Wall clock time and date at job start Tue Mar 31 2020 16:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 N 1.46492 * 109.47363 * 59.99700 * 12 2 1 14 14 C 1.34779 * 120.00559 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 12 16 16 C 1.50689 * 120.00546 * 180.02562 * 14 13 12 17 17 H 1.09005 * 115.56103 * 34.35731 * 16 14 13 18 18 C 1.53138 * 117.52059 * 248.61154 * 16 14 13 19 19 C 1.52333 * 59.82716 * 252.55583 * 18 16 14 20 20 C 1.50547 * 121.92739 * 248.77140 * 19 18 16 21 21 C 1.37675 * 133.31583 * 36.29658 * 20 19 18 22 22 C 1.38373 * 119.98985 * 179.97438 * 21 20 19 23 23 C 1.38308 * 119.82947 * 0.02562 * 22 21 20 24 24 C 1.37930 * 120.34934 * 0.02562 * 23 22 21 25 25 C 1.39088 * 105.97682 * 216.27402 * 20 19 18 26 26 N 1.39614 * 110.25206 * 0.02562 * 25 20 19 27 27 C 1.34603 * 112.21934 * 359.97438 * 26 25 20 28 28 O 1.21288 * 126.62067 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 38 38 H 0.97009 * 120.00045 * 0.02562 * 13 12 2 39 39 H 1.09004 * 117.50963 * 0.02562 * 18 16 14 40 40 H 1.08996 * 117.52055 * 145.07560 * 18 16 14 41 41 H 1.08009 * 120.01044 * 359.94395 * 21 20 19 42 42 H 1.08008 * 120.08643 * 180.02562 * 22 21 20 43 43 H 1.08007 * 119.82285 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.90651 * 180.02562 * 24 23 22 45 45 H 0.97001 * 123.89173 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 7 1.5517 -0.0306 -2.4454 14 6 1.8768 -0.4912 -3.6696 15 8 2.5733 -1.4778 -3.7809 16 6 1.3749 0.2195 -4.9000 17 1 1.2894 1.3029 -4.8153 18 6 0.3395 -0.5065 -5.7636 19 6 1.7732 -0.3521 -6.2547 20 6 2.1244 0.5338 -7.4202 21 6 1.6447 1.7456 -7.8638 22 6 2.1822 2.3292 -8.9974 23 6 3.2007 1.6918 -9.6824 24 6 3.6833 0.4772 -9.2417 25 6 3.1488 -0.1165 -8.1002 26 7 3.4625 -1.3198 -7.4654 27 6 2.7025 -1.5334 -6.3753 28 8 2.7545 -2.4916 -5.6335 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 0.7096 1.1617 3.4844 36 1 3.1300 -0.7208 -1.2496 37 1 1.6767 -1.7489 -1.2494 38 1 0.9942 0.7583 -2.3564 39 1 0.0212 -1.4979 -5.4413 40 1 -0.4270 0.0993 -6.2469 41 1 0.8485 2.2405 -7.3273 42 1 1.8072 3.2801 -9.3465 43 1 3.6205 2.1477 -10.5670 44 1 4.4791 -0.0140 -9.7818 45 1 4.1496 -1.9310 -7.7740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:47 Heat of formation + Delta-G solvation = -21.125741 kcal Electronic energy + Delta-G solvation = -27688.232458 eV Core-core repulsion = 23864.056084 eV Total energy + Delta-G solvation = -3824.176374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.76161 -40.66092 -39.29874 -38.27256 -37.08317 -36.43806 -34.95359 -32.73165 -31.71269 -30.12893 -27.89127 -27.55765 -27.25901 -26.60201 -24.55455 -23.46623 -22.46042 -21.71224 -20.66469 -20.44845 -18.76587 -18.72000 -17.85194 -17.28755 -17.02330 -16.63832 -16.50243 -16.35299 -16.17759 -15.48210 -15.22268 -15.10133 -14.78975 -14.75033 -14.40928 -14.26605 -14.03508 -13.76821 -13.28904 -13.21090 -13.07039 -12.92261 -12.68554 -12.63966 -12.26785 -12.16969 -12.14981 -12.08517 -11.76913 -11.57251 -11.48416 -11.36010 -11.17710 -10.73365 -10.46967 -10.40274 -9.89063 -9.69055 -8.92869 -8.03559 -6.19145 0.15267 0.43634 1.31649 1.42160 1.43042 1.50108 1.69120 2.00008 2.22625 2.46778 2.78085 3.01594 3.16227 3.19609 3.30709 3.36653 3.75030 3.96391 4.06636 4.25129 4.37420 4.45063 4.48645 4.49841 4.60144 4.63725 4.71314 4.75380 4.86741 4.99188 5.06242 5.10321 5.12600 5.19624 5.22713 5.37674 5.52679 5.61517 5.63684 5.65954 5.67650 5.71157 5.89164 6.14113 6.15756 6.21330 6.43234 6.71242 6.84227 7.05618 7.43170 7.48201 8.95177 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.002575 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.965550 B =10871.449493 C =11353.442611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.054 3.946 3 C -0.120 4.120 4 C -0.533 4.533 5 H 0.039 0.961 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.152 3.848 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.557 6.557 16 C -0.134 4.134 17 H 0.173 0.827 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.119 4.119 21 C -0.065 4.065 22 C -0.138 4.138 23 C -0.083 4.083 24 C -0.146 4.146 25 C 0.125 3.875 26 N -0.664 5.664 27 C 0.535 3.465 28 O -0.497 6.497 29 H 0.064 0.936 30 H 0.015 0.985 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.410 0.590 39 H 0.094 0.906 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.141 0.859 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 8.276 -27.387 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.178 4.178 4 C -0.572 4.572 5 H 0.057 0.943 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.294 3.706 15 O -0.436 6.436 16 C -0.156 4.156 17 H 0.191 0.809 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.083 4.083 22 C -0.157 4.157 23 C -0.101 4.101 24 C -0.167 4.167 25 C 0.028 3.972 26 N -0.308 5.308 27 C 0.322 3.678 28 O -0.369 6.369 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.247 0.753 39 H 0.113 0.887 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.159 0.841 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.289 7.127 -26.770 27.732 hybrid contribution 0.972 -1.134 1.347 2.011 sum -0.317 5.992 -25.423 26.122 Atomic orbital electron populations 1.21668 0.96865 0.98603 1.00658 1.18332 0.93416 0.93046 0.89909 1.21668 0.97740 0.97721 1.00651 1.21248 1.31895 1.12183 0.91846 0.94259 1.25416 0.95108 0.95606 1.00802 1.69882 1.36810 1.23105 1.23731 0.85853 0.78574 0.78840 0.79746 1.20435 1.20401 1.20420 1.21193 0.96508 0.94895 0.84583 1.45999 1.52961 1.32004 1.04770 1.20440 0.80776 0.84367 0.85003 1.90924 1.38822 1.27075 1.86734 1.22240 1.04900 1.02271 0.86140 0.80925 1.23159 0.88829 1.02672 0.96924 1.20075 1.00946 0.96842 0.95276 1.19036 0.99942 0.97322 0.95887 1.20609 0.99531 0.91736 0.96449 1.21459 0.97511 1.01512 0.95214 1.21306 0.95723 0.93076 1.00041 1.20666 1.03037 0.97738 0.95247 1.18553 0.96692 0.86449 0.95493 1.43626 1.38347 1.21787 1.27066 1.19803 0.81563 0.87046 0.79396 1.90893 1.68847 1.33546 1.43627 0.91712 0.96593 0.93990 0.91687 0.96641 0.94038 0.92896 0.95159 0.95095 0.75262 0.88706 0.81668 0.82892 0.82342 0.82353 0.84101 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.55 0.50 -52.93 -0.03 2.52 16 3 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 4 C -0.53 -29.19 8.01 25.60 0.21 -28.99 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C 0.03 1.65 5.15 84.66 0.44 2.09 16 7 N -0.90 -48.21 9.35 21.45 0.20 -48.01 16 8 Si 0.94 43.57 29.54 68.60 2.03 45.59 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 C 0.15 6.90 4.50 86.38 0.39 7.29 16 13 N -0.70 -25.33 4.96 -463.07 -2.30 -27.63 16 14 C 0.51 18.41 7.61 87.65 0.67 19.08 16 15 O -0.56 -26.12 12.36 21.04 0.26 -25.86 16 16 C -0.13 -3.23 6.07 -11.72 -0.07 -3.30 16 17 H 0.17 2.74 8.14 -2.38 -0.02 2.72 16 18 C -0.08 -1.54 9.99 30.42 0.30 -1.24 16 19 C -0.13 -3.14 2.42 -54.13 -0.13 -3.27 16 20 C -0.12 -2.26 6.12 -19.84 -0.12 -2.38 16 21 C -0.07 -0.78 10.03 22.17 0.22 -0.56 16 22 C -0.14 -1.21 10.07 22.32 0.22 -0.99 16 23 C -0.08 -0.77 10.02 22.21 0.22 -0.54 16 24 C -0.15 -1.97 10.07 22.46 0.23 -1.74 16 25 C 0.12 2.48 7.12 38.37 0.27 2.75 16 26 N -0.66 -16.30 5.90 -303.36 -1.79 -18.09 16 27 C 0.53 17.44 7.76 87.71 0.68 18.12 16 28 O -0.50 -21.39 14.48 21.02 0.30 -21.08 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 1.55 6.86 -2.38 -0.02 1.53 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 1.53 6.86 -2.39 -0.02 1.51 16 35 H 0.26 13.52 8.31 -92.71 -0.77 12.74 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 12.25 6.16 -92.70 -0.57 11.68 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.17 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 43 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.42 8.55 8.96 -92.71 -0.83 7.71 16 Total: -1.00 -76.93 365.77 3.00 -73.92 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.37 Total: 21.95 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.66 Total: -0.79 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -3.88 Total: -93.73 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: 0.56 Total: -46.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.93 3.00 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.796 kcal (2) G-P(sol) polarization free energy of solvation -76.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds