Wall clock time and date at job start Tue Mar 31 2020 15:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 C 1.50697 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.34660 * 125.79859 * 264.96802 * 4 3 2 6 6 H 0.96994 * 124.85577 * 0.02562 * 5 4 3 7 7 C 1.36447 * 110.29666 * 180.02562 * 5 4 3 8 8 C 1.34486 * 108.85730 * 0.23334 * 7 5 4 9 9 C 1.36772 * 125.80418 * 85.00264 * 4 3 2 10 10 C 1.47259 * 126.94018 * 359.97008 * 9 4 3 11 11 O 1.21632 * 120.00462 * 0.02562 * 10 9 4 12 12 N 1.34777 * 120.00244 * 180.02562 * 10 9 4 13 13 C 1.46496 * 120.00366 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47164 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93355 * 269.72672 * 14 13 12 16 16 C 1.38097 * 120.06688 * 179.72227 * 15 14 13 17 17 C 1.38874 * 119.93544 * 0.57402 * 16 15 14 18 18 O 1.35743 * 120.07665 * 179.67857 * 17 16 15 19 19 C 1.34825 * 117.00502 * 174.48889 * 18 17 16 20 20 H 1.08001 * 120.00340 * 5.05614 * 19 18 17 21 21 C 1.38653 * 120.00277 * 185.05687 * 19 18 17 22 22 N 1.31558 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00237 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47051 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47259 * 120.00256 * 23 21 19 26 26 H 1.48500 * 109.47181 * 240.00207 * 23 21 19 27 27 C 1.38886 * 119.86005 * 359.70308 * 17 16 15 28 28 C 1.38109 * 119.92572 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47342 * 60.00201 * 1 2 3 30 30 H 1.08998 * 109.47589 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47314 * 300.00544 * 1 2 3 32 32 H 1.09003 * 109.46826 * 239.99599 * 2 1 3 33 33 H 1.08995 * 109.47041 * 119.99999 * 2 1 3 34 34 H 1.08996 * 109.46958 * 59.99699 * 3 2 1 35 35 H 1.09003 * 109.46783 * 300.00141 * 3 2 1 36 36 H 1.07999 * 125.57559 * 179.97438 * 7 5 4 37 37 H 1.08005 * 126.83901 * 179.75578 * 8 7 5 38 38 H 0.97003 * 119.99422 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47490 * 300.00333 * 13 12 10 40 40 H 1.09002 * 109.46729 * 60.00271 * 13 12 10 41 41 H 1.07995 * 119.96417 * 359.97438 * 15 14 13 42 42 H 1.08008 * 120.03278 * 180.27458 * 16 15 14 43 43 H 0.97010 * 120.00191 * 179.97438 * 22 21 19 44 44 H 1.07990 * 120.03713 * 179.97438 * 27 17 16 45 45 H 1.08004 * 119.96045 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3351 1.5380 1.0870 6 1 4.0142 1.6178 1.9989 7 6 5.6498 1.5066 0.7232 8 6 5.7279 1.3946 -0.6148 9 6 4.3466 1.3459 -1.1060 10 6 3.9092 1.2230 -2.5068 11 8 2.7228 1.1996 -2.7737 12 7 4.8235 1.1365 -3.4932 13 6 4.3884 1.0137 -4.8866 14 6 5.5959 0.9356 -5.7850 15 6 6.1446 2.0933 -6.3058 16 6 7.2545 2.0254 -7.1247 17 6 7.8126 0.7921 -7.4346 18 8 8.8997 0.7216 -8.2445 19 6 9.4599 -0.4931 -8.4129 20 1 8.9950 -1.3669 -7.9806 21 6 10.6328 -0.6208 -9.1411 22 7 11.1995 0.4435 -9.6673 23 14 11.4093 -2.3037 -9.3739 24 1 10.5830 -3.3293 -8.6878 25 1 11.4845 -2.6181 -10.8234 26 1 12.7773 -2.3020 -8.7962 27 6 7.2559 -0.3691 -6.9146 28 6 6.1499 -0.2941 -6.0909 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4903 1.5665 1.3987 37 1 6.6285 1.3479 -1.2092 38 1 5.7698 1.1548 -3.2803 39 1 3.7901 0.1100 -5.0022 40 1 3.7896 1.8831 -5.1582 41 1 5.7070 3.0517 -6.0687 42 1 7.6852 2.9303 -7.5276 43 1 12.0204 0.3543 -10.1765 44 1 7.6874 -1.3297 -7.1541 45 1 5.7162 -1.1968 -5.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817526756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:44 Heat of formation + Delta-G solvation = -33.491722 kcal Electronic energy + Delta-G solvation = -26281.347642 eV Core-core repulsion = 22456.635039 eV Total energy + Delta-G solvation = -3824.712603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.17703 -40.88978 -39.95840 -38.42313 -36.00057 -35.36198 -34.26157 -32.33267 -31.82250 -31.00299 -30.78816 -27.77545 -27.07281 -26.13011 -23.64117 -23.44814 -22.43120 -22.12887 -21.44655 -20.48644 -19.85190 -18.86096 -18.58528 -17.19711 -16.79274 -16.59111 -16.29372 -15.96535 -15.88513 -15.67785 -15.52732 -15.22275 -14.95042 -14.84872 -14.52636 -14.36434 -14.15591 -14.03375 -13.73850 -13.65190 -13.55858 -13.22507 -13.02856 -12.67003 -12.56685 -12.34933 -12.24970 -12.16638 -12.08576 -12.08128 -11.54947 -11.19385 -10.91644 -10.75210 -10.04992 -9.80916 -9.66895 -9.07899 -9.00234 -8.47840 -6.15906 0.55803 0.58082 0.80616 1.36306 1.43667 1.54308 1.58012 2.17403 2.23228 2.59606 2.64508 2.91027 3.20233 3.48819 3.80924 3.87815 4.03902 4.06640 4.14635 4.17952 4.20333 4.36305 4.44715 4.47359 4.57395 4.59807 4.71562 4.79302 4.81967 4.87348 4.98193 5.02494 5.04729 5.13732 5.15269 5.26615 5.27120 5.40333 5.42781 5.52609 5.58526 5.69365 5.76614 5.83716 6.02114 6.03088 6.16327 6.66640 6.78493 6.97046 7.43041 7.76415 8.75193 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002106 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.849784 B =13293.679168 C =13620.458483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.054 4.054 4 C 0.104 3.896 5 N -0.538 5.538 6 H 0.432 0.568 7 C -0.002 4.002 8 C -0.192 4.192 9 C -0.265 4.265 10 C 0.582 3.418 11 O -0.585 6.585 12 N -0.715 5.715 13 C 0.187 3.813 14 C -0.181 4.181 15 C -0.044 4.044 16 C -0.203 4.203 17 C 0.123 3.877 18 O -0.229 6.229 19 C -0.412 4.412 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.269 1.269 26 H -0.268 1.268 27 C -0.242 4.242 28 C -0.047 4.047 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.204 0.796 37 H 0.150 0.850 38 H 0.406 0.594 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 0.260 25.088 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.092 4.092 4 C -0.016 4.016 5 N -0.134 5.134 6 H 0.272 0.728 7 C -0.130 4.130 8 C -0.216 4.216 9 C -0.275 4.275 10 C 0.372 3.628 11 O -0.467 6.467 12 N -0.366 5.366 13 C 0.064 3.936 14 C -0.182 4.182 15 C -0.063 4.063 16 C -0.222 4.222 17 C 0.072 3.928 18 O -0.135 6.135 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.838 3.162 24 H -0.174 1.174 25 H -0.195 1.195 26 H -0.193 1.193 27 C -0.262 4.262 28 C -0.065 4.065 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.221 0.779 37 H 0.167 0.833 38 H 0.242 0.758 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.164 0.836 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.915 0.484 24.772 29.448 hybrid contribution 1.200 -0.498 -0.423 1.367 sum -14.715 -0.014 24.349 28.450 Atomic orbital electron populations 1.21725 0.94532 1.02089 1.02129 1.21342 0.96667 0.95236 1.01333 1.20339 0.86226 0.98612 1.04035 1.20431 0.93864 1.01163 0.86155 1.41593 1.05921 1.56813 1.09060 0.72781 1.22242 0.86436 1.07987 0.96288 1.22284 0.95311 1.08853 0.95121 1.20229 0.94775 1.20775 0.91767 1.17749 0.84975 0.75052 0.84985 1.90701 1.17702 1.53458 1.84887 1.45947 1.10207 1.74507 1.05915 1.19841 0.92846 1.02036 0.78836 1.19510 1.00730 0.93069 1.04877 1.20865 0.92874 0.98771 0.93763 1.20440 1.00893 0.94923 1.05989 1.19969 0.87866 0.95285 0.89702 1.83945 1.38321 1.33658 1.57557 1.21866 1.07704 0.83803 1.35471 0.87946 1.26590 0.95922 1.04038 0.95495 1.70190 1.19783 1.31503 1.34193 0.84527 0.78162 0.74800 0.78717 1.17446 1.19454 1.19314 1.21236 1.01317 0.97882 1.05721 1.20926 0.93180 0.97923 0.94477 0.93467 0.92310 0.91164 0.94058 0.91411 0.88779 0.90289 0.77896 0.83269 0.75804 0.91399 0.91098 0.83648 0.86579 0.91807 0.86146 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 3 C -0.05 -0.90 5.07 29.85 0.15 -0.75 16 4 C 0.10 1.91 6.43 41.78 0.27 2.18 16 5 N -0.54 -6.17 5.90 -182.72 -1.08 -7.24 16 6 H 0.43 1.77 8.96 -92.71 -0.83 0.94 16 7 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 8 C -0.19 -3.56 10.56 23.62 0.25 -3.31 16 9 C -0.27 -6.20 6.29 -19.04 -0.12 -6.32 16 10 C 0.58 16.40 7.81 86.61 0.68 17.08 16 11 O -0.58 -19.34 14.76 -4.13 -0.06 -19.40 16 12 N -0.72 -18.54 5.54 -470.26 -2.61 -21.14 16 13 C 0.19 5.07 5.80 85.63 0.50 5.57 16 14 C -0.18 -5.57 5.25 -19.84 -0.10 -5.67 16 15 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 16 C -0.20 -8.39 9.99 22.39 0.22 -8.17 16 17 C 0.12 5.96 6.65 22.58 0.15 6.11 16 18 O -0.23 -13.54 9.76 -22.61 -0.22 -13.76 16 19 C -0.41 -23.65 9.49 67.92 0.64 -23.00 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -55.83 13.67 21.61 0.30 -55.53 16 23 Si 1.02 42.36 29.55 68.60 2.03 44.39 16 24 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 C -0.24 -10.26 9.17 22.39 0.21 -10.06 16 28 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.95 7.97 -2.39 -0.02 0.93 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.76 6.75 -2.39 -0.02 1.75 16 36 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.15 2.52 7.70 -2.91 -0.02 2.49 16 38 H 0.41 9.66 7.59 -92.71 -0.70 8.96 16 39 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 40 H 0.07 1.90 8.08 -2.39 -0.02 1.89 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 44 H 0.12 5.21 5.64 -2.92 -0.02 5.19 16 45 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -75.79 382.82 3.47 -72.31 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.50 Total: 32.15 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 5.62 Total: -31.77 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.39 Total: -83.92 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.28 Total: -33.16 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -75.79 3.47 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817526756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.821 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds