Wall clock time and date at job start Tue Mar 31 2020 16:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81395 * 103.00250 * 2 1 4 4 H 1.09004 * 110.53927 * 307.61025 * 3 2 1 5 5 C 1.54891 * 110.48743 * 70.22327 * 3 2 1 6 6 C 1.54888 * 102.75120 * 156.61977 * 5 3 2 7 7 C 1.54261 * 104.19672 * 322.06034 * 6 5 3 8 8 H 1.08998 * 110.03492 * 264.32506 * 7 6 5 9 9 N 1.46503 * 110.07663 * 142.91518 * 7 6 5 10 10 C 1.34772 * 120.00026 * 87.80597 * 9 7 6 11 11 O 1.21357 * 119.99771 * 0.02562 * 10 9 7 12 12 C 1.49444 * 120.00266 * 180.02562 * 10 9 7 13 13 O 1.21356 * 119.99727 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00266 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00283 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.52991 * 109.46973 * 299.99672 * 16 15 14 18 18 C 1.52999 * 109.47045 * 59.99850 * 16 15 14 19 19 C 1.50699 * 109.46832 * 179.97438 * 16 15 14 20 20 H 1.08000 * 120.00323 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99770 * 179.97438 * 19 16 15 22 22 N 1.31510 * 120.00192 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00136 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47148 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47074 * 119.99885 * 23 21 19 26 26 H 1.48498 * 109.47687 * 239.99924 * 23 21 19 27 27 C 1.53876 * 106.59990 * 23.60631 * 7 6 5 28 28 H 1.09006 * 109.46905 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46930 * 300.00199 * 1 2 3 31 31 H 1.09005 * 110.75269 * 38.30481 * 5 3 2 32 32 H 1.09004 * 110.91555 * 275.01295 * 5 3 2 33 33 H 1.09000 * 110.48622 * 203.37816 * 6 5 3 34 34 H 1.09001 * 110.59737 * 80.79460 * 6 5 3 35 35 H 0.96995 * 119.99741 * 267.81177 * 9 7 6 36 36 H 0.96995 * 120.00233 * 0.02562 * 14 12 10 37 37 H 1.09007 * 109.46946 * 300.00210 * 15 14 12 38 38 H 1.09003 * 109.47308 * 59.99761 * 15 14 12 39 39 H 1.08999 * 109.47543 * 60.00213 * 17 16 15 40 40 H 1.09007 * 109.47060 * 180.02562 * 17 16 15 41 41 H 1.08996 * 109.47445 * 300.00144 * 17 16 15 42 42 H 1.09004 * 109.47423 * 59.99756 * 18 16 15 43 43 H 1.08998 * 109.47118 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.47374 * 300.00150 * 18 16 15 45 45 H 0.97004 * 120.00671 * 180.02562 * 22 21 19 46 46 H 1.08995 * 110.03160 * 119.28453 * 27 7 6 47 47 H 1.08998 * 110.03319 * 240.71542 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7012 2.2802 -0.8086 5 6 1.8658 2.4061 1.3654 6 6 2.7890 3.6488 1.4129 7 6 4.1067 3.1659 0.7724 8 1 4.8061 2.8532 1.5477 9 7 4.6971 4.2381 -0.0326 10 6 5.5256 5.1332 0.5408 11 8 5.7828 5.0507 1.7239 12 6 6.1274 6.2273 -0.2803 13 8 5.8698 6.3100 -1.4633 14 7 6.9563 7.1221 0.2930 15 6 7.5459 8.1949 -0.5117 16 6 8.4408 9.0640 0.3740 17 6 7.6052 9.6729 1.5017 18 6 9.5557 8.2039 0.9725 19 6 9.0477 10.1672 -0.4540 20 1 8.8184 10.2408 -1.5068 21 6 9.8958 11.0826 0.1325 22 7 10.1754 10.9927 1.4143 23 14 10.6487 12.4496 -0.8940 24 1 10.1791 12.3306 -2.2978 25 1 10.2358 13.7660 -0.3445 26 1 12.1291 12.3396 -0.8557 27 6 3.7463 1.9697 -0.1259 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.0953 1.7228 2.1831 32 1 0.8172 2.7025 1.3945 33 1 2.9574 3.9598 2.4439 34 1 2.3608 4.4670 0.8338 35 1 4.4917 4.3038 -0.9783 36 1 7.1625 7.0558 1.2385 37 1 8.1415 7.7612 -1.3150 38 1 6.7516 8.8075 -0.9385 39 1 7.1666 8.8747 2.1006 40 1 8.2428 10.2924 2.1326 41 1 6.8110 10.2856 1.0754 42 1 10.1510 7.7700 0.1690 43 1 10.1935 8.8231 1.6031 44 1 9.1171 7.4057 1.5712 45 1 10.7718 11.6369 1.8271 46 1 4.0098 2.1872 -1.1609 47 1 4.2708 1.0765 0.2136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817832915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:44 Heat of formation + Delta-G solvation = -104.362807 kcal Electronic energy + Delta-G solvation = -25747.021475 eV Core-core repulsion = 22054.679622 eV Total energy + Delta-G solvation = -3692.341853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79869 -40.12751 -38.74391 -38.19215 -35.37200 -34.59180 -32.74272 -30.11123 -29.83233 -29.03121 -27.70227 -27.58829 -27.13118 -24.71623 -22.03277 -21.63840 -21.47898 -20.71008 -19.58101 -18.20160 -17.79840 -17.49736 -17.04440 -16.96397 -16.63359 -16.20296 -15.78861 -15.63767 -15.30717 -14.95153 -14.76445 -14.63257 -14.35428 -14.22939 -14.07664 -14.04282 -13.22866 -13.14760 -13.12809 -12.88768 -12.82300 -12.71120 -12.56258 -12.52455 -12.28147 -12.19111 -12.12014 -12.02239 -11.78848 -11.50920 -11.30050 -10.79111 -10.76228 -10.62480 -10.41496 -10.31409 -10.11836 -8.66035 -8.01479 -6.17796 0.34709 0.74780 1.35154 1.43117 1.47721 1.56722 1.65660 2.14803 2.45398 2.71186 3.22433 3.37497 3.39486 3.50011 3.99527 4.23352 4.26951 4.29764 4.34277 4.34652 4.38183 4.39993 4.47274 4.52658 4.67893 4.73230 4.91270 4.92304 4.93412 5.01134 5.03953 5.05817 5.12422 5.17165 5.19000 5.21903 5.34697 5.48318 5.64705 5.67986 5.95450 6.11297 6.19028 6.39498 6.41645 6.74749 6.86850 6.97061 7.50166 8.97919 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.041915 B = 0.001929 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.850534 B =14509.974928 C =14721.334523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.300 6.300 3 C -0.049 4.049 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.089 0.911 9 N -0.682 5.682 10 C 0.515 3.485 11 O -0.540 6.540 12 C 0.497 3.503 13 O -0.551 6.551 14 N -0.682 5.682 15 C 0.143 3.857 16 C 0.048 3.952 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.524 4.524 20 H 0.051 0.949 21 C 0.025 3.975 22 N -0.901 5.901 23 Si 0.948 3.052 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.102 4.102 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.413 0.587 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.063 0.937 44 H 0.029 0.971 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.128 -20.238 -0.705 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.072 6.072 3 C -0.178 4.178 4 H 0.122 0.878 5 C -0.146 4.146 6 C -0.171 4.171 7 C 0.036 3.964 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.417 6.417 12 C 0.277 3.723 13 O -0.430 6.430 14 N -0.333 5.333 15 C 0.020 3.980 16 C 0.048 3.952 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.562 4.562 20 H 0.070 0.930 21 C -0.175 4.175 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.141 4.141 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.351 -21.060 -0.589 27.940 hybrid contribution -0.067 2.008 -0.468 2.063 sum -18.417 -19.052 -1.058 26.520 Atomic orbital electron populations 1.23421 0.91610 1.07250 1.05844 1.87095 1.10426 1.11738 1.97968 1.23979 0.99196 0.92891 1.01752 0.87816 1.22802 1.00227 0.96034 0.95566 1.22773 0.94164 0.98535 1.01615 1.21835 0.95406 0.85690 0.93445 0.89265 1.45936 1.45264 1.27864 1.14496 1.20002 0.80128 0.83152 0.87148 1.90757 1.60978 1.73870 1.16066 1.20373 0.80687 0.83630 0.87585 1.90716 1.61427 1.74728 1.16158 1.46077 1.44630 1.27937 1.14702 1.21545 0.95827 0.86848 0.93736 1.18403 0.91675 0.92336 0.92820 1.21695 0.98195 0.99243 0.98954 1.21699 0.99632 0.97431 0.99344 1.21260 1.27775 1.11814 0.95367 0.93031 1.25503 0.96641 0.99414 0.95893 1.69930 1.36356 1.36702 1.10971 0.85655 0.78054 0.79515 0.79254 1.19628 1.20932 1.20949 1.22192 0.93566 0.97264 1.01113 0.89694 0.87440 0.89483 0.89857 0.89520 0.91020 0.90604 0.74251 0.74917 0.92742 0.92687 0.95150 0.91827 0.95744 0.95779 0.91824 0.95166 0.93069 0.88878 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.72 113.37 1.21 0.37 16 2 S -0.30 -3.97 21.63 -56.49 -1.22 -5.19 16 3 C -0.05 -0.54 3.36 31.67 0.11 -0.44 16 4 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 5 C -0.11 -1.12 6.30 31.89 0.20 -0.92 16 6 C -0.13 -1.89 6.53 31.67 0.21 -1.69 16 7 C 0.14 2.33 3.24 45.71 0.15 2.48 16 8 H 0.09 1.75 7.56 -2.39 -0.02 1.73 16 9 N -0.68 -13.98 5.03 -440.44 -2.22 -16.19 16 10 C 0.52 14.58 7.89 87.27 0.69 15.27 16 11 O -0.54 -17.45 16.13 -3.27 -0.05 -17.50 16 12 C 0.50 16.56 7.89 87.27 0.69 17.25 16 13 O -0.55 -20.09 16.48 -3.27 -0.05 -20.15 16 14 N -0.68 -24.46 4.95 -464.40 -2.30 -26.76 16 15 C 0.14 5.90 4.50 86.38 0.39 6.29 16 16 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 17 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 18 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 19 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 20 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 21 C 0.03 1.31 5.15 84.66 0.44 1.75 16 22 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 23 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.10 -1.30 6.16 31.32 0.19 -1.10 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.94 8.05 -2.38 -0.02 0.92 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 35 H 0.42 7.51 7.79 -92.71 -0.72 6.79 16 36 H 0.41 14.51 5.63 -92.71 -0.52 13.99 16 37 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 40 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 44 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 45 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 46 H 0.09 1.06 7.62 -2.39 -0.02 1.04 16 47 H 0.09 1.18 7.79 -2.39 -0.02 1.16 16 Total: -1.00 -59.66 386.69 1.73 -57.93 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.27 Total: 27.08 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.61 Total: 4.56 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -4.31 Total: -90.92 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.11 Total: -37.65 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.22 Total: -5.19 kcal Total: -59.66 1.73 -57.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817832915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.428 kcal (2) G-P(sol) polarization free energy of solvation -59.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds