Wall clock time and date at job start Tue Mar 31 2020 15:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47066 * 120.00225 * 2 1 3 5 5 C 1.50700 * 109.46865 * 240.00378 * 2 1 3 6 6 N 1.36879 * 126.59183 * 5.70262 * 5 2 1 7 7 H 0.96996 * 126.39602 * 359.97438 * 6 5 2 8 8 C 1.35042 * 107.20623 * 179.97438 * 6 5 2 9 9 N 1.30498 * 108.69753 * 359.97438 * 8 6 5 10 10 C 1.34126 * 109.25693 * 359.76067 * 9 8 6 11 11 C 1.50698 * 125.98617 * 180.24762 * 10 9 8 12 12 O 1.45199 * 109.47275 * 276.17313 * 11 10 9 13 13 C 1.34705 * 117.00447 * 180.02562 * 12 11 10 14 14 O 1.21467 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.47767 * 120.00245 * 180.02562 * 13 12 11 16 16 C 1.39973 * 120.02787 * 359.71954 * 15 13 12 17 17 C 1.38319 * 120.34609 * 179.74420 * 16 15 13 18 18 C 1.37760 * 120.42134 * 0.56037 * 17 16 15 19 19 C 1.40751 * 120.05067 * 359.69747 * 18 17 16 20 20 C 1.41434 * 120.17314 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00360 * 334.46793 * 20 19 18 22 22 C 1.39937 * 119.99771 * 154.47478 * 20 19 18 23 23 N 1.30824 * 119.99956 * 342.14894 * 22 20 19 24 24 Si 1.86801 * 119.99996 * 162.15528 * 22 20 19 25 25 H 1.48497 * 109.47523 * 89.99673 * 24 22 20 26 26 H 1.48500 * 109.47305 * 209.99883 * 24 22 20 27 27 H 1.48498 * 109.47124 * 329.99414 * 24 22 20 28 28 C 1.39050 * 120.02942 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47237 * 59.99115 * 1 2 3 31 31 H 1.09003 * 109.46774 * 299.99658 * 1 2 3 32 32 H 1.09000 * 109.46777 * 64.95003 * 3 2 1 33 33 H 1.08993 * 109.47204 * 184.94726 * 3 2 1 34 34 H 1.09004 * 109.47177 * 304.95033 * 3 2 1 35 35 H 1.08996 * 109.47200 * 59.99925 * 4 2 1 36 36 H 1.08999 * 109.46784 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47054 * 299.99786 * 4 2 1 38 38 H 1.08003 * 125.64973 * 180.02562 * 8 6 5 39 39 H 1.08992 * 109.47868 * 36.17847 * 11 10 9 40 40 H 1.09005 * 109.46910 * 156.17950 * 11 10 9 41 41 H 1.07994 * 119.82194 * 0.02562 * 16 15 13 42 42 H 1.07999 * 119.78156 * 180.27963 * 17 16 15 43 43 H 1.08004 * 119.97008 * 179.71800 * 18 17 16 44 44 H 0.97008 * 119.99960 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.20840 * 359.95097 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7103 -1.2305 6 7 1.2732 -1.1826 -2.2670 7 1 0.3085 -1.1231 -2.3476 8 6 2.1184 -1.7468 -3.1565 9 7 3.3374 -1.6345 -2.7045 10 6 3.3149 -0.9965 -1.5249 11 6 4.5142 -0.6622 -0.6759 12 8 4.8650 -1.8109 0.1401 13 6 5.9230 -1.6765 0.9629 14 8 6.5362 -0.6285 0.9974 15 6 6.3384 -2.8043 1.8226 16 6 5.6293 -4.0106 1.7867 17 6 6.0156 -5.0722 2.5848 18 6 7.0950 -4.9513 3.4322 19 6 7.8171 -3.7443 3.4860 20 6 8.9261 -3.6175 4.3546 21 1 8.9894 -4.2293 5.2424 22 6 9.9412 -2.6993 4.0638 23 7 10.0601 -2.2172 2.8535 24 14 11.1266 -2.1620 5.4038 25 1 12.2983 -3.0741 5.4231 26 1 11.5834 -0.7751 5.1338 27 1 10.4405 -2.2097 6.7199 28 6 7.4302 -2.6660 2.6725 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.7509 1.9300 0.9310 33 1 3.1264 1.4438 -0.0886 34 1 1.6062 1.9813 -0.8424 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -0.2075 2.1392 38 1 1.8328 -2.2129 -4.0879 39 1 5.3547 -0.4038 -1.3199 40 1 4.2779 0.1835 -0.0301 41 1 4.7789 -4.1143 1.1292 42 1 5.4647 -6.0003 2.5465 43 1 7.3875 -5.7834 4.0554 44 1 10.7640 -1.5809 2.6518 45 1 7.9779 -1.7357 2.7067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822319681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:08 Heat of formation + Delta-G solvation = -40.377620 kcal Electronic energy + Delta-G solvation = -27694.294824 eV Core-core repulsion = 23869.283626 eV Total energy + Delta-G solvation = -3825.011198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.32445 -41.39381 -39.20348 -37.90802 -37.36611 -35.61505 -33.96052 -32.27327 -31.39106 -30.92347 -28.25683 -28.22382 -27.75838 -27.14360 -24.74524 -23.17888 -22.85822 -21.76775 -21.52192 -20.35516 -19.63316 -18.71312 -18.14129 -17.70149 -17.29959 -16.68432 -16.45983 -16.12789 -15.75744 -15.69065 -15.24385 -15.11146 -14.81342 -14.56316 -14.43128 -14.28966 -14.12774 -13.54108 -13.39532 -13.18573 -13.15736 -12.99872 -12.79305 -12.65737 -12.57949 -12.41608 -12.22138 -12.05329 -12.01490 -11.93180 -11.62556 -11.55337 -11.35999 -11.07411 -10.97723 -10.89214 -9.61693 -9.44827 -9.39344 -8.68128 -6.39397 0.13115 0.82374 0.96437 1.38447 1.46007 1.54676 1.57502 1.80288 2.14313 2.20075 2.36990 2.72875 3.45078 3.56470 3.62570 3.74334 3.87089 3.94276 3.98636 4.19156 4.28242 4.36216 4.42612 4.60066 4.61336 4.66560 4.71779 4.79550 4.84588 4.86134 4.94613 5.00063 5.04662 5.09517 5.12063 5.21340 5.26674 5.28955 5.32727 5.42077 5.44382 5.55207 5.81620 5.88907 6.00487 6.22213 6.52665 6.52870 6.81170 6.86911 6.89166 7.06533 8.29987 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.002870 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.444664 B = 9752.548772 C =10007.394173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.006 3.994 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.036 3.964 6 N -0.548 5.548 7 H 0.439 0.561 8 C 0.200 3.800 9 N -0.529 5.529 10 C -0.035 4.035 11 C 0.148 3.852 12 O -0.342 6.342 13 C 0.514 3.486 14 O -0.546 6.546 15 C -0.126 4.126 16 C -0.182 4.182 17 C -0.098 4.098 18 C -0.203 4.203 19 C 0.069 3.931 20 C -0.494 4.494 21 H 0.089 0.911 22 C 0.030 3.970 23 N -0.827 5.827 24 Si 0.984 3.016 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.253 1.253 28 C -0.120 4.120 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.117 0.883 44 H 0.288 0.712 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.533 4.540 -7.660 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.004 3.996 3 C -0.202 4.202 4 C -0.202 4.202 5 C -0.083 4.083 6 N -0.153 5.153 7 H 0.282 0.718 8 C -0.085 4.085 9 N -0.249 5.249 10 C -0.162 4.162 11 C 0.074 3.926 12 O -0.258 6.258 13 C 0.362 3.638 14 O -0.439 6.439 15 C -0.127 4.127 16 C -0.201 4.201 17 C -0.115 4.115 18 C -0.222 4.222 19 C 0.066 3.934 20 C -0.523 4.523 21 H 0.107 0.893 22 C -0.185 4.185 23 N -0.453 5.453 24 Si 0.805 3.195 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.176 1.176 28 C -0.140 4.140 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.269 0.731 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.491 4.715 -8.239 22.583 hybrid contribution 0.156 0.712 0.417 0.839 sum -20.335 5.426 -7.823 22.454 Atomic orbital electron populations 1.21931 0.91123 1.02946 1.04063 1.19182 0.97596 0.94308 0.88487 1.22015 1.00654 0.93931 1.03588 1.22008 1.00669 1.00587 0.96957 1.21080 0.90458 1.03698 0.93075 1.43168 1.11542 1.44321 1.16245 0.71797 1.25735 0.83695 1.00698 0.98366 1.70065 1.24428 1.19055 1.11313 1.19627 0.92649 1.08461 0.95466 1.21091 0.94244 0.86452 0.90832 1.86649 1.45644 1.42938 1.50583 1.21736 0.76982 0.87436 0.77624 1.90725 1.54878 1.30773 1.67487 1.19071 0.99968 0.93454 1.00236 1.20872 1.02093 0.92971 1.04165 1.20930 0.96635 0.98249 0.95724 1.21498 1.00117 0.96797 1.03824 1.17888 0.92970 0.90697 0.91812 1.19852 1.03610 1.20226 1.08614 0.89275 1.26887 0.99908 0.93887 0.97838 1.69883 1.30126 1.23970 1.21290 0.85169 0.77702 0.78139 0.78540 1.18229 1.19763 1.17641 1.21424 0.95009 0.99461 0.98108 0.91779 0.90813 0.90156 0.90109 0.93969 0.91057 0.92613 0.94503 0.90271 0.73080 0.92463 0.89055 0.85894 0.84264 0.86474 0.90160 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.64 71.98 0.55 -0.90 16 2 C 0.01 0.10 0.75 -52.93 -0.04 0.06 16 3 C -0.14 -2.51 8.35 71.98 0.60 -1.91 16 4 C -0.14 -3.32 8.24 71.98 0.59 -2.72 16 5 C 0.04 0.79 5.58 40.95 0.23 1.02 16 6 N -0.55 -7.90 5.88 -186.50 -1.10 -9.00 16 7 H 0.44 2.55 8.11 -92.71 -0.75 1.80 16 8 C 0.20 3.59 13.04 180.26 2.35 5.94 16 9 N -0.53 -15.86 11.25 -188.32 -2.12 -17.98 16 10 C -0.04 -1.07 6.55 41.39 0.27 -0.80 16 11 C 0.15 5.37 4.70 71.24 0.34 5.71 16 12 O -0.34 -14.45 8.47 -56.15 -0.48 -14.92 16 13 C 0.51 25.19 7.90 70.34 0.56 25.75 16 14 O -0.55 -29.14 16.12 19.94 0.32 -28.81 16 15 C -0.13 -6.46 5.87 -20.14 -0.12 -6.57 16 16 C -0.18 -8.16 9.62 22.71 0.22 -7.95 16 17 C -0.10 -4.13 10.01 22.18 0.22 -3.90 16 18 C -0.20 -9.61 9.78 22.77 0.22 -9.39 16 19 C 0.07 3.75 5.56 -21.32 -0.12 3.63 16 20 C -0.49 -26.68 9.05 23.47 0.21 -26.47 16 21 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 22 C 0.03 1.55 5.13 85.25 0.44 1.99 16 23 N -0.83 -46.17 11.03 21.82 0.24 -45.93 16 24 Si 0.98 39.26 29.60 68.60 2.03 41.29 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 27 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 28 C -0.12 -6.81 8.23 23.02 0.19 -6.62 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.48 7.95 -2.39 -0.02 0.46 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 0.94 5.58 -2.39 -0.01 0.92 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.10 4.73 -2.39 -0.01 1.09 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.09 3.09 4.46 -2.38 -0.01 3.08 16 41 H 0.12 4.99 7.59 -2.91 -0.02 4.97 16 42 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 44 H 0.29 14.78 8.30 -92.70 -0.77 14.01 16 45 H 0.10 6.44 5.82 -2.91 -0.02 6.43 16 Total: -1.00 -75.19 371.27 5.89 -69.30 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.28 Total: 29.19 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 6.71 Total: -23.14 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.97 Total: -72.91 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.15 Total: -43.73 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -75.19 5.89 -69.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822319681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.924 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds