Wall clock time and date at job start Tue Mar 31 2020 16:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.50699 * 109.47191 * 120.00479 * 2 1 3 5 5 H 1.07994 * 120.00491 * 114.23619 * 4 2 1 6 6 C 1.37884 * 119.99510 * 294.23186 * 4 2 1 7 7 N 1.31518 * 119.99849 * 209.34325 * 6 4 2 8 8 Si 1.86792 * 120.00175 * 29.35002 * 6 4 2 9 9 H 1.48501 * 109.47464 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.99840 * 8 6 4 11 11 H 1.48504 * 109.47262 * 59.99611 * 8 6 4 12 12 C 1.53004 * 109.46825 * 239.99967 * 2 1 3 13 13 N 1.46504 * 109.46770 * 60.00137 * 12 2 1 14 14 C 1.34776 * 119.99733 * 179.97438 * 13 12 2 15 15 O 1.21286 * 120.00190 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00196 * 179.97438 * 14 13 12 17 17 H 1.08994 * 115.56030 * 325.75721 * 16 14 13 18 18 C 1.53141 * 117.51519 * 111.57165 * 16 14 13 19 19 C 1.52340 * 117.51689 * 180.02562 * 16 14 13 20 20 C 1.50557 * 121.90925 * 141.32265 * 19 16 14 21 21 C 1.37678 * 133.31830 * 36.36330 * 20 19 16 22 22 C 1.38371 * 119.98426 * 179.97438 * 21 20 19 23 23 C 1.38302 * 119.83475 * 359.97438 * 22 21 20 24 24 C 1.37925 * 120.34718 * 359.97438 * 23 22 21 25 25 C 1.39089 * 105.97082 * 216.34247 * 20 19 16 26 26 N 1.39608 * 110.25346 * 359.97438 * 25 20 19 27 27 C 1.34607 * 112.22022 * 0.02562 * 26 25 20 28 28 O 1.21287 * 126.62110 * 180.02562 * 27 26 25 29 29 H 1.09008 * 109.46707 * 295.40898 * 1 2 3 30 30 H 1.08995 * 109.47150 * 55.40180 * 1 2 3 31 31 H 1.08998 * 109.47282 * 175.40926 * 1 2 3 32 32 H 1.08998 * 109.46902 * 185.31585 * 3 2 1 33 33 H 1.08994 * 109.47096 * 305.31196 * 3 2 1 34 34 H 1.08992 * 109.46772 * 65.31669 * 3 2 1 35 35 H 0.97006 * 119.99913 * 354.99730 * 7 6 4 36 36 H 1.08997 * 109.46899 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.47094 * 300.00462 * 12 2 1 38 38 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 39 39 H 1.09000 * 117.51621 * 214.88099 * 18 16 14 40 40 H 1.09001 * 117.51375 * 0.02562 * 18 16 14 41 41 H 1.08003 * 120.00856 * 359.96700 * 21 20 19 42 42 H 1.08004 * 120.07874 * 180.02562 * 22 21 20 43 43 H 1.07993 * 119.82395 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.90764 * 180.02562 * 24 23 22 45 45 H 0.97006 * 123.89445 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5743 -1.6396 1.1340 6 6 1.8001 -0.1742 2.4792 7 7 2.6478 -0.3986 3.4593 8 14 0.2812 0.8709 2.7791 9 1 0.2632 1.3240 4.1932 10 1 0.3083 2.0529 1.8805 11 1 -0.9359 0.0664 2.5021 12 6 2.0400 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4907 -3.6695 15 8 2.5748 -1.4769 -3.7809 16 6 1.3747 0.2193 -4.9000 17 1 0.3827 0.6627 -4.8147 18 6 2.4051 0.9499 -5.7659 19 6 1.7770 -0.3496 -6.2547 20 6 0.8225 -0.3840 -7.4186 21 6 -0.1578 0.4751 -7.8619 22 6 -0.8894 0.1641 -8.9944 23 6 -0.6326 -1.0102 -9.6784 24 6 0.3494 -1.8728 -9.2380 25 6 1.0896 -1.5681 -8.0976 26 7 2.1184 -2.2673 -7.4638 27 6 2.5769 -1.6220 -6.3751 28 8 3.4631 -1.9922 -5.6344 29 1 -0.3633 0.4410 0.9283 30 1 -0.3633 0.5835 -0.8459 31 1 -0.3634 -1.0243 -0.0822 32 1 3.1259 1.4440 -0.0952 33 1 1.6012 1.9831 -0.8385 34 1 1.7566 1.9281 0.9337 35 1 3.3972 -0.9997 3.3243 36 1 3.1299 -0.7209 -1.2495 37 1 1.6765 -1.7489 -1.2493 38 1 0.9942 0.7583 -2.3564 39 1 2.0909 1.8744 -6.2503 40 1 3.4464 0.9165 -5.4456 41 1 -0.3558 1.3915 -7.3257 42 1 -1.6585 0.8371 -9.3437 43 1 -1.2040 -1.2530 -10.5621 44 1 0.5442 -2.7877 -9.7778 45 1 2.4631 -3.1199 -7.7723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:39 Heat of formation + Delta-G solvation = 10.796315 kcal Electronic energy + Delta-G solvation = -27780.300874 eV Core-core repulsion = 23957.508744 eV Total energy + Delta-G solvation = -3822.792130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91848 -39.45521 -38.38574 -36.93604 -35.99999 -35.54950 -33.25229 -31.46202 -31.11838 -29.47757 -26.79507 -26.32493 -25.79110 -24.57364 -23.31251 -22.84589 -21.74914 -20.61826 -19.51679 -19.02499 -17.97857 -17.69707 -16.79240 -16.25441 -16.11338 -15.51881 -15.39792 -14.99253 -14.67780 -14.57391 -14.31269 -14.24839 -14.09625 -13.33658 -13.09342 -12.99441 -12.70544 -12.64560 -12.33736 -12.32503 -12.03080 -11.80234 -11.60952 -11.32331 -11.25544 -10.97160 -10.75167 -10.60032 -10.22964 -10.16924 -10.05080 -9.91722 -9.26423 -9.11078 -9.03496 -8.88147 -8.42756 -8.21135 -8.03073 -6.55094 -4.06812 0.81611 0.97754 2.23641 2.78053 2.89627 3.32045 3.37859 3.41020 3.49758 3.61015 3.84170 4.00909 4.06669 4.23874 4.43754 4.58643 4.63434 4.68650 4.97161 5.05769 5.12224 5.16075 5.17156 5.28042 5.36822 5.56682 5.65839 5.82461 5.85777 6.04634 6.09251 6.11962 6.14380 6.35421 6.40156 6.53316 6.57728 6.66341 6.68586 6.73514 6.77864 6.84633 7.02454 7.28936 7.49927 7.98192 8.03093 8.16516 8.35418 8.69723 8.89327 9.57781 10.85134 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002732 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.763037 B =10244.653117 C =10848.264814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 C -0.141 4.141 4 C -0.610 4.610 5 H 0.059 0.941 6 C 0.039 3.961 7 N -0.889 5.889 8 Si 1.059 2.941 9 H -0.300 1.300 10 H -0.276 1.276 11 H -0.287 1.287 12 C 0.146 3.854 13 N -0.718 5.718 14 C 0.516 3.484 15 O -0.508 6.508 16 C -0.134 4.134 17 H 0.134 0.866 18 C -0.099 4.099 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.064 4.064 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.147 4.147 25 C 0.159 3.841 26 N -0.669 5.669 27 C 0.551 3.449 28 O -0.433 6.433 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.271 0.729 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.395 0.605 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 4.383 -27.662 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 C -0.198 4.198 4 C -0.647 4.647 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.521 5.521 8 Si 0.892 3.108 9 H -0.228 1.228 10 H -0.204 1.204 11 H -0.215 1.215 12 C 0.023 3.977 13 N -0.370 5.370 14 C 0.300 3.700 15 O -0.383 6.383 16 C -0.156 4.156 17 H 0.152 0.848 18 C -0.137 4.137 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.082 4.082 22 C -0.165 4.165 23 C -0.102 4.102 24 C -0.168 4.168 25 C 0.061 3.939 26 N -0.313 5.313 27 C 0.336 3.664 28 O -0.300 6.300 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.230 0.770 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.692 4.391 -25.990 27.457 hybrid contribution 0.417 -1.136 -1.332 1.799 sum -7.275 3.256 -27.321 28.460 Atomic orbital electron populations 1.22355 0.99153 1.00375 0.98642 1.18636 0.91321 0.93063 0.93542 1.22221 1.00412 0.97625 0.99563 1.21618 1.41187 1.11367 0.90526 0.92330 1.25719 1.00014 0.98261 0.92825 1.70872 1.12183 1.31486 1.37574 0.84047 0.75974 0.76329 0.74442 1.22782 1.20393 1.21549 1.21504 0.98515 0.95502 0.82146 1.46230 1.53125 1.31847 1.05753 1.19543 0.81438 0.85218 0.83809 1.90930 1.36211 1.25143 1.85966 1.22257 1.01849 1.02731 0.88745 0.84787 1.22978 0.99275 0.92744 0.98670 1.20053 1.00777 0.96844 0.94588 1.18998 0.99350 0.96212 0.96599 1.20262 0.93512 0.98433 0.95998 1.21012 1.01193 0.98042 0.96278 1.20868 0.96266 0.93730 0.99355 1.20352 0.98410 1.01817 0.96220 1.18217 0.89927 0.91854 0.93920 1.43714 1.35596 1.24092 1.27919 1.19187 0.83215 0.84539 0.79417 1.90945 1.27890 1.69873 1.41257 0.93966 0.95446 0.93165 0.93580 0.95997 0.92561 0.91876 0.92244 0.92509 0.77039 0.86279 0.86670 0.85463 0.85328 0.85285 0.85653 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 7.74 37.16 0.29 -2.75 16 2 C 0.04 0.81 0.50 -155.66 -0.08 0.73 16 3 C -0.14 -2.96 7.90 37.16 0.29 -2.67 16 4 C -0.61 -16.72 8.42 -34.44 -0.29 -17.01 16 5 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 6 C 0.04 1.10 5.06 -17.82 -0.09 1.01 16 7 N -0.89 -26.83 13.70 55.43 0.76 -26.07 16 8 Si 1.06 25.07 23.53 -169.99 -4.00 21.07 16 9 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -5.93 5.73 56.52 0.32 -5.61 16 11 H -0.29 -6.46 6.69 56.52 0.38 -6.09 16 12 C 0.15 3.09 4.51 -4.04 -0.02 3.08 16 13 N -0.72 -12.25 5.02 -60.29 -0.30 -12.56 16 14 C 0.52 8.88 7.61 -10.99 -0.08 8.80 16 15 O -0.51 -11.01 12.36 -19.63 -0.24 -11.25 16 16 C -0.13 -1.64 6.07 -92.04 -0.56 -2.20 16 17 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.10 -1.02 9.99 -26.97 -0.27 -1.29 16 19 C -0.12 -1.46 2.42 -157.49 -0.38 -1.84 16 20 C -0.11 -1.11 6.12 -104.58 -0.64 -1.75 16 21 C -0.06 -0.49 10.03 -39.74 -0.40 -0.89 16 22 C -0.15 -0.95 10.06 -39.51 -0.40 -1.35 16 23 C -0.08 -0.54 10.02 -39.67 -0.40 -0.93 16 24 C -0.15 -1.13 10.07 -39.29 -0.40 -1.53 16 25 C 0.16 1.62 7.12 -83.60 -0.59 1.03 16 26 N -0.67 -7.73 5.90 -9.79 -0.06 -7.79 16 27 C 0.55 8.37 7.77 -11.02 -0.09 8.28 16 28 O -0.43 -8.47 14.48 -19.63 -0.28 -8.75 16 29 H 0.04 0.90 2.27 -51.92 -0.12 0.78 16 30 H 0.03 0.46 7.00 -51.93 -0.36 0.09 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.37 7.02 -51.93 -0.36 0.01 16 34 H 0.06 1.25 4.40 -51.93 -0.23 1.02 16 35 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.40 5.70 6.24 -40.82 -0.25 5.45 16 39 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.41 3.82 8.96 -40.82 -0.37 3.45 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -35.12 357.74 -8.85 -43.97 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.02 Total: 7.27 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -4.10 Total: -11.29 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.40 Total: -46.42 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.53 Total: -20.00 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.00 Total: 21.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.12 -8.85 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.767 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds