Wall clock time and date at job start Tue Mar 31 2020 15:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47066 * 120.00225 * 2 1 3 5 5 C 1.50700 * 109.46865 * 240.00378 * 2 1 3 6 6 N 1.36879 * 126.59183 * 5.70262 * 5 2 1 7 7 H 0.96996 * 126.39602 * 359.97438 * 6 5 2 8 8 C 1.35042 * 107.20623 * 179.97438 * 6 5 2 9 9 N 1.30498 * 108.69753 * 359.97438 * 8 6 5 10 10 C 1.34126 * 109.25693 * 359.76067 * 9 8 6 11 11 C 1.50698 * 125.98617 * 180.24762 * 10 9 8 12 12 O 1.45199 * 109.47275 * 276.17313 * 11 10 9 13 13 C 1.34705 * 117.00447 * 180.02562 * 12 11 10 14 14 O 1.21467 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.47767 * 120.00245 * 180.02562 * 13 12 11 16 16 C 1.39973 * 120.02787 * 359.71954 * 15 13 12 17 17 C 1.38319 * 120.34609 * 179.74420 * 16 15 13 18 18 C 1.37760 * 120.42134 * 0.56037 * 17 16 15 19 19 C 1.40751 * 120.05067 * 359.69747 * 18 17 16 20 20 C 1.41434 * 120.17314 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00360 * 334.46793 * 20 19 18 22 22 C 1.39937 * 119.99771 * 154.47478 * 20 19 18 23 23 N 1.30824 * 119.99956 * 342.14894 * 22 20 19 24 24 Si 1.86801 * 119.99996 * 162.15528 * 22 20 19 25 25 H 1.48497 * 109.47523 * 89.99673 * 24 22 20 26 26 H 1.48500 * 109.47305 * 209.99883 * 24 22 20 27 27 H 1.48498 * 109.47124 * 329.99414 * 24 22 20 28 28 C 1.39050 * 120.02942 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47237 * 59.99115 * 1 2 3 31 31 H 1.09003 * 109.46774 * 299.99658 * 1 2 3 32 32 H 1.09000 * 109.46777 * 64.95003 * 3 2 1 33 33 H 1.08993 * 109.47204 * 184.94726 * 3 2 1 34 34 H 1.09004 * 109.47177 * 304.95033 * 3 2 1 35 35 H 1.08996 * 109.47200 * 59.99925 * 4 2 1 36 36 H 1.08999 * 109.46784 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47054 * 299.99786 * 4 2 1 38 38 H 1.08003 * 125.64973 * 180.02562 * 8 6 5 39 39 H 1.08992 * 109.47868 * 36.17847 * 11 10 9 40 40 H 1.09005 * 109.46910 * 156.17950 * 11 10 9 41 41 H 1.07994 * 119.82194 * 0.02562 * 16 15 13 42 42 H 1.07999 * 119.78156 * 180.27963 * 17 16 15 43 43 H 1.08004 * 119.97008 * 179.71800 * 18 17 16 44 44 H 0.97008 * 119.99960 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.20840 * 359.95097 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7103 -1.2305 6 7 1.2732 -1.1826 -2.2670 7 1 0.3085 -1.1231 -2.3476 8 6 2.1184 -1.7468 -3.1565 9 7 3.3374 -1.6345 -2.7045 10 6 3.3149 -0.9965 -1.5249 11 6 4.5142 -0.6622 -0.6759 12 8 4.8650 -1.8109 0.1401 13 6 5.9230 -1.6765 0.9629 14 8 6.5362 -0.6285 0.9974 15 6 6.3384 -2.8043 1.8226 16 6 5.6293 -4.0106 1.7867 17 6 6.0156 -5.0722 2.5848 18 6 7.0950 -4.9513 3.4322 19 6 7.8171 -3.7443 3.4860 20 6 8.9261 -3.6175 4.3546 21 1 8.9894 -4.2293 5.2424 22 6 9.9412 -2.6993 4.0638 23 7 10.0601 -2.2172 2.8535 24 14 11.1266 -2.1620 5.4038 25 1 12.2983 -3.0741 5.4231 26 1 11.5834 -0.7751 5.1338 27 1 10.4405 -2.2097 6.7199 28 6 7.4302 -2.6660 2.6725 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.7509 1.9300 0.9310 33 1 3.1264 1.4438 -0.0886 34 1 1.6062 1.9813 -0.8424 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -0.2075 2.1392 38 1 1.8328 -2.2129 -4.0879 39 1 5.3547 -0.4038 -1.3199 40 1 4.2779 0.1835 -0.0301 41 1 4.7789 -4.1143 1.1292 42 1 5.4647 -6.0003 2.5465 43 1 7.3875 -5.7834 4.0554 44 1 10.7640 -1.5809 2.6518 45 1 7.9779 -1.7357 2.7067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822319681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:09 Heat of formation + Delta-G solvation = -23.697068 kcal Electronic energy + Delta-G solvation = -27693.571501 eV Core-core repulsion = 23869.283626 eV Total energy + Delta-G solvation = -3824.287875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.40898 -39.62238 -37.37332 -37.01303 -35.67752 -33.71285 -32.94562 -30.50362 -29.78118 -29.45135 -27.59438 -27.37084 -26.50329 -25.27443 -22.98428 -22.29260 -20.96140 -20.82372 -19.71899 -19.39054 -17.80815 -17.76936 -16.38608 -15.93640 -15.76663 -15.24860 -14.95620 -14.87656 -14.68670 -14.57088 -14.08908 -13.73874 -13.51987 -13.28302 -12.76535 -12.64073 -12.61811 -12.55331 -12.41915 -12.00733 -11.79064 -11.65166 -11.58446 -11.22997 -11.17317 -11.07262 -10.98969 -10.73819 -10.49422 -10.21632 -10.16692 -10.07652 -9.86182 -9.68188 -9.43682 -9.19886 -8.42316 -7.69385 -7.50957 -6.79076 -4.39857 1.80589 2.04451 2.73602 2.81618 2.91661 3.09171 3.11861 3.17575 3.65850 3.73308 3.93426 4.29076 4.48734 4.51246 4.62564 4.66325 4.96956 5.04666 5.10582 5.24692 5.38067 5.41643 5.54031 5.57896 5.63120 5.63785 5.74642 5.80821 5.85254 5.93833 5.97381 6.14790 6.17195 6.31648 6.46314 6.52448 6.68437 6.97779 7.00452 7.06821 7.20226 7.20758 7.35472 7.73021 7.80032 7.94386 7.96698 8.14364 8.47823 8.64196 8.80777 8.83137 10.16801 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.002870 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.444664 B = 9752.548772 C =10007.394173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.005 3.995 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.019 3.981 6 N -0.567 5.567 7 H 0.418 0.582 8 C 0.181 3.819 9 N -0.472 5.472 10 C 0.007 3.993 11 C 0.147 3.853 12 O -0.347 6.347 13 C 0.511 3.489 14 O -0.519 6.519 15 C -0.113 4.113 16 C -0.191 4.191 17 C -0.104 4.104 18 C -0.201 4.201 19 C 0.097 3.903 20 C -0.462 4.462 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.787 5.787 24 Si 0.909 3.091 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.088 4.088 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.209 0.791 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.470 5.301 -7.387 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.004 3.996 3 C -0.202 4.202 4 C -0.202 4.202 5 C -0.098 4.098 6 N -0.170 5.170 7 H 0.256 0.744 8 C -0.103 4.103 9 N -0.191 5.191 10 C -0.122 4.122 11 C 0.072 3.928 12 O -0.264 6.264 13 C 0.359 3.641 14 O -0.409 6.409 15 C -0.114 4.114 16 C -0.210 4.210 17 C -0.123 4.123 18 C -0.221 4.221 19 C 0.094 3.906 20 C -0.491 4.491 21 H 0.100 0.900 22 C -0.145 4.145 23 N -0.411 5.411 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.226 0.774 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.372 5.494 -7.953 19.880 hybrid contribution -0.612 0.533 0.475 0.941 sum -17.984 6.026 -7.478 20.388 Atomic orbital electron populations 1.21953 0.94136 1.02039 1.02478 1.19111 0.95299 0.94789 0.90422 1.22012 1.02156 0.93838 1.02195 1.22018 1.02915 1.00270 0.94986 1.20957 0.91311 1.05154 0.92349 1.43241 1.10556 1.45646 1.17587 0.74405 1.24938 0.84947 1.02730 0.97678 1.70159 1.21395 1.16971 1.10573 1.19849 0.92298 1.05319 0.94730 1.20947 0.93608 0.87079 0.91149 1.86676 1.47283 1.41331 1.51083 1.21874 0.76598 0.88147 0.77524 1.90756 1.53771 1.29842 1.66551 1.18833 1.00169 0.92058 1.00371 1.20572 1.02283 0.93757 1.04431 1.20503 0.97394 0.96957 0.97414 1.21180 1.00125 0.97241 1.03577 1.17525 0.92023 0.89760 0.91273 1.19534 1.02904 1.18708 1.07979 0.90019 1.25949 0.98296 0.94471 0.95789 1.69786 1.29061 1.23134 1.19122 0.86294 0.80018 0.78591 0.81764 1.19463 1.19977 1.18392 1.21618 0.93502 0.99982 0.95687 0.92364 0.92797 0.91211 0.91466 0.91553 0.92517 0.92076 0.91056 0.91833 0.77409 0.90412 0.89934 0.87934 0.88649 0.88404 0.90433 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.64 37.16 0.28 -0.74 16 2 C 0.01 0.05 0.75 -155.66 -0.12 -0.06 16 3 C -0.14 -1.35 8.35 37.16 0.31 -1.04 16 4 C -0.14 -1.70 8.24 37.16 0.31 -1.39 16 5 C 0.02 0.22 5.58 -81.60 -0.46 -0.23 16 6 N -0.57 -5.00 5.88 -10.30 -0.06 -5.06 16 7 H 0.42 2.14 8.11 -40.82 -0.33 1.81 16 8 C 0.18 1.88 13.04 -90.38 -1.18 0.70 16 9 N -0.47 -7.21 11.25 -10.88 -0.12 -7.33 16 10 C 0.01 0.10 6.55 -82.86 -0.54 -0.44 16 11 C 0.15 2.51 4.70 36.00 0.17 2.68 16 12 O -0.35 -7.01 8.47 -40.51 -0.34 -7.35 16 13 C 0.51 11.85 7.90 34.63 0.27 12.13 16 14 O -0.52 -12.90 16.12 -19.24 -0.31 -13.21 16 15 C -0.11 -2.79 5.87 -105.05 -0.62 -3.41 16 16 C -0.19 -4.34 9.62 -38.90 -0.37 -4.71 16 17 C -0.10 -2.31 10.01 -39.73 -0.40 -2.71 16 18 C -0.20 -4.83 9.78 -38.81 -0.38 -5.21 16 19 C 0.10 2.56 5.56 -106.87 -0.59 1.97 16 20 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 21 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 22 C 0.07 1.86 5.13 -17.35 -0.09 1.78 16 23 N -0.79 -20.87 11.03 55.55 0.61 -20.26 16 24 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 28 C -0.09 -2.37 8.23 -38.42 -0.32 -2.69 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.30 7.95 -51.93 -0.41 -0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.72 5.58 -51.93 -0.29 0.43 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.04 4.73 -51.93 -0.25 0.79 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.29 4.46 -51.93 -0.23 1.06 16 41 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 45 H 0.13 3.82 5.82 -52.49 -0.31 3.51 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.12 371.27 -9.71 -41.83 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.99 Total: 7.90 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -4.06 Total: -15.84 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.43 Total: -32.64 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.65 Total: -20.56 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.12 -9.71 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822319681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.137 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds