Wall clock time and date at job start Tue Mar 31 2020 16:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.50691 * 109.47027 * 120.00618 * 2 1 3 5 5 H 1.07997 * 120.00196 * 124.96967 * 4 2 1 6 6 C 1.37880 * 119.99937 * 304.95827 * 4 2 1 7 7 N 1.31515 * 119.99867 * 351.57706 * 6 4 2 8 8 Si 1.86798 * 120.00064 * 171.56854 * 6 4 2 9 9 H 1.48507 * 109.46886 * 90.00444 * 8 6 4 10 10 H 1.48502 * 109.47306 * 209.99953 * 8 6 4 11 11 H 1.48500 * 109.47335 * 330.00612 * 8 6 4 12 12 C 1.53007 * 109.46595 * 240.00217 * 2 1 3 13 13 N 1.46502 * 109.47080 * 60.00513 * 12 2 1 14 14 C 1.34779 * 119.99573 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99822 * 179.97438 * 14 13 12 17 17 H 1.09007 * 115.55745 * 62.11860 * 16 14 13 18 18 C 1.53127 * 117.51806 * 207.87030 * 16 14 13 19 19 C 1.52327 * 117.51483 * 276.37374 * 16 14 13 20 20 C 1.50545 * 121.92929 * 3.78084 * 19 16 14 21 21 C 1.37679 * 133.33461 * 323.75624 * 20 19 16 22 22 C 1.38369 * 119.99691 * 179.97438 * 21 20 19 23 23 C 1.38299 * 119.83486 * 0.02562 * 22 21 20 24 24 C 1.37935 * 120.34561 * 0.03752 * 23 22 21 25 25 C 1.39096 * 105.97419 * 143.71617 * 20 19 16 26 26 N 1.39617 * 110.25116 * 359.97438 * 25 20 19 27 27 C 1.34599 * 112.21969 * 359.97438 * 26 25 20 28 28 O 1.21289 * 126.62295 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47031 * 292.91595 * 1 2 3 30 30 H 1.08999 * 109.47135 * 52.91231 * 1 2 3 31 31 H 1.08999 * 109.47329 * 172.91160 * 1 2 3 32 32 H 1.09004 * 109.46568 * 187.36807 * 3 2 1 33 33 H 1.08995 * 109.47513 * 307.36480 * 3 2 1 34 34 H 1.08997 * 109.47123 * 67.36978 * 3 2 1 35 35 H 0.97000 * 120.00454 * 5.73118 * 7 6 4 36 36 H 1.08997 * 109.46491 * 179.97438 * 12 2 1 37 37 H 1.08999 * 109.47208 * 299.99831 * 12 2 1 38 38 H 0.96999 * 120.00106 * 359.97438 * 13 12 2 39 39 H 1.08999 * 117.51753 * 214.88120 * 18 16 14 40 40 H 1.09004 * 117.51345 * 359.97438 * 18 16 14 41 41 H 1.08005 * 119.99959 * 359.94818 * 21 20 19 42 42 H 1.08001 * 120.08664 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.83274 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.91087 * 180.02562 * 24 23 22 45 45 H 0.96999 * 123.89143 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.7177 -1.5395 1.1332 6 6 1.6171 -0.3021 2.4801 7 7 0.9184 0.8043 2.6118 8 14 2.0466 -1.3204 3.9860 9 1 3.3453 -0.8606 4.5404 10 1 0.9854 -1.1587 5.0121 11 1 2.1508 -2.7513 3.6028 12 6 2.0400 -0.7213 -1.2494 13 7 1.5516 -0.0305 -2.4455 14 6 1.8776 -0.4907 -3.6696 15 8 2.5755 -1.4763 -3.7809 16 6 1.3749 0.2195 -4.9001 17 1 1.7104 1.2499 -5.0184 18 6 1.1872 -0.6139 -6.1709 19 6 -0.0264 -0.1248 -5.3882 20 6 -0.9221 -1.0711 -4.6340 21 6 -0.6887 -2.2207 -3.9133 22 6 -1.7432 -2.8896 -3.3173 23 6 -3.0302 -2.4006 -3.4482 24 6 -3.2684 -1.2499 -4.1706 25 6 -2.2119 -0.5692 -4.7719 26 7 -2.1971 0.5973 -5.5391 27 6 -0.9552 0.9276 -5.9391 28 8 -0.6433 1.8864 -6.6134 29 1 -0.3633 0.4002 0.9466 30 1 -0.3633 0.6197 -0.8198 31 1 -0.3634 -1.0198 -0.1268 32 1 3.1221 1.4453 -0.1318 33 1 1.5732 1.9930 -0.8167 34 1 1.7883 1.9169 0.9485 35 1 0.6240 1.2887 1.8247 36 1 3.1299 -0.7209 -1.2496 37 1 1.6766 -1.7489 -1.2494 38 1 0.9938 0.7580 -2.3564 39 1 1.3986 -0.1315 -7.1252 40 1 1.4278 -1.6756 -6.1169 41 1 0.3174 -2.6007 -3.8135 42 1 -1.5618 -3.7918 -2.7519 43 1 -3.8533 -2.9230 -2.9834 44 1 -4.2762 -0.8741 -4.2680 45 1 -2.9904 1.1109 -5.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:44 Heat of formation + Delta-G solvation = -22.136774 kcal Electronic energy + Delta-G solvation = -28736.787161 eV Core-core repulsion = 24912.566945 eV Total energy + Delta-G solvation = -3824.220216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.93619 -40.84339 -39.55259 -38.73510 -37.23169 -36.64465 -35.25243 -32.43271 -31.84697 -30.27436 -28.17763 -27.87387 -27.27953 -26.55494 -24.45915 -23.65497 -22.65073 -21.58048 -21.00577 -20.74648 -19.24692 -18.73569 -18.30097 -17.74425 -17.01434 -16.94270 -16.59736 -16.48782 -15.76998 -15.62827 -15.51823 -15.30700 -14.89495 -14.58579 -14.54581 -14.45693 -14.11532 -14.06568 -13.40214 -13.35341 -13.19701 -13.08417 -12.76131 -12.53570 -12.42198 -12.36950 -12.25678 -11.93321 -11.91050 -11.73660 -11.70390 -11.45763 -11.33323 -11.00874 -10.51955 -10.22398 -10.05064 -9.80813 -9.08930 -8.36644 -6.22200 -0.02554 0.30052 1.08013 1.53056 1.57887 1.64175 1.81932 1.84314 2.07321 2.58123 2.62632 2.85071 2.92763 3.16082 3.23974 3.26827 3.62518 3.78624 3.89395 4.13165 4.20126 4.29838 4.36159 4.37374 4.47124 4.47633 4.54538 4.62858 4.81065 4.81678 4.83561 4.89246 4.96207 4.98263 5.07326 5.15849 5.20458 5.37613 5.39750 5.48642 5.55932 5.64106 5.68236 5.81929 5.98297 6.18271 6.33713 6.49994 6.77240 6.81800 7.14816 7.53768 8.90847 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.003852 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.927741 B = 7267.005551 C = 7884.705170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 C -0.135 4.135 4 C -0.600 4.600 5 H 0.039 0.961 6 C -0.014 4.014 7 N -0.938 5.938 8 Si 1.104 2.896 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.160 3.840 13 N -0.702 5.702 14 C 0.543 3.457 15 O -0.572 6.572 16 C -0.139 4.139 17 H 0.156 0.844 18 C -0.077 4.077 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.075 4.075 22 C -0.141 4.141 23 C -0.080 4.080 24 C -0.130 4.130 25 C 0.133 3.867 26 N -0.642 5.642 27 C 0.566 3.434 28 O -0.524 6.524 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.278 0.722 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.404 0.596 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -3.293 -16.449 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.036 3.964 3 C -0.193 4.193 4 C -0.639 4.639 5 H 0.057 0.943 6 C -0.213 4.213 7 N -0.579 5.579 8 Si 0.928 3.072 9 H -0.208 1.208 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.036 3.964 13 N -0.352 5.352 14 C 0.330 3.670 15 O -0.452 6.452 16 C -0.160 4.160 17 H 0.173 0.827 18 C -0.114 4.114 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.159 4.159 23 C -0.098 4.098 24 C -0.151 4.151 25 C 0.036 3.964 26 N -0.286 5.286 27 C 0.354 3.646 28 O -0.401 6.401 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.240 0.760 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.354 -3.473 -15.256 18.229 hybrid contribution -0.184 0.754 -1.348 1.555 sum -9.538 -2.719 -16.603 19.340 Atomic orbital electron populations 1.21811 0.97219 0.99437 1.00133 1.18512 0.92970 0.92814 0.92080 1.21945 0.99085 0.98108 1.00211 1.22045 1.30369 1.18462 0.93014 0.94294 1.26708 0.94611 0.96615 1.03408 1.70904 1.37432 1.14791 1.34823 0.83080 0.76400 0.74700 0.72988 1.20761 1.21044 1.20207 1.21151 0.96931 0.95062 0.83242 1.46058 1.52116 1.31762 1.05254 1.19733 0.79543 0.83595 0.84176 1.90674 1.39793 1.27607 1.87130 1.22235 0.95313 1.03381 0.95098 0.82667 1.23097 0.91654 1.01745 0.94915 1.20250 0.89311 0.98749 1.05399 1.18945 0.92842 0.97402 1.03279 1.20356 0.99748 0.93542 0.95710 1.21326 0.92724 1.01271 1.00614 1.21271 0.97373 0.94853 0.96321 1.20707 0.98163 0.96345 0.99849 1.18273 0.95151 0.87729 0.95222 1.43339 1.10283 1.25068 1.49869 1.19267 0.83275 0.83922 0.78180 1.90790 1.80125 1.30134 1.39027 0.93370 0.94146 0.94732 0.95075 0.93793 0.93474 0.90582 0.94202 0.93650 0.75986 0.84244 0.86396 0.87397 0.84376 0.82146 0.82478 0.73040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 7.85 71.98 0.57 -4.91 16 2 C 0.04 1.66 0.50 -52.93 -0.03 1.64 16 3 C -0.14 -5.90 7.91 71.98 0.57 -5.33 16 4 C -0.60 -31.57 8.00 25.60 0.20 -31.36 16 5 H 0.04 2.10 7.76 -2.91 -0.02 2.07 16 6 C -0.01 -0.72 5.07 84.66 0.43 -0.29 16 7 N -0.94 -52.44 12.17 21.45 0.26 -52.18 16 8 Si 1.10 48.54 29.91 68.60 2.05 50.59 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 C 0.16 6.54 4.50 86.38 0.39 6.93 16 13 N -0.70 -23.50 5.04 -463.04 -2.33 -25.83 16 14 C 0.54 17.46 5.61 87.66 0.49 17.95 16 15 O -0.57 -22.00 16.06 -3.03 -0.05 -22.05 16 16 C -0.14 -3.47 6.04 -11.72 -0.07 -3.54 16 17 H 0.16 3.41 8.14 -2.38 -0.02 3.39 16 18 C -0.08 -1.64 9.81 30.46 0.30 -1.34 16 19 C -0.13 -3.15 2.42 -54.09 -0.13 -3.28 16 20 C -0.12 -2.95 5.73 -19.84 -0.11 -3.06 16 21 C -0.07 -1.93 9.26 22.17 0.21 -1.72 16 22 C -0.14 -3.02 10.06 22.32 0.22 -2.79 16 23 C -0.08 -1.33 10.02 22.21 0.22 -1.11 16 24 C -0.13 -2.09 10.07 22.46 0.23 -1.87 16 25 C 0.13 2.69 7.12 38.37 0.27 2.96 16 26 N -0.64 -12.00 5.90 -303.36 -1.79 -13.79 16 27 C 0.57 13.41 8.47 87.71 0.74 14.16 16 28 O -0.52 -14.88 18.03 -3.06 -0.06 -14.94 16 29 H 0.05 2.31 5.16 -2.39 -0.01 2.30 16 30 H 0.04 1.48 7.04 -2.39 -0.02 1.46 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.61 7.05 -2.39 -0.02 1.59 16 34 H 0.05 2.29 5.30 -2.39 -0.01 2.28 16 35 H 0.28 15.14 3.59 -92.71 -0.33 14.81 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.40 12.48 6.29 -92.71 -0.58 11.90 16 39 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.12 2.62 7.94 -2.39 -0.02 2.60 16 41 H 0.11 3.23 6.79 -2.91 -0.02 3.21 16 42 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 43 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.43 5.60 8.96 -92.71 -0.83 4.76 16 Total: -1.00 -66.64 365.78 2.65 -63.99 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.07 Total: 31.19 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.50 Total: -16.98 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.86 Total: -91.80 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.10 Total: -36.99 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.59 kcal Total: -66.64 2.65 -63.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.851 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds