82371 0.82903 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 14.70 68.09 1.00 -0.16 16 2 C -0.21 -2.92 13.46 22.80 0.31 -2.62 16 3 C -0.13 -1.74 9.62 25.95 0.25 -1.49 16 4 C 0.16 2.82 6.11 85.63 0.52 3.34 16 5 N -0.72 -13.02 5.55 -466.80 -2.59 -15.61 16 6 C 0.52 13.15 7.83 87.66 0.69 13.83 16 7 O -0.57 -18.49 15.98 -3.03 -0.05 -18.54 16 8 C -0.12 -3.15 5.01 29.85 0.15 -3.00 16 9 C -0.11 -3.46 3.65 29.85 0.11 -3.36 16 10 C 0.51 22.02 7.53 87.66 0.66 22.68 16 11 O -0.57 -28.91 15.61 -3.04 -0.05 -28.96 16 12 N -0.56 -25.99 2.51 -635.28 -1.59 -27.59 16 13 C 0.27 14.88 5.07 85.63 0.43 15.31 16 14 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 16 C 0.01 0.57 5.46 84.66 0.46 1.03 16 17 N -0.93 -56.62 13.28 21.45 0.28 -56.33 16 18 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.13 4.92 4.42 38.15 0.17 5.08 16 23 C -0.14 -4.64 8.46 22.39 0.19 -4.45 16 24 C -0.11 -2.77 10.04 22.25 0.22 -2.54 16 25 C -0.12 -2.80 10.04 22.29 0.22 -2.57 16 26 C -0.10 -2.68 10.04 22.25 0.22 -2.45 16 27 C -0.14 -4.76 9.64 22.39 0.22 -4.54 16 28 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 29 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.06 1.17 7.94 -2.39 -0.02 1.15 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.42 5.37 8.46 -92.71 -0.78 4.59 16 34 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.11 2.78 8.04 -2.39 -0.02 2.77 16 36 H 0.10 3.24 6.95 -2.39 -0.02 3.22 16 37 H 0.10 3.14 7.97 -2.39 -0.02 3.13 16 38 H 0.01 0.51 7.49 -2.39 -0.02 0.49 16 39 H 0.02 1.17 7.83 -2.39 -0.02 1.15 16 40 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 41 H 0.11 3.92 7.90 -2.91 -0.02 3.89 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -79.17 395.65 4.30 -74.86 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.21 Total: 22.19 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.07 Total: 2.20 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -3.90 Total: -99.53 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.10 Total: -47.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.17 4.30 -74.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816699792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.018 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds