Wall clock time and date at job start Tue Mar 31 2020 16:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.50699 * 109.47191 * 120.00479 * 2 1 3 5 5 H 1.07994 * 120.00491 * 114.23619 * 4 2 1 6 6 C 1.37884 * 119.99510 * 294.23186 * 4 2 1 7 7 N 1.31518 * 119.99849 * 209.34325 * 6 4 2 8 8 Si 1.86792 * 120.00175 * 29.35002 * 6 4 2 9 9 H 1.48501 * 109.47464 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.99840 * 8 6 4 11 11 H 1.48504 * 109.47262 * 59.99611 * 8 6 4 12 12 C 1.53004 * 109.46825 * 239.99967 * 2 1 3 13 13 N 1.46504 * 109.46770 * 60.00137 * 12 2 1 14 14 C 1.34776 * 119.99733 * 179.97438 * 13 12 2 15 15 O 1.21286 * 120.00190 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00196 * 179.97438 * 14 13 12 17 17 H 1.08994 * 115.56030 * 325.75721 * 16 14 13 18 18 C 1.53141 * 117.51519 * 111.57165 * 16 14 13 19 19 C 1.52340 * 117.51689 * 180.02562 * 16 14 13 20 20 C 1.50557 * 121.90925 * 141.32265 * 19 16 14 21 21 C 1.37678 * 133.31830 * 36.36330 * 20 19 16 22 22 C 1.38371 * 119.98426 * 179.97438 * 21 20 19 23 23 C 1.38302 * 119.83475 * 359.97438 * 22 21 20 24 24 C 1.37925 * 120.34718 * 359.97438 * 23 22 21 25 25 C 1.39089 * 105.97082 * 216.34247 * 20 19 16 26 26 N 1.39608 * 110.25346 * 359.97438 * 25 20 19 27 27 C 1.34607 * 112.22022 * 0.02562 * 26 25 20 28 28 O 1.21287 * 126.62110 * 180.02562 * 27 26 25 29 29 H 1.09008 * 109.46707 * 295.40898 * 1 2 3 30 30 H 1.08995 * 109.47150 * 55.40180 * 1 2 3 31 31 H 1.08998 * 109.47282 * 175.40926 * 1 2 3 32 32 H 1.08998 * 109.46902 * 185.31585 * 3 2 1 33 33 H 1.08994 * 109.47096 * 305.31196 * 3 2 1 34 34 H 1.08992 * 109.46772 * 65.31669 * 3 2 1 35 35 H 0.97006 * 119.99913 * 354.99730 * 7 6 4 36 36 H 1.08997 * 109.46899 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.47094 * 300.00462 * 12 2 1 38 38 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 39 39 H 1.09000 * 117.51621 * 214.88099 * 18 16 14 40 40 H 1.09001 * 117.51375 * 0.02562 * 18 16 14 41 41 H 1.08003 * 120.00856 * 359.96700 * 21 20 19 42 42 H 1.08004 * 120.07874 * 180.02562 * 22 21 20 43 43 H 1.07993 * 119.82395 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.90764 * 180.02562 * 24 23 22 45 45 H 0.97006 * 123.89445 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5743 -1.6396 1.1340 6 6 1.8001 -0.1742 2.4792 7 7 2.6478 -0.3986 3.4593 8 14 0.2812 0.8709 2.7791 9 1 0.2632 1.3240 4.1932 10 1 0.3083 2.0529 1.8805 11 1 -0.9359 0.0664 2.5021 12 6 2.0400 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4907 -3.6695 15 8 2.5748 -1.4769 -3.7809 16 6 1.3747 0.2193 -4.9000 17 1 0.3827 0.6627 -4.8147 18 6 2.4051 0.9499 -5.7659 19 6 1.7770 -0.3496 -6.2547 20 6 0.8225 -0.3840 -7.4186 21 6 -0.1578 0.4751 -7.8619 22 6 -0.8894 0.1641 -8.9944 23 6 -0.6326 -1.0102 -9.6784 24 6 0.3494 -1.8728 -9.2380 25 6 1.0896 -1.5681 -8.0976 26 7 2.1184 -2.2673 -7.4638 27 6 2.5769 -1.6220 -6.3751 28 8 3.4631 -1.9922 -5.6344 29 1 -0.3633 0.4410 0.9283 30 1 -0.3633 0.5835 -0.8459 31 1 -0.3634 -1.0243 -0.0822 32 1 3.1259 1.4440 -0.0952 33 1 1.6012 1.9831 -0.8385 34 1 1.7566 1.9281 0.9337 35 1 3.3972 -0.9997 3.3243 36 1 3.1299 -0.7209 -1.2495 37 1 1.6765 -1.7489 -1.2493 38 1 0.9942 0.7583 -2.3564 39 1 2.0909 1.8744 -6.2503 40 1 3.4464 0.9165 -5.4456 41 1 -0.3558 1.3915 -7.3257 42 1 -1.6585 0.8371 -9.3437 43 1 -1.2040 -1.2530 -10.5621 44 1 0.5442 -2.7877 -9.7778 45 1 2.4631 -3.1199 -7.7723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:38 Heat of formation + Delta-G solvation = -14.204024 kcal Electronic energy + Delta-G solvation = -27781.384970 eV Core-core repulsion = 23957.508744 eV Total energy + Delta-G solvation = -3823.876226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.78294 -40.74153 -39.33382 -38.48899 -37.12911 -36.46149 -35.03888 -33.37400 -31.74237 -30.14657 -28.21085 -27.97220 -26.87608 -26.46534 -24.61344 -23.47810 -22.47684 -21.71831 -21.02418 -20.51256 -19.01502 -18.75106 -18.46293 -17.35044 -17.01991 -16.79513 -16.48906 -16.37958 -16.22589 -15.69060 -15.32812 -15.15367 -14.77547 -14.61522 -14.58463 -14.43681 -14.18631 -14.00792 -13.78990 -13.58995 -13.28959 -13.04579 -12.88972 -12.46623 -12.19366 -12.10831 -12.01740 -11.87151 -11.78363 -11.69122 -11.58216 -11.34871 -11.01541 -10.66675 -10.54173 -10.20182 -9.99459 -9.70107 -8.94445 -8.81322 -6.33235 0.13988 0.42733 1.29095 1.43645 1.53232 1.65030 1.75894 1.98042 2.16581 2.47659 2.76024 2.99984 3.00602 3.13963 3.28417 3.33932 3.73102 3.91750 4.04243 4.11802 4.24233 4.27297 4.38066 4.44047 4.47589 4.59299 4.62624 4.74401 4.77816 4.81563 4.84440 4.88188 4.93410 5.07069 5.09528 5.15661 5.21663 5.45863 5.51729 5.54189 5.62807 5.70162 5.78819 5.87054 5.99967 6.13061 6.16306 6.56177 6.65749 7.03071 7.38961 7.41628 8.57201 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002732 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.763037 B =10244.653117 C =10848.264814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.034 3.966 3 C -0.138 4.138 4 C -0.619 4.619 5 H 0.006 0.994 6 C -0.011 4.011 7 N -0.925 5.925 8 Si 1.096 2.904 9 H -0.311 1.311 10 H -0.228 1.228 11 H -0.265 1.265 12 C 0.163 3.837 13 N -0.704 5.704 14 C 0.508 3.492 15 O -0.558 6.558 16 C -0.131 4.131 17 H 0.180 0.820 18 C -0.078 4.078 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.063 4.063 22 C -0.138 4.138 23 C -0.084 4.084 24 C -0.147 4.147 25 C 0.123 3.877 26 N -0.665 5.665 27 C 0.534 3.466 28 O -0.499 6.499 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.024 0.976 37 H 0.029 0.971 38 H 0.414 0.586 39 H 0.168 0.832 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.140 0.860 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 8.348 -31.346 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 C -0.195 4.195 4 C -0.656 4.656 5 H 0.025 0.975 6 C -0.211 4.211 7 N -0.559 5.559 8 Si 0.921 3.079 9 H -0.240 1.240 10 H -0.153 1.153 11 H -0.192 1.192 12 C 0.039 3.961 13 N -0.358 5.358 14 C 0.294 3.706 15 O -0.436 6.436 16 C -0.152 4.152 17 H 0.197 0.803 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.082 4.082 22 C -0.156 4.156 23 C -0.102 4.102 24 C -0.168 4.168 25 C 0.027 3.973 26 N -0.309 5.309 27 C 0.321 3.679 28 O -0.372 6.372 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.252 0.748 39 H 0.186 0.814 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.318 8.383 -29.769 33.290 hybrid contribution 1.890 -2.519 -0.352 3.169 sum -10.428 5.864 -30.121 32.410 Atomic orbital electron populations 1.22265 0.96375 1.01034 1.00698 1.18574 0.93444 0.93546 0.91164 1.22134 0.99666 0.96457 1.01253 1.21877 1.40335 1.09937 0.93451 0.97518 1.27276 1.01876 0.99529 0.92407 1.71024 1.12997 1.33094 1.38779 0.83664 0.72670 0.76844 0.74746 1.24011 1.15304 1.19177 1.20942 0.96379 0.94697 0.84106 1.45926 1.53255 1.32097 1.04477 1.20509 0.80297 0.84702 0.85077 1.90947 1.38303 1.27632 1.86737 1.22260 1.04166 1.02973 0.85807 0.80318 1.23187 0.97797 0.93656 0.96898 1.20083 1.01470 0.96287 0.95480 1.19034 1.00148 0.97013 0.95884 1.20618 0.92326 0.98815 0.96396 1.21467 1.00869 0.98077 0.95237 1.21300 0.95513 0.93328 1.00039 1.20663 0.98090 1.02735 0.95294 1.18563 0.90691 0.92525 0.95543 1.43651 1.35833 1.24217 1.27214 1.19852 0.82790 0.85924 0.79362 1.90900 1.30842 1.71716 1.43726 0.94072 0.90497 0.93972 0.95390 0.90985 0.93251 0.93929 0.95722 0.95233 0.74815 0.81422 0.88889 0.82605 0.82266 0.82428 0.84260 0.74483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 7.74 71.98 0.56 -4.97 16 2 C 0.03 1.52 0.50 -52.92 -0.03 1.49 16 3 C -0.14 -5.46 7.90 71.98 0.57 -4.90 16 4 C -0.62 -35.50 8.42 25.60 0.22 -35.29 16 5 H 0.01 0.42 7.99 -2.91 -0.02 0.40 16 6 C -0.01 -0.65 5.06 84.66 0.43 -0.22 16 7 N -0.92 -58.53 13.70 21.45 0.29 -58.24 16 8 Si 1.10 48.97 23.53 68.60 1.61 50.58 16 9 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 10 H -0.23 -8.50 5.73 99.48 0.57 -7.93 16 11 H -0.27 -10.87 6.69 99.48 0.67 -10.20 16 12 C 0.16 7.17 4.51 86.38 0.39 7.55 16 13 N -0.70 -23.05 5.02 -463.05 -2.32 -25.37 16 14 C 0.51 17.34 7.61 87.66 0.67 18.01 16 15 O -0.56 -25.69 12.36 21.03 0.26 -25.43 16 16 C -0.13 -2.83 6.07 -11.71 -0.07 -2.90 16 17 H 0.18 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.08 -1.39 9.99 30.44 0.30 -1.09 16 19 C -0.13 -2.99 2.42 -54.12 -0.13 -3.12 16 20 C -0.12 -2.07 6.12 -19.84 -0.12 -2.19 16 21 C -0.06 -0.65 10.03 22.17 0.22 -0.43 16 22 C -0.14 -1.03 10.06 22.32 0.22 -0.80 16 23 C -0.08 -0.70 10.02 22.21 0.22 -0.47 16 24 C -0.15 -1.88 10.07 22.46 0.23 -1.65 16 25 C 0.12 2.35 7.12 38.37 0.27 2.62 16 26 N -0.66 -15.97 5.90 -303.38 -1.79 -17.76 16 27 C 0.53 17.02 7.77 87.71 0.68 17.70 16 28 O -0.50 -21.36 14.48 21.03 0.30 -21.05 16 29 H 0.04 1.58 2.27 -2.38 -0.01 1.57 16 30 H 0.08 2.13 7.00 -2.39 -0.02 2.12 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.12 7.02 -2.39 -0.02 2.10 16 34 H 0.05 2.03 4.40 -2.39 -0.01 2.02 16 35 H 0.25 16.35 8.73 -92.70 -0.81 15.54 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 10.14 6.24 -92.71 -0.58 9.56 16 39 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 43 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.42 8.44 8.96 -92.70 -0.83 7.60 16 Total: -1.00 -87.84 357.74 2.41 -85.43 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.58 Total: 22.50 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.63 Total: -10.66 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -3.82 Total: -101.38 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: 0.56 Total: -46.48 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.61 Total: 50.58 kcal Total: -87.84 2.41 -85.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.224 kcal (2) G-P(sol) polarization free energy of solvation -87.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds