Wall clock time and date at job start Tue Mar 31 2020 15:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 C 1.50697 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.34660 * 125.79859 * 264.96802 * 4 3 2 6 6 H 0.96994 * 124.85577 * 0.02562 * 5 4 3 7 7 C 1.36447 * 110.29666 * 180.02562 * 5 4 3 8 8 C 1.34486 * 108.85730 * 0.23334 * 7 5 4 9 9 C 1.36772 * 125.80418 * 85.00264 * 4 3 2 10 10 C 1.47259 * 126.94018 * 359.97008 * 9 4 3 11 11 O 1.21632 * 120.00462 * 0.02562 * 10 9 4 12 12 N 1.34777 * 120.00244 * 180.02562 * 10 9 4 13 13 C 1.46496 * 120.00366 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47164 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93355 * 269.72672 * 14 13 12 16 16 C 1.38097 * 120.06688 * 179.72227 * 15 14 13 17 17 C 1.38874 * 119.93544 * 0.57402 * 16 15 14 18 18 O 1.35743 * 120.07665 * 179.67857 * 17 16 15 19 19 C 1.34825 * 117.00502 * 174.48889 * 18 17 16 20 20 H 1.08001 * 120.00340 * 5.05614 * 19 18 17 21 21 C 1.38653 * 120.00277 * 185.05687 * 19 18 17 22 22 N 1.31558 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00237 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47051 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47259 * 120.00256 * 23 21 19 26 26 H 1.48500 * 109.47181 * 240.00207 * 23 21 19 27 27 C 1.38886 * 119.86005 * 359.70308 * 17 16 15 28 28 C 1.38109 * 119.92572 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47342 * 60.00201 * 1 2 3 30 30 H 1.08998 * 109.47589 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47314 * 300.00544 * 1 2 3 32 32 H 1.09003 * 109.46826 * 239.99599 * 2 1 3 33 33 H 1.08995 * 109.47041 * 119.99999 * 2 1 3 34 34 H 1.08996 * 109.46958 * 59.99699 * 3 2 1 35 35 H 1.09003 * 109.46783 * 300.00141 * 3 2 1 36 36 H 1.07999 * 125.57559 * 179.97438 * 7 5 4 37 37 H 1.08005 * 126.83901 * 179.75578 * 8 7 5 38 38 H 0.97003 * 119.99422 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47490 * 300.00333 * 13 12 10 40 40 H 1.09002 * 109.46729 * 60.00271 * 13 12 10 41 41 H 1.07995 * 119.96417 * 359.97438 * 15 14 13 42 42 H 1.08008 * 120.03278 * 180.27458 * 16 15 14 43 43 H 0.97010 * 120.00191 * 179.97438 * 22 21 19 44 44 H 1.07990 * 120.03713 * 179.97438 * 27 17 16 45 45 H 1.08004 * 119.96045 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3351 1.5380 1.0870 6 1 4.0142 1.6178 1.9989 7 6 5.6498 1.5066 0.7232 8 6 5.7279 1.3946 -0.6148 9 6 4.3466 1.3459 -1.1060 10 6 3.9092 1.2230 -2.5068 11 8 2.7228 1.1996 -2.7737 12 7 4.8235 1.1365 -3.4932 13 6 4.3884 1.0137 -4.8866 14 6 5.5959 0.9356 -5.7850 15 6 6.1446 2.0933 -6.3058 16 6 7.2545 2.0254 -7.1247 17 6 7.8126 0.7921 -7.4346 18 8 8.8997 0.7216 -8.2445 19 6 9.4599 -0.4931 -8.4129 20 1 8.9950 -1.3669 -7.9806 21 6 10.6328 -0.6208 -9.1411 22 7 11.1995 0.4435 -9.6673 23 14 11.4093 -2.3037 -9.3739 24 1 10.5830 -3.3293 -8.6878 25 1 11.4845 -2.6181 -10.8234 26 1 12.7773 -2.3020 -8.7962 27 6 7.2559 -0.3691 -6.9146 28 6 6.1499 -0.2941 -6.0909 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4903 1.5665 1.3987 37 1 6.6285 1.3479 -1.2092 38 1 5.7698 1.1548 -3.2803 39 1 3.7901 0.1100 -5.0022 40 1 3.7896 1.8831 -5.1582 41 1 5.7070 3.0517 -6.0687 42 1 7.6852 2.9303 -7.5276 43 1 12.0204 0.3543 -10.1765 44 1 7.6874 -1.3297 -7.1541 45 1 5.7162 -1.1968 -5.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817526756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:46 Heat of formation + Delta-G solvation = -13.316797 kcal Electronic energy + Delta-G solvation = -26280.472791 eV Core-core repulsion = 22456.635039 eV Total energy + Delta-G solvation = -3823.837753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43729 -39.31348 -38.68511 -36.77555 -35.21551 -34.14348 -32.34906 -31.38712 -30.23417 -30.13345 -29.61503 -26.46895 -25.75396 -24.73832 -22.44919 -22.00824 -21.68993 -20.89975 -20.45920 -19.42691 -18.03835 -17.88844 -17.05061 -16.11722 -15.64694 -15.22934 -15.16793 -14.74019 -14.58620 -14.27098 -14.16538 -14.09916 -13.68298 -13.57205 -13.42952 -13.24981 -13.01085 -12.82189 -12.74110 -12.63681 -12.02246 -11.99799 -11.64326 -11.51999 -11.42092 -11.35538 -10.94198 -10.83788 -10.72997 -10.63624 -10.45700 -9.71659 -9.38615 -9.05525 -8.88560 -8.75668 -8.32212 -8.23706 -7.28261 -6.50406 -4.09111 1.68609 2.13112 2.17471 2.28152 2.93705 3.09363 3.11253 3.16844 3.65470 3.71847 3.92677 4.49308 4.56092 4.73203 4.82996 4.88678 5.04814 5.09208 5.12964 5.21732 5.24360 5.34452 5.41876 5.49847 5.55285 5.64599 5.70968 5.72230 5.81099 5.87157 5.92983 6.03406 6.12696 6.13630 6.16841 6.39804 6.59099 6.64236 6.70956 6.78720 6.85192 7.00131 7.18850 7.22819 7.32575 7.38940 7.75491 7.86170 7.94675 8.52665 8.95224 9.64173 10.67306 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002106 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.849784 B =13293.679168 C =13620.458483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.057 4.057 4 C 0.104 3.896 5 N -0.554 5.554 6 H 0.414 0.586 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.230 4.230 10 C 0.585 3.415 11 O -0.557 6.557 12 N -0.718 5.718 13 C 0.181 3.819 14 C -0.212 4.212 15 C -0.055 4.055 16 C -0.195 4.195 17 C 0.160 3.840 18 O -0.175 6.175 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.237 4.237 28 C -0.051 4.051 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.401 0.599 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.270 0.730 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 0.952 21.567 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.013 4.013 5 N -0.149 5.149 6 H 0.250 0.750 7 C -0.147 4.147 8 C -0.191 4.191 9 C -0.240 4.240 10 C 0.374 3.626 11 O -0.437 6.437 12 N -0.368 5.368 13 C 0.059 3.941 14 C -0.213 4.213 15 C -0.073 4.073 16 C -0.215 4.215 17 C 0.105 3.895 18 O -0.078 6.078 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.256 4.256 28 C -0.070 4.070 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.186 0.814 37 H 0.164 0.836 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.145 0.855 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.379 1.166 21.186 25.631 hybrid contribution 1.045 -0.836 0.404 1.398 sum -13.333 0.330 21.590 25.377 Atomic orbital electron populations 1.21743 0.95456 1.01691 1.01829 1.21403 0.95874 0.95491 1.02263 1.20377 0.86683 0.98596 1.03850 1.20324 0.93356 1.01883 0.85778 1.41587 1.06267 1.58348 1.08688 0.75000 1.21713 0.85589 1.10775 0.96590 1.22114 0.96004 1.07139 0.93807 1.20211 0.93123 1.18177 0.92462 1.17383 0.85412 0.75796 0.83989 1.90718 1.16600 1.52072 1.84329 1.46096 1.09885 1.74376 1.06486 1.19938 0.94068 1.01477 0.78626 1.19243 1.01516 0.93767 1.06784 1.20537 0.94374 0.96926 0.95498 1.20214 0.99986 0.95813 1.05448 1.19435 0.87979 0.93307 0.88739 1.83975 1.35975 1.33169 1.54631 1.21397 1.07069 0.83303 1.35049 0.88894 1.25316 0.95630 0.99555 0.96044 1.70050 1.18695 1.28731 1.31989 0.85632 0.79108 0.80079 0.78531 1.19049 1.20102 1.20097 1.21162 1.00364 0.98888 1.05191 1.20649 0.94471 0.96176 0.95697 0.92132 0.92717 0.93132 0.90860 0.92870 0.91745 0.87762 0.81432 0.83616 0.76470 0.91714 0.91671 0.86953 0.86414 0.91982 0.85455 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 3 C -0.06 -0.52 5.07 -27.88 -0.14 -0.67 16 4 C 0.10 1.07 6.43 -81.88 -0.53 0.55 16 5 N -0.55 -4.14 5.90 -9.11 -0.05 -4.19 16 6 H 0.41 1.72 8.96 -40.82 -0.37 1.35 16 7 C -0.02 -0.16 11.89 -16.82 -0.20 -0.36 16 8 C -0.17 -1.72 10.56 -37.50 -0.40 -2.12 16 9 C -0.23 -2.84 6.29 -103.35 -0.65 -3.49 16 10 C 0.59 8.51 7.81 -12.59 -0.10 8.42 16 11 O -0.56 -9.29 14.76 5.25 0.08 -9.21 16 12 N -0.72 -9.90 5.54 -62.62 -0.35 -10.25 16 13 C 0.18 2.67 5.80 -5.19 -0.03 2.64 16 14 C -0.21 -3.50 5.25 -104.58 -0.55 -4.05 16 15 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 16 C -0.20 -3.99 9.99 -39.40 -0.39 -4.39 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.17 -4.88 9.76 0.08 0.00 -4.88 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 20 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.24 -4.98 9.17 -39.39 -0.36 -5.34 16 28 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 1.18 6.75 -51.93 -0.35 0.83 16 36 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.35 7.70 -52.48 -0.40 0.95 16 38 H 0.40 5.11 7.59 -40.82 -0.31 4.80 16 39 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 45 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -32.41 382.82 -8.98 -41.38 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.19 Total: 9.68 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.97 Total: -19.38 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.36 Total: -38.52 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.41 -8.98 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817526756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.067 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds