Wall clock time and date at job start Tue Mar 31 2020 16:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 N 1.46492 * 109.47363 * 59.99700 * 12 2 1 14 14 C 1.34779 * 120.00559 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 12 16 16 C 1.50689 * 120.00546 * 180.02562 * 14 13 12 17 17 H 1.09005 * 115.56103 * 34.35731 * 16 14 13 18 18 C 1.53138 * 117.52059 * 248.61154 * 16 14 13 19 19 C 1.52333 * 59.82716 * 252.55583 * 18 16 14 20 20 C 1.50547 * 121.92739 * 248.77140 * 19 18 16 21 21 C 1.37675 * 133.31583 * 36.29658 * 20 19 18 22 22 C 1.38373 * 119.98985 * 179.97438 * 21 20 19 23 23 C 1.38308 * 119.82947 * 0.02562 * 22 21 20 24 24 C 1.37930 * 120.34934 * 0.02562 * 23 22 21 25 25 C 1.39088 * 105.97682 * 216.27402 * 20 19 18 26 26 N 1.39614 * 110.25206 * 0.02562 * 25 20 19 27 27 C 1.34603 * 112.21934 * 359.97438 * 26 25 20 28 28 O 1.21288 * 126.62067 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 38 38 H 0.97009 * 120.00045 * 0.02562 * 13 12 2 39 39 H 1.09004 * 117.50963 * 0.02562 * 18 16 14 40 40 H 1.08996 * 117.52055 * 145.07560 * 18 16 14 41 41 H 1.08009 * 120.01044 * 359.94395 * 21 20 19 42 42 H 1.08008 * 120.08643 * 180.02562 * 22 21 20 43 43 H 1.08007 * 119.82285 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.90651 * 180.02562 * 24 23 22 45 45 H 0.97001 * 123.89173 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 7 1.5517 -0.0306 -2.4454 14 6 1.8768 -0.4912 -3.6696 15 8 2.5733 -1.4778 -3.7809 16 6 1.3749 0.2195 -4.9000 17 1 1.2894 1.3029 -4.8153 18 6 0.3395 -0.5065 -5.7636 19 6 1.7732 -0.3521 -6.2547 20 6 2.1244 0.5338 -7.4202 21 6 1.6447 1.7456 -7.8638 22 6 2.1822 2.3292 -8.9974 23 6 3.2007 1.6918 -9.6824 24 6 3.6833 0.4772 -9.2417 25 6 3.1488 -0.1165 -8.1002 26 7 3.4625 -1.3198 -7.4654 27 6 2.7025 -1.5334 -6.3753 28 8 2.7545 -2.4916 -5.6335 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 0.7096 1.1617 3.4844 36 1 3.1300 -0.7208 -1.2496 37 1 1.6767 -1.7489 -1.2494 38 1 0.9942 0.7583 -2.3564 39 1 0.0212 -1.4979 -5.4413 40 1 -0.4270 0.0993 -6.2469 41 1 0.8485 2.2405 -7.3273 42 1 1.8072 3.2801 -9.3465 43 1 3.6205 2.1477 -10.5670 44 1 4.4791 -0.0140 -9.7818 45 1 4.1496 -1.9310 -7.7740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:48 Heat of formation + Delta-G solvation = -1.191454 kcal Electronic energy + Delta-G solvation = -27687.368043 eV Core-core repulsion = 23864.056084 eV Total energy + Delta-G solvation = -3823.311958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85677 -39.33852 -38.31205 -36.70655 -35.87279 -35.46855 -33.18508 -31.16318 -30.76504 -29.41986 -26.50580 -25.70317 -25.64854 -25.12565 -23.24735 -22.79434 -21.69386 -20.56742 -19.38604 -18.72246 -17.92041 -17.62012 -16.31986 -16.15399 -15.73989 -15.39990 -15.25359 -14.81244 -14.69100 -14.51119 -14.20691 -14.10579 -13.88811 -13.25428 -12.93360 -12.86590 -12.72584 -12.34503 -12.26979 -12.11836 -11.54423 -11.34327 -11.24516 -11.15854 -10.91725 -10.84785 -10.70948 -10.67403 -10.34965 -10.21930 -10.12169 -9.60386 -9.35732 -9.16580 -8.98494 -8.76270 -8.40540 -8.23633 -8.15603 -6.00096 -4.09889 0.87047 1.02804 2.30194 2.84119 2.98730 3.31842 3.35723 3.39285 3.49470 3.58185 3.91850 4.07442 4.13979 4.31463 4.43004 4.64676 4.71243 4.73900 5.01989 5.14447 5.20908 5.24624 5.26621 5.34156 5.44614 5.62334 5.74027 5.87640 6.09845 6.19361 6.27847 6.37637 6.40573 6.54150 6.71632 6.82936 6.83359 6.84874 6.96940 7.04956 7.09968 7.38578 7.58097 7.71574 8.03458 8.09006 8.10329 8.19730 8.41498 8.81305 8.91246 9.55725 11.01307 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.002575 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.965550 B =10871.449493 C =11353.442611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.135 3.865 13 N -0.713 5.713 14 C 0.515 3.485 15 O -0.511 6.511 16 C -0.133 4.133 17 H 0.134 0.866 18 C -0.100 4.100 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.064 4.064 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.147 4.147 25 C 0.159 3.841 26 N -0.669 5.669 27 C 0.552 3.448 28 O -0.433 6.433 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.007 0.993 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.396 0.604 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 5.155 -24.758 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.012 3.988 13 N -0.364 5.364 14 C 0.299 3.701 15 O -0.387 6.387 16 C -0.155 4.155 17 H 0.152 0.848 18 C -0.137 4.137 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.165 4.165 23 C -0.103 4.103 24 C -0.168 4.168 25 C 0.061 3.939 26 N -0.313 5.313 27 C 0.337 3.663 28 O -0.300 6.300 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.231 0.769 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.119 3.939 -24.084 24.405 hybrid contribution 0.561 -0.201 0.671 0.897 sum 0.442 3.738 -23.413 23.714 Atomic orbital electron populations 1.21828 0.97752 0.99185 1.00065 1.18343 0.92798 0.92713 0.90534 1.21830 0.98554 0.98389 1.00055 1.20962 1.31463 1.12091 0.89938 0.92523 1.24871 0.94866 0.94928 0.98808 1.69791 1.36710 1.22743 1.23289 0.86639 0.79241 0.79824 0.82189 1.20305 1.21326 1.20272 1.21695 0.98028 0.95792 0.83260 1.46208 1.52766 1.31827 1.05612 1.19531 0.81845 0.84875 0.83867 1.90913 1.36891 1.24864 1.86024 1.22263 1.03570 1.00872 0.88763 0.84810 1.22957 0.88771 1.03230 0.98756 1.20042 1.00296 0.97344 0.94625 1.19002 0.99225 0.96295 0.96553 1.20269 0.99094 0.92867 0.95972 1.21012 0.98450 1.00797 0.96275 1.20865 0.96134 0.93910 0.99367 1.20344 1.02973 0.97285 0.96234 1.18217 0.95187 0.86629 0.93906 1.43715 1.38867 1.20936 1.27821 1.19193 0.80837 0.86908 0.79390 1.90940 1.66702 1.31095 1.41230 0.89626 0.95452 0.97441 0.89601 0.95506 0.97491 0.92977 0.92882 0.92744 0.76865 0.86706 0.86333 0.85443 0.85348 0.85322 0.85690 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.13 2.95 4.50 -4.04 -0.02 2.93 16 13 N -0.71 -12.93 4.96 -60.30 -0.30 -13.23 16 14 C 0.52 9.26 7.61 -10.99 -0.08 9.18 16 15 O -0.51 -11.35 12.36 -19.62 -0.24 -11.59 16 16 C -0.13 -1.72 6.07 -92.04 -0.56 -2.28 16 17 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.10 -1.08 9.99 -27.00 -0.27 -1.35 16 19 C -0.12 -1.53 2.42 -157.52 -0.38 -1.91 16 20 C -0.11 -1.15 6.12 -104.59 -0.64 -1.79 16 21 C -0.06 -0.52 10.03 -39.74 -0.40 -0.92 16 22 C -0.15 -1.01 10.07 -39.51 -0.40 -1.41 16 23 C -0.08 -0.57 10.02 -39.67 -0.40 -0.97 16 24 C -0.15 -1.18 10.07 -39.29 -0.40 -1.58 16 25 C 0.16 1.68 7.12 -83.60 -0.59 1.09 16 26 N -0.67 -7.95 5.90 -9.79 -0.06 -8.01 16 27 C 0.55 8.58 7.76 -11.02 -0.09 8.50 16 28 O -0.43 -8.60 14.48 -19.63 -0.28 -8.88 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 39 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.41 3.92 8.96 -40.82 -0.37 3.56 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -32.86 365.77 -10.09 -42.95 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.15 Total: 7.20 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.07 Total: -6.67 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.16 Total: -44.50 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.53 Total: -20.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.86 -10.09 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.757 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds