Wall clock time and date at job start Tue Mar 31 2020 16:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.50691 * 109.47027 * 120.00618 * 2 1 3 5 5 H 1.07997 * 120.00196 * 124.96967 * 4 2 1 6 6 C 1.37880 * 119.99937 * 304.95827 * 4 2 1 7 7 N 1.31515 * 119.99867 * 351.57706 * 6 4 2 8 8 Si 1.86798 * 120.00064 * 171.56854 * 6 4 2 9 9 H 1.48507 * 109.46886 * 90.00444 * 8 6 4 10 10 H 1.48502 * 109.47306 * 209.99953 * 8 6 4 11 11 H 1.48500 * 109.47335 * 330.00612 * 8 6 4 12 12 C 1.53007 * 109.46595 * 240.00217 * 2 1 3 13 13 N 1.46502 * 109.47080 * 60.00513 * 12 2 1 14 14 C 1.34779 * 119.99573 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99822 * 179.97438 * 14 13 12 17 17 H 1.09007 * 115.55745 * 62.11860 * 16 14 13 18 18 C 1.53127 * 117.51806 * 207.87030 * 16 14 13 19 19 C 1.52327 * 117.51483 * 276.37374 * 16 14 13 20 20 C 1.50545 * 121.92929 * 3.78084 * 19 16 14 21 21 C 1.37679 * 133.33461 * 323.75624 * 20 19 16 22 22 C 1.38369 * 119.99691 * 179.97438 * 21 20 19 23 23 C 1.38299 * 119.83486 * 0.02562 * 22 21 20 24 24 C 1.37935 * 120.34561 * 0.03752 * 23 22 21 25 25 C 1.39096 * 105.97419 * 143.71617 * 20 19 16 26 26 N 1.39617 * 110.25116 * 359.97438 * 25 20 19 27 27 C 1.34599 * 112.21969 * 359.97438 * 26 25 20 28 28 O 1.21289 * 126.62295 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47031 * 292.91595 * 1 2 3 30 30 H 1.08999 * 109.47135 * 52.91231 * 1 2 3 31 31 H 1.08999 * 109.47329 * 172.91160 * 1 2 3 32 32 H 1.09004 * 109.46568 * 187.36807 * 3 2 1 33 33 H 1.08995 * 109.47513 * 307.36480 * 3 2 1 34 34 H 1.08997 * 109.47123 * 67.36978 * 3 2 1 35 35 H 0.97000 * 120.00454 * 5.73118 * 7 6 4 36 36 H 1.08997 * 109.46491 * 179.97438 * 12 2 1 37 37 H 1.08999 * 109.47208 * 299.99831 * 12 2 1 38 38 H 0.96999 * 120.00106 * 359.97438 * 13 12 2 39 39 H 1.08999 * 117.51753 * 214.88120 * 18 16 14 40 40 H 1.09004 * 117.51345 * 359.97438 * 18 16 14 41 41 H 1.08005 * 119.99959 * 359.94818 * 21 20 19 42 42 H 1.08001 * 120.08664 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.83274 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.91087 * 180.02562 * 24 23 22 45 45 H 0.96999 * 123.89143 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.7177 -1.5395 1.1332 6 6 1.6171 -0.3021 2.4801 7 7 0.9184 0.8043 2.6118 8 14 2.0466 -1.3204 3.9860 9 1 3.3453 -0.8606 4.5404 10 1 0.9854 -1.1587 5.0121 11 1 2.1508 -2.7513 3.6028 12 6 2.0400 -0.7213 -1.2494 13 7 1.5516 -0.0305 -2.4455 14 6 1.8776 -0.4907 -3.6696 15 8 2.5755 -1.4763 -3.7809 16 6 1.3749 0.2195 -4.9001 17 1 1.7104 1.2499 -5.0184 18 6 1.1872 -0.6139 -6.1709 19 6 -0.0264 -0.1248 -5.3882 20 6 -0.9221 -1.0711 -4.6340 21 6 -0.6887 -2.2207 -3.9133 22 6 -1.7432 -2.8896 -3.3173 23 6 -3.0302 -2.4006 -3.4482 24 6 -3.2684 -1.2499 -4.1706 25 6 -2.2119 -0.5692 -4.7719 26 7 -2.1971 0.5973 -5.5391 27 6 -0.9552 0.9276 -5.9391 28 8 -0.6433 1.8864 -6.6134 29 1 -0.3633 0.4002 0.9466 30 1 -0.3633 0.6197 -0.8198 31 1 -0.3634 -1.0198 -0.1268 32 1 3.1221 1.4453 -0.1318 33 1 1.5732 1.9930 -0.8167 34 1 1.7883 1.9169 0.9485 35 1 0.6240 1.2887 1.8247 36 1 3.1299 -0.7209 -1.2496 37 1 1.6766 -1.7489 -1.2494 38 1 0.9938 0.7580 -2.3564 39 1 1.3986 -0.1315 -7.1252 40 1 1.4278 -1.6756 -6.1169 41 1 0.3174 -2.6007 -3.8135 42 1 -1.5618 -3.7918 -2.7519 43 1 -3.8533 -2.9230 -2.9834 44 1 -4.2762 -0.8741 -4.2680 45 1 -2.9904 1.1109 -5.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:45 Heat of formation + Delta-G solvation = -3.790046 kcal Electronic energy + Delta-G solvation = -28735.991587 eV Core-core repulsion = 24912.566945 eV Total energy + Delta-G solvation = -3823.424642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98988 -39.50292 -38.62120 -37.09832 -36.09039 -35.70682 -33.59783 -31.01139 -30.58053 -29.41021 -26.69813 -26.07812 -25.95805 -24.95406 -23.09603 -22.78566 -21.76589 -20.45707 -19.83603 -18.93570 -18.10220 -17.58232 -17.03817 -16.42021 -15.87019 -15.77233 -15.51138 -15.34007 -14.47715 -14.42979 -14.11510 -13.94949 -13.76806 -13.27175 -13.20511 -12.91216 -12.81863 -12.65332 -12.31370 -12.20918 -11.59607 -11.49639 -11.31743 -11.29822 -11.02910 -10.96524 -10.79725 -10.66098 -10.62411 -10.37351 -10.13390 -9.92021 -9.69957 -9.54142 -8.94220 -8.60071 -8.52721 -8.22541 -8.21463 -6.29002 -4.13389 0.88140 1.16026 2.04786 2.60995 2.87669 3.29559 3.41186 3.44387 3.55806 3.59813 3.77914 3.90754 4.11878 4.19477 4.48727 4.61883 4.72276 4.91525 5.04904 5.12065 5.27060 5.29623 5.31808 5.38811 5.47630 5.74304 5.81290 5.90432 5.96139 6.12181 6.22701 6.22911 6.35084 6.41511 6.52236 6.54247 6.56033 6.67530 6.75816 6.80632 6.82954 7.04794 7.06011 7.46688 7.62348 7.69585 7.88761 8.15558 8.37183 8.50149 8.81081 9.57088 10.97006 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.003852 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.927741 B = 7267.005551 C = 7884.705170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 C -0.145 4.145 4 C -0.586 4.586 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.916 5.916 8 Si 1.066 2.934 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.288 1.288 12 C 0.141 3.859 13 N -0.707 5.707 14 C 0.538 3.462 15 O -0.542 6.542 16 C -0.133 4.133 17 H 0.141 0.859 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.056 4.056 22 C -0.131 4.131 23 C -0.083 4.083 24 C -0.139 4.139 25 C 0.141 3.859 26 N -0.656 5.656 27 C 0.565 3.435 28 O -0.499 6.499 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.014 0.986 34 H 0.071 0.929 35 H 0.281 0.719 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.398 0.602 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 -3.361 -15.482 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 C -0.203 4.203 4 C -0.624 4.624 5 H 0.070 0.930 6 C -0.177 4.177 7 N -0.557 5.557 8 Si 0.895 3.105 9 H -0.215 1.215 10 H -0.211 1.211 11 H -0.214 1.214 12 C 0.019 3.981 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.421 6.421 16 C -0.154 4.154 17 H 0.158 0.842 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.101 4.101 24 C -0.160 4.160 25 C 0.045 3.955 26 N -0.299 5.299 27 C 0.352 3.648 28 O -0.373 6.373 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.232 0.768 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.596 -3.546 -14.270 16.551 hybrid contribution -0.688 0.836 -1.621 1.950 sum -8.284 -2.710 -15.892 18.125 Atomic orbital electron populations 1.22004 0.98131 0.99354 1.00536 1.18518 0.92342 0.92613 0.92379 1.22095 0.99292 0.98461 1.00450 1.21737 1.30677 1.18663 0.91363 0.92968 1.25650 0.94880 0.96341 1.00836 1.70844 1.36240 1.13928 1.34651 0.83589 0.76389 0.75179 0.75364 1.21548 1.21067 1.21428 1.21637 0.98190 0.95703 0.82605 1.46258 1.51881 1.31704 1.05806 1.19296 0.80548 0.84192 0.83759 1.90689 1.38510 1.26196 1.86688 1.22341 0.94275 1.02746 0.96061 0.84183 1.22975 0.92874 1.01962 0.94851 1.20209 0.89459 0.98686 1.05350 1.18877 0.91916 0.97211 1.02713 1.20450 1.00264 0.92628 0.94138 1.21103 0.92192 1.00958 1.00700 1.20904 0.97360 0.94905 0.96941 1.20311 0.97140 0.97059 1.01474 1.18116 0.95190 0.87481 0.94759 1.43496 1.10356 1.25330 1.50676 1.19313 0.82652 0.84370 0.78433 1.90800 1.79618 1.29179 1.37724 0.90979 0.96692 0.94389 0.94474 0.96702 0.91064 0.90292 0.92463 0.92338 0.76754 0.86386 0.86052 0.85073 0.85083 0.85081 0.85636 0.74657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 7.85 37.16 0.29 -2.79 16 2 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 3 C -0.14 -3.18 7.91 37.16 0.29 -2.88 16 4 C -0.59 -15.21 8.00 -34.44 -0.28 -15.49 16 5 H 0.05 1.38 7.76 -52.49 -0.41 0.97 16 6 C 0.03 0.72 5.07 -17.82 -0.09 0.63 16 7 N -0.92 -25.44 12.17 55.43 0.67 -24.77 16 8 Si 1.07 24.06 29.91 -169.99 -5.08 18.98 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.14 2.85 4.50 -4.04 -0.02 2.84 16 13 N -0.71 -12.00 5.04 -60.29 -0.30 -12.30 16 14 C 0.54 8.71 5.61 -10.98 -0.06 8.64 16 15 O -0.54 -10.28 16.06 5.56 0.09 -10.20 16 16 C -0.13 -1.73 6.04 -92.05 -0.56 -2.29 16 17 H 0.14 1.66 8.14 -51.93 -0.42 1.24 16 18 C -0.09 -1.01 9.81 -26.94 -0.26 -1.27 16 19 C -0.13 -1.66 2.42 -157.46 -0.38 -2.04 16 20 C -0.10 -1.33 5.73 -104.58 -0.60 -1.92 16 21 C -0.06 -0.73 9.26 -39.74 -0.37 -1.10 16 22 C -0.13 -1.48 10.06 -39.51 -0.40 -1.88 16 23 C -0.08 -0.81 10.02 -39.67 -0.40 -1.21 16 24 C -0.14 -1.35 10.07 -39.29 -0.40 -1.75 16 25 C 0.14 1.60 7.12 -83.59 -0.59 1.00 16 26 N -0.66 -6.93 5.90 -9.79 -0.06 -6.99 16 27 C 0.56 7.23 8.47 -11.02 -0.09 7.13 16 28 O -0.50 -7.51 18.03 5.55 0.10 -7.41 16 29 H 0.07 1.74 5.16 -51.93 -0.27 1.47 16 30 H 0.01 0.28 7.04 -51.93 -0.37 -0.09 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.01 0.27 7.05 -51.93 -0.37 -0.09 16 34 H 0.07 1.73 5.30 -51.93 -0.28 1.46 16 35 H 0.28 7.56 3.59 -40.82 -0.15 7.41 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.40 6.42 6.29 -40.82 -0.26 6.16 16 39 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.12 1.37 7.94 -51.93 -0.41 0.96 16 41 H 0.13 1.89 6.79 -52.48 -0.36 1.53 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.41 3.29 8.96 -40.82 -0.37 2.93 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -30.74 365.78 -8.88 -39.62 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.82 Total: 11.06 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.99 Total: -13.51 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.31 Total: -44.05 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.19 Total: -17.60 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.74 -8.88 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.828 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds