Wall clock time and date at job start Tue Mar 31 2020 16:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81397 * 102.99933 * 2 1 4 4 H 1.09003 * 110.43239 * 52.45952 * 3 2 1 5 5 C 1.54889 * 110.48581 * 289.77893 * 3 2 1 6 6 C 1.54893 * 102.74319 * 203.37907 * 5 3 2 7 7 C 1.54265 * 104.19827 * 37.94122 * 6 5 3 8 8 H 1.09003 * 110.07271 * 95.69458 * 7 6 5 9 9 N 1.46498 * 110.03065 * 217.10430 * 7 6 5 10 10 C 1.34776 * 119.99943 * 272.16737 * 9 7 6 11 11 O 1.21348 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.49450 * 119.99999 * 180.02562 * 10 9 7 13 13 O 1.21348 * 119.99955 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99999 * 179.97438 * 12 10 9 15 15 C 1.46502 * 120.00301 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47601 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46626 * 60.00351 * 16 15 14 18 18 C 1.52994 * 109.47344 * 300.00576 * 16 15 14 19 19 C 1.50704 * 109.47223 * 179.97438 * 16 15 14 20 20 H 1.08000 * 119.99431 * 357.91267 * 19 16 15 21 21 C 1.37869 * 119.99670 * 177.90935 * 19 16 15 22 22 N 1.31515 * 120.00408 * 7.60513 * 21 19 16 23 23 Si 1.86807 * 119.99964 * 187.60399 * 21 19 16 24 24 H 1.48500 * 109.46722 * 265.12340 * 23 21 19 25 25 H 1.48499 * 109.47095 * 145.12403 * 23 21 19 26 26 H 1.48502 * 109.46914 * 25.12223 * 23 21 19 27 27 C 1.53872 * 106.59489 * 336.38816 * 7 6 5 28 28 H 1.08995 * 109.47066 * 59.99796 * 1 2 3 29 29 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 299.99441 * 1 2 3 31 31 H 1.08999 * 110.75459 * 321.69207 * 5 3 2 32 32 H 1.08994 * 110.75816 * 84.88267 * 5 3 2 33 33 H 1.09002 * 110.48810 * 279.25735 * 6 5 3 34 34 H 1.09008 * 110.48427 * 156.61932 * 6 5 3 35 35 H 0.97002 * 120.00368 * 92.16663 * 9 7 6 36 36 H 0.97001 * 120.00493 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.46934 * 59.99727 * 15 14 12 38 38 H 1.09000 * 109.47302 * 300.00697 * 15 14 12 39 39 H 1.09000 * 109.46810 * 185.79122 * 17 16 15 40 40 H 1.08999 * 109.47030 * 305.79270 * 17 16 15 41 41 H 1.08998 * 109.47195 * 65.79407 * 17 16 15 42 42 H 1.09001 * 109.46821 * 299.99545 * 18 16 15 43 43 H 1.09002 * 109.47123 * 59.99823 * 18 16 15 44 44 H 1.08997 * 109.47247 * 179.97438 * 18 16 15 45 45 H 0.96999 * 120.00331 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.03177 * 119.28837 * 27 7 6 47 47 H 1.09007 * 110.02771 * 240.66289 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7013 2.2783 0.8099 5 6 1.8656 2.4061 -1.3653 6 6 2.7889 3.6489 -1.4127 7 6 4.1066 3.1659 -0.7723 8 1 4.8067 2.8535 -1.5472 9 7 4.6959 4.2386 0.0330 10 6 5.5242 5.1341 -0.5401 11 8 5.7824 5.0516 -1.7229 12 6 6.1258 6.2280 0.2815 13 8 5.8680 6.3102 1.4644 14 7 6.9546 7.1232 -0.2914 15 6 7.5438 8.1959 0.5137 16 6 8.4388 9.0655 -0.3716 17 6 7.6030 9.6746 -1.4993 18 6 9.5538 8.2058 -0.9703 19 6 9.0444 10.1693 0.4566 20 1 8.7877 10.2634 1.5014 21 6 9.9261 11.0589 -0.1195 22 7 10.1247 11.0394 -1.4195 23 14 10.8389 12.2920 0.9463 24 1 10.0976 13.5788 0.9597 25 1 12.2003 12.5108 0.3949 26 1 10.9442 11.7668 2.3313 27 6 3.7462 1.9697 0.1259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0952 1.7229 -2.1830 32 1 0.8163 2.6997 -1.3923 33 1 2.3595 4.4655 -0.8323 34 1 2.9574 3.9599 -2.4438 35 1 4.4898 4.3044 0.9786 36 1 7.1609 7.0573 -1.2370 37 1 8.1395 7.7620 1.3169 38 1 6.7494 8.8081 0.9407 39 1 8.2570 10.2095 -2.1879 40 1 7.0824 8.8809 -2.0351 41 1 6.8744 10.3673 -1.0781 42 1 10.1491 7.7719 -0.1669 43 1 9.1153 7.4078 -1.5695 44 1 10.1910 8.8253 -1.6014 45 1 10.7448 11.6655 -1.8249 46 1 4.2706 1.0765 -0.2135 47 1 4.0106 2.1870 1.1609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817832913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:38 Heat of formation + Delta-G solvation = -104.024398 kcal Electronic energy + Delta-G solvation = -25746.765291 eV Core-core repulsion = 22054.438113 eV Total energy + Delta-G solvation = -3692.327178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79924 -40.12855 -38.74426 -38.19057 -35.36709 -34.59006 -32.74822 -30.11138 -29.83096 -29.03117 -27.70303 -27.59251 -27.12619 -24.71627 -22.03272 -21.63902 -21.47874 -20.70784 -19.58058 -18.20051 -17.79644 -17.49555 -17.04217 -16.96314 -16.62650 -16.20228 -15.78725 -15.63603 -15.31312 -14.95069 -14.75510 -14.63304 -14.35481 -14.22948 -14.07617 -14.04236 -13.28363 -13.13857 -13.10095 -12.88406 -12.81986 -12.70976 -12.58307 -12.52378 -12.27498 -12.19194 -12.12295 -12.02322 -11.79047 -11.50493 -11.30026 -10.78925 -10.78092 -10.63602 -10.38977 -10.31135 -10.11422 -8.66061 -8.02317 -6.16790 0.34848 0.74758 1.35144 1.43705 1.47643 1.56190 1.65644 2.14920 2.45527 2.71193 3.21905 3.37463 3.39619 3.50139 3.99560 4.23445 4.26933 4.29864 4.34230 4.34614 4.38163 4.39984 4.47302 4.52736 4.68063 4.73296 4.91233 4.92546 4.93571 5.01114 5.03543 5.05399 5.12451 5.16427 5.19061 5.21787 5.34779 5.48409 5.64277 5.68792 5.95522 6.09527 6.18716 6.39247 6.41277 6.74837 6.87094 6.97159 7.50450 8.97593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.001930 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.468002 B =14502.606421 C =14727.111402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.301 6.301 3 C -0.049 4.049 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.089 0.911 9 N -0.682 5.682 10 C 0.515 3.485 11 O -0.540 6.540 12 C 0.497 3.503 13 O -0.551 6.551 14 N -0.682 5.682 15 C 0.143 3.857 16 C 0.048 3.952 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.027 3.973 22 N -0.899 5.899 23 Si 0.946 3.054 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.103 4.103 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.419 0.581 36 H 0.413 0.587 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.031 0.969 44 H 0.058 0.942 45 H 0.260 0.740 46 H 0.086 0.914 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.910 -20.468 0.715 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.073 6.073 3 C -0.178 4.178 4 H 0.122 0.878 5 C -0.146 4.146 6 C -0.171 4.171 7 C 0.036 3.964 8 H 0.108 0.892 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.417 6.417 12 C 0.277 3.723 13 O -0.430 6.430 14 N -0.334 5.334 15 C 0.021 3.979 16 C 0.048 3.952 17 C -0.178 4.178 18 C -0.180 4.180 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.173 4.173 22 N -0.538 5.538 23 Si 0.773 3.227 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.141 4.141 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.129 -21.292 0.594 27.971 hybrid contribution -0.015 1.978 0.494 2.038 sum -18.145 -19.315 1.088 26.523 Atomic orbital electron populations 1.23423 0.91603 1.07249 1.05842 1.87097 1.10432 1.11771 1.97972 1.23982 0.99202 0.92883 1.01755 0.87820 1.22800 1.00222 0.96053 0.95549 1.22775 0.94153 0.98533 1.01614 1.21835 0.95412 0.85678 0.93438 0.89248 1.45939 1.45299 1.27820 1.14513 1.20001 0.80127 0.83153 0.87146 1.90755 1.60949 1.73872 1.16082 1.20374 0.80682 0.83626 0.87586 1.90714 1.61407 1.74725 1.16169 1.46086 1.44662 1.27926 1.14700 1.21529 0.95829 0.86848 0.93734 1.18405 0.91692 0.92305 0.92827 1.21722 0.98245 0.98598 0.99281 1.21667 0.99547 0.97471 0.99305 1.21216 1.26393 1.12801 0.96093 0.93033 1.25491 0.97339 0.98604 0.95862 1.69960 1.36148 1.37630 1.10046 0.85730 0.78146 0.79439 0.79387 1.20676 1.21041 1.19713 1.22191 0.93567 0.97269 1.01119 0.89483 0.87441 0.89696 0.89854 0.89529 0.90602 0.90999 0.74251 0.74902 0.92670 0.92738 0.91762 0.95272 0.95952 0.95553 0.94960 0.92297 0.93077 0.89532 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.72 113.37 1.21 0.37 16 2 S -0.30 -3.98 21.63 -56.49 -1.22 -5.20 16 3 C -0.05 -0.54 3.36 31.67 0.11 -0.44 16 4 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.12 6.30 31.89 0.20 -0.92 16 6 C -0.13 -1.89 6.53 31.67 0.21 -1.68 16 7 C 0.14 2.33 3.25 45.71 0.15 2.48 16 8 H 0.09 1.75 7.56 -2.39 -0.02 1.73 16 9 N -0.68 -13.95 5.03 -440.44 -2.21 -16.16 16 10 C 0.52 14.55 7.89 87.27 0.69 15.23 16 11 O -0.54 -17.40 16.13 -3.24 -0.05 -17.45 16 12 C 0.50 16.53 7.89 87.27 0.69 17.22 16 13 O -0.55 -20.06 16.48 -3.24 -0.05 -20.11 16 14 N -0.68 -24.41 4.90 -464.41 -2.28 -26.68 16 15 C 0.14 5.90 4.50 86.38 0.39 6.29 16 16 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 17 C -0.12 -5.48 8.07 71.98 0.58 -4.90 16 18 C -0.12 -5.50 8.06 71.98 0.58 -4.92 16 19 C -0.53 -27.28 8.00 25.60 0.20 -27.08 16 20 H 0.05 2.68 7.76 -2.91 -0.02 2.66 16 21 C 0.03 1.41 5.12 84.65 0.43 1.85 16 22 N -0.90 -48.14 9.48 21.44 0.20 -47.94 16 23 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.10 -1.29 6.16 31.31 0.19 -1.10 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.42 7.49 7.79 -92.71 -0.72 6.77 16 36 H 0.41 14.46 5.63 -92.71 -0.52 13.94 16 37 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 3.23 6.16 -2.39 -0.01 3.22 16 40 H 0.03 1.15 6.72 -2.39 -0.02 1.13 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 44 H 0.06 2.94 6.21 -2.39 -0.01 2.93 16 45 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 46 H 0.09 1.17 7.79 -2.39 -0.02 1.15 16 47 H 0.09 1.05 7.62 -2.38 -0.02 1.03 16 Total: -1.00 -59.69 386.79 1.75 -57.94 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.27 Total: 26.84 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.61 Total: 4.60 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -4.29 Total: -90.78 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.11 Total: -37.57 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -1.22 Total: -5.20 kcal Total: -59.69 1.75 -57.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817832913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.085 kcal (2) G-P(sol) polarization free energy of solvation -59.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds