Wall clock time and date at job start Tue Mar 31 2020 16:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81397 * 102.99933 * 2 1 4 4 H 1.09003 * 110.43239 * 52.45952 * 3 2 1 5 5 C 1.54889 * 110.48581 * 289.77893 * 3 2 1 6 6 C 1.54893 * 102.74319 * 203.37907 * 5 3 2 7 7 C 1.54265 * 104.19827 * 37.94122 * 6 5 3 8 8 H 1.09003 * 110.07271 * 95.69458 * 7 6 5 9 9 N 1.46498 * 110.03065 * 217.10430 * 7 6 5 10 10 C 1.34776 * 119.99943 * 272.16737 * 9 7 6 11 11 O 1.21348 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.49450 * 119.99999 * 180.02562 * 10 9 7 13 13 O 1.21348 * 119.99955 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99999 * 179.97438 * 12 10 9 15 15 C 1.46502 * 120.00301 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47601 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46626 * 60.00351 * 16 15 14 18 18 C 1.52994 * 109.47344 * 300.00576 * 16 15 14 19 19 C 1.50704 * 109.47223 * 179.97438 * 16 15 14 20 20 H 1.08000 * 119.99431 * 357.91267 * 19 16 15 21 21 C 1.37869 * 119.99670 * 177.90935 * 19 16 15 22 22 N 1.31515 * 120.00408 * 7.60513 * 21 19 16 23 23 Si 1.86807 * 119.99964 * 187.60399 * 21 19 16 24 24 H 1.48500 * 109.46722 * 265.12340 * 23 21 19 25 25 H 1.48499 * 109.47095 * 145.12403 * 23 21 19 26 26 H 1.48502 * 109.46914 * 25.12223 * 23 21 19 27 27 C 1.53872 * 106.59489 * 336.38816 * 7 6 5 28 28 H 1.08995 * 109.47066 * 59.99796 * 1 2 3 29 29 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 299.99441 * 1 2 3 31 31 H 1.08999 * 110.75459 * 321.69207 * 5 3 2 32 32 H 1.08994 * 110.75816 * 84.88267 * 5 3 2 33 33 H 1.09002 * 110.48810 * 279.25735 * 6 5 3 34 34 H 1.09008 * 110.48427 * 156.61932 * 6 5 3 35 35 H 0.97002 * 120.00368 * 92.16663 * 9 7 6 36 36 H 0.97001 * 120.00493 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.46934 * 59.99727 * 15 14 12 38 38 H 1.09000 * 109.47302 * 300.00697 * 15 14 12 39 39 H 1.09000 * 109.46810 * 185.79122 * 17 16 15 40 40 H 1.08999 * 109.47030 * 305.79270 * 17 16 15 41 41 H 1.08998 * 109.47195 * 65.79407 * 17 16 15 42 42 H 1.09001 * 109.46821 * 299.99545 * 18 16 15 43 43 H 1.09002 * 109.47123 * 59.99823 * 18 16 15 44 44 H 1.08997 * 109.47247 * 179.97438 * 18 16 15 45 45 H 0.96999 * 120.00331 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.03177 * 119.28837 * 27 7 6 47 47 H 1.09007 * 110.02771 * 240.66289 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7013 2.2783 0.8099 5 6 1.8656 2.4061 -1.3653 6 6 2.7889 3.6489 -1.4127 7 6 4.1066 3.1659 -0.7723 8 1 4.8067 2.8535 -1.5472 9 7 4.6959 4.2386 0.0330 10 6 5.5242 5.1341 -0.5401 11 8 5.7824 5.0516 -1.7229 12 6 6.1258 6.2280 0.2815 13 8 5.8680 6.3102 1.4644 14 7 6.9546 7.1232 -0.2914 15 6 7.5438 8.1959 0.5137 16 6 8.4388 9.0655 -0.3716 17 6 7.6030 9.6746 -1.4993 18 6 9.5538 8.2058 -0.9703 19 6 9.0444 10.1693 0.4566 20 1 8.7877 10.2634 1.5014 21 6 9.9261 11.0589 -0.1195 22 7 10.1247 11.0394 -1.4195 23 14 10.8389 12.2920 0.9463 24 1 10.0976 13.5788 0.9597 25 1 12.2003 12.5108 0.3949 26 1 10.9442 11.7668 2.3313 27 6 3.7462 1.9697 0.1259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0952 1.7229 -2.1830 32 1 0.8163 2.6997 -1.3923 33 1 2.3595 4.4655 -0.8323 34 1 2.9574 3.9599 -2.4438 35 1 4.4898 4.3044 0.9786 36 1 7.1609 7.0573 -1.2370 37 1 8.1395 7.7620 1.3169 38 1 6.7494 8.8081 0.9407 39 1 8.2570 10.2095 -2.1879 40 1 7.0824 8.8809 -2.0351 41 1 6.8744 10.3673 -1.0781 42 1 10.1491 7.7719 -0.1669 43 1 9.1153 7.4078 -1.5695 44 1 10.1910 8.8253 -1.6014 45 1 10.7448 11.6655 -1.8249 46 1 4.2706 1.0765 -0.2135 47 1 4.0106 2.1870 1.1609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817832913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:39 Heat of formation + Delta-G solvation = -87.389596 kcal Electronic energy + Delta-G solvation = -25746.043952 eV Core-core repulsion = 22054.438113 eV Total energy + Delta-G solvation = -3691.605839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59057 -38.98211 -37.73802 -36.48808 -34.11891 -33.17905 -30.90651 -29.62217 -29.25108 -28.26237 -26.16398 -25.73922 -25.24914 -23.37081 -21.44195 -20.77591 -20.28485 -19.01494 -18.20510 -17.21993 -16.76354 -16.18818 -15.78409 -15.61937 -15.23055 -14.96012 -14.80410 -14.46567 -14.16539 -14.00338 -13.82588 -13.60218 -13.51302 -12.93711 -12.78064 -12.40074 -12.34056 -12.22723 -11.91714 -11.65833 -11.54681 -11.45823 -11.37776 -11.19122 -11.12108 -10.89154 -10.70093 -10.41285 -10.28416 -10.21429 -9.65899 -9.56158 -9.36078 -9.23887 -8.83342 -8.61358 -8.36075 -8.10915 -6.04344 -4.13314 1.23598 1.63169 2.11200 2.54605 3.26950 3.34873 3.38971 3.44163 3.87171 3.97234 4.04736 4.38565 4.57364 4.68323 4.70825 4.78076 4.85188 4.92773 4.94681 4.97257 5.12775 5.22635 5.24785 5.30506 5.54426 5.63745 5.75927 5.81695 6.09804 6.20541 6.22051 6.45531 6.61661 6.80669 6.83725 6.92379 6.98449 7.07964 7.32282 7.53835 7.65680 7.70510 7.95082 7.96982 8.11236 8.30497 8.39745 8.86302 9.51974 10.97642 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.001930 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.468002 B =14502.606421 C =14727.111402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.257 6.257 3 C -0.059 4.059 4 H 0.094 0.906 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.143 3.857 8 H 0.101 0.899 9 N -0.702 5.702 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.495 3.505 13 O -0.536 6.536 14 N -0.680 5.680 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.509 4.509 20 H 0.058 0.942 21 C 0.068 3.932 22 N -0.882 5.882 23 Si 0.892 3.108 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.108 4.108 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.006 0.994 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.010 0.990 44 H 0.082 0.918 45 H 0.260 0.740 46 H 0.088 0.912 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 -19.387 0.259 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.029 6.029 3 C -0.188 4.188 4 H 0.113 0.887 5 C -0.156 4.156 6 C -0.174 4.174 7 C 0.038 3.962 8 H 0.119 0.881 9 N -0.356 5.356 10 C 0.290 3.710 11 O -0.393 6.393 12 C 0.274 3.726 13 O -0.414 6.414 14 N -0.332 5.332 15 C 0.006 3.994 16 C 0.054 3.946 17 C -0.189 4.189 18 C -0.190 4.190 19 C -0.547 4.547 20 H 0.077 0.923 21 C -0.134 4.134 22 N -0.520 5.520 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.619 -20.180 0.122 26.143 hybrid contribution -0.407 1.707 0.618 1.861 sum -17.027 -18.473 0.740 25.134 Atomic orbital electron populations 1.23376 0.94269 1.06441 1.04998 1.86927 1.07391 1.10717 1.97873 1.24044 0.99837 0.93577 1.01384 0.88739 1.22854 0.99839 0.97145 0.95713 1.22828 0.94475 0.97740 1.02324 1.21676 0.95292 0.85777 0.93482 0.88112 1.45946 1.46970 1.28672 1.14010 1.20512 0.79513 0.83172 0.87792 1.90753 1.59788 1.73294 1.15503 1.19973 0.81429 0.83559 0.87625 1.90724 1.61062 1.74299 1.15351 1.46237 1.44103 1.27969 1.14847 1.21932 0.96534 0.86630 0.94278 1.18395 0.91163 0.92356 0.92664 1.21886 0.98895 0.98349 0.99780 1.21819 1.00059 0.97445 0.99659 1.20925 1.25956 1.11814 0.96042 0.92337 1.24878 0.96605 0.97043 0.94883 1.69847 1.35902 1.37143 1.09150 0.86574 0.79276 0.81340 0.80778 1.20828 1.21180 1.19836 1.22249 0.92876 0.98400 1.01215 0.90383 0.88180 0.90517 0.89689 0.90993 0.90619 0.90124 0.75140 0.75170 0.91969 0.91997 0.89455 0.97513 0.95166 0.95242 0.97091 0.89922 0.92967 0.89371 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.72 101.05 1.08 0.49 16 2 S -0.26 -1.91 21.63 -107.50 -2.33 -4.24 16 3 C -0.06 -0.39 3.36 -25.08 -0.08 -0.48 16 4 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.12 -0.73 6.30 -24.74 -0.16 -0.89 16 6 C -0.13 -1.08 6.53 -25.07 -0.16 -1.24 16 7 C 0.14 1.29 3.25 -66.82 -0.22 1.07 16 8 H 0.10 1.03 7.56 -51.93 -0.39 0.64 16 9 N -0.70 -7.72 5.03 -53.15 -0.27 -7.99 16 10 C 0.51 7.49 7.89 -11.59 -0.09 7.40 16 11 O -0.52 -8.63 16.13 5.50 0.09 -8.54 16 12 C 0.49 8.49 7.89 -11.59 -0.09 8.40 16 13 O -0.54 -10.05 16.48 5.50 0.09 -9.96 16 14 N -0.68 -12.46 4.90 -60.73 -0.30 -12.76 16 15 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 16 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 17 C -0.13 -2.99 8.07 37.16 0.30 -2.69 16 18 C -0.13 -2.99 8.06 37.15 0.30 -2.69 16 19 C -0.51 -13.13 8.00 -34.44 -0.28 -13.41 16 20 H 0.06 1.51 7.76 -52.49 -0.41 1.10 16 21 C 0.07 1.77 5.12 -17.82 -0.09 1.68 16 22 N -0.88 -23.45 9.48 55.43 0.53 -22.93 16 23 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 C -0.11 -0.78 6.16 -25.62 -0.16 -0.94 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.41 4.08 7.79 -40.82 -0.32 3.76 16 36 H 0.41 7.42 5.63 -40.82 -0.23 7.19 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.09 2.19 6.16 -51.93 -0.32 1.87 16 40 H 0.01 0.12 6.72 -51.93 -0.35 -0.23 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.01 0.21 6.86 -51.93 -0.36 -0.15 16 44 H 0.08 2.06 6.21 -51.93 -0.32 1.74 16 45 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 46 H 0.09 0.66 7.79 -51.93 -0.40 0.25 16 47 H 0.09 0.57 7.62 -51.92 -0.40 0.18 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -28.34 386.79 -8.81 -37.15 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.69 Total: 7.40 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.26 Total: 0.53 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.04 Total: -43.68 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.18 Total: -18.50 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.33 Total: -4.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.34 -8.81 -37.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817832913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.235 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds