Wall clock time and date at job start Tue Mar 31 2020 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53040 * 109.45863 * 243.48991 * 3 2 1 5 5 C 1.53190 * 109.31329 * 181.38642 * 4 3 2 6 6 N 1.46927 * 108.77913 * 305.36511 * 5 4 3 7 7 C 1.34768 * 120.63601 * 233.58955 * 6 5 4 8 8 O 1.21593 * 119.99587 * 354.89910 * 7 6 5 9 9 N 1.34770 * 120.00305 * 174.90405 * 7 6 5 10 10 C 1.46511 * 120.00108 * 185.14239 * 9 7 6 11 11 C 1.50702 * 109.47124 * 179.97438 * 10 9 7 12 12 C 1.38306 * 119.92863 * 89.99673 * 11 10 9 13 13 C 1.38096 * 120.06567 * 180.02562 * 12 11 10 14 14 C 1.38881 * 119.93004 * 359.97438 * 13 12 11 15 15 O 1.35751 * 120.06816 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99968 * 5.49413 * 15 14 13 17 17 H 1.08001 * 119.99809 * 354.94909 * 16 15 14 18 18 C 1.38653 * 119.99970 * 174.95078 * 16 15 14 19 19 N 1.31557 * 120.00262 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47388 * 89.99766 * 20 18 16 22 22 H 1.48502 * 109.47432 * 209.99861 * 20 18 16 23 23 H 1.48501 * 109.46953 * 329.99405 * 20 18 16 24 24 C 1.38881 * 119.86614 * 0.26541 * 14 13 12 25 25 C 1.38104 * 119.92688 * 359.50269 * 24 14 13 26 26 C 1.46928 * 118.73446 * 53.85888 * 6 5 4 27 27 C 1.53038 * 109.46280 * 3.55730 * 3 2 1 28 28 H 4.44653 * 5.63495 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.45582 * 123.52079 * 3 2 1 30 30 H 1.09001 * 109.49921 * 61.43782 * 4 3 2 31 31 H 1.08996 * 109.52565 * 301.35547 * 4 3 2 32 32 H 1.09003 * 109.58515 * 185.57806 * 5 4 3 33 33 H 1.09004 * 109.70473 * 65.22192 * 5 4 3 34 34 H 0.96994 * 120.00122 * 5.13622 * 9 7 6 35 35 H 1.08997 * 109.47344 * 59.99568 * 10 9 7 36 36 H 1.09000 * 109.46920 * 299.99448 * 10 9 7 37 37 H 1.07997 * 119.96745 * 0.02562 * 12 11 10 38 38 H 1.07997 * 120.03631 * 179.97438 * 13 12 11 39 39 H 0.97004 * 120.00279 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03534 * 179.72337 * 24 14 13 41 41 H 1.07993 * 119.96363 * 180.22830 * 25 24 14 42 42 H 1.09001 * 109.58684 * 65.92677 * 26 6 5 43 43 H 1.08996 * 109.58670 * 186.35575 * 26 6 5 44 44 H 1.08997 * 109.50051 * 298.56704 * 27 3 2 45 45 H 1.09006 * 109.49689 * 58.66550 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.6450 1.2913 5 6 4.6870 0.6753 1.2723 6 7 5.1843 -0.6878 1.0411 7 6 6.0787 -1.2444 1.8817 8 8 6.5518 -0.5866 2.7884 9 7 6.4487 -2.5298 1.7174 10 6 7.3332 -3.1683 2.6955 11 6 7.5911 -4.5948 2.2835 12 6 8.6640 -4.8928 1.4631 13 6 8.9027 -6.1989 1.0834 14 6 8.0644 -7.2136 1.5266 15 8 8.2968 -8.4986 1.1555 16 6 9.4208 -8.7384 0.4505 17 1 10.0465 -7.9163 0.1357 18 6 9.7734 -10.0404 0.1297 19 7 9.0115 -11.0419 0.5136 20 14 11.3310 -10.3727 -0.8464 21 1 12.4705 -10.5578 0.0875 22 1 11.1527 -11.6025 -1.6596 23 1 11.6079 -9.2221 -1.7434 24 6 6.9850 -6.9105 2.3462 25 6 6.7544 -5.6029 2.7264 26 6 4.6924 -1.4305 -0.1273 27 6 3.1566 -1.4393 -0.0895 28 1 -1.0501 0.0001 -0.0003 29 1 3.0088 0.5684 -0.8568 30 1 2.8138 0.0634 2.1475 31 1 2.7725 1.6626 1.3664 32 1 5.0571 1.0417 2.2299 33 1 5.0318 1.3305 0.4723 34 1 6.1294 -3.0323 0.9517 35 1 6.8598 -3.1539 3.6772 36 1 8.2777 -2.6260 2.7395 37 1 9.3157 -4.1033 1.1192 38 1 9.7404 -6.4311 0.4425 39 1 9.2580 -11.9527 0.2888 40 1 6.3288 -7.6968 2.6888 41 1 5.9174 -5.3670 3.3667 42 1 5.0354 -0.9439 -1.0404 43 1 5.0659 -2.4539 -0.0936 44 1 2.8148 -2.0012 0.7796 45 1 2.7742 -1.9050 -0.9979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825884685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:22 Heat of formation + Delta-G solvation = 4.146181 kcal Electronic energy + Delta-G solvation = -26482.390622 eV Core-core repulsion = 22659.310121 eV Total energy + Delta-G solvation = -3823.080501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50562 -40.77607 -39.05143 -38.37272 -35.75799 -35.23275 -34.26921 -32.46915 -32.01855 -31.82506 -30.99376 -27.75113 -26.89571 -25.75665 -24.21694 -23.63933 -22.56527 -22.09991 -20.64677 -19.88600 -19.61402 -18.88196 -18.63848 -17.36303 -16.77876 -16.42974 -16.27146 -16.07271 -15.74813 -15.59960 -15.41305 -15.39999 -15.15547 -14.90489 -14.62349 -14.46717 -14.35389 -14.12194 -13.63069 -13.40285 -13.26118 -13.01106 -12.62095 -12.54549 -12.35727 -12.31213 -12.25765 -12.14743 -12.11978 -12.08595 -11.30614 -11.19838 -10.96107 -10.92638 -10.80093 -10.20009 -9.80923 -9.48335 -9.01501 -8.47876 -6.15964 0.53061 0.58246 1.36429 1.44367 1.53304 1.73300 1.89248 1.93406 2.15182 2.17471 2.75653 3.01529 3.21900 3.39622 3.49472 3.78844 3.85238 3.92980 4.04175 4.08572 4.16989 4.18362 4.33341 4.44936 4.47460 4.56074 4.58179 4.71402 4.76816 4.81973 4.84175 4.88208 4.97352 5.04868 5.10001 5.15074 5.23084 5.27202 5.33746 5.47526 5.53368 5.58517 5.69506 5.76394 5.94633 6.01920 6.16402 6.72752 6.96599 6.97198 7.55868 7.76254 8.74868 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002140 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.978624 B =13083.912262 C =13719.887618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.209 4.209 3 C 0.023 3.977 4 C -0.116 4.116 5 C 0.130 3.870 6 N -0.629 5.629 7 C 0.702 3.298 8 O -0.635 6.635 9 N -0.733 5.733 10 C 0.203 3.797 11 C -0.181 4.181 12 C -0.044 4.044 13 C -0.243 4.243 14 C 0.123 3.877 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.251 1.251 24 C -0.204 4.204 25 C -0.043 4.043 26 C 0.110 3.890 27 C -0.121 4.121 28 H 0.239 0.761 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.115 0.885 41 H 0.146 0.854 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 23.196 -3.565 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.209 4.209 3 C 0.005 3.995 4 C -0.155 4.155 5 C 0.007 3.993 6 N -0.366 5.366 7 C 0.404 3.596 8 O -0.517 6.517 9 N -0.390 5.390 10 C 0.079 3.921 11 C -0.183 4.183 12 C -0.063 4.063 13 C -0.262 4.262 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.223 4.223 25 C -0.061 4.061 26 C -0.013 4.013 27 C -0.159 4.159 28 H 0.256 0.744 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.163 0.837 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.450 23.227 -2.873 26.055 hybrid contribution 0.208 -1.069 -0.549 1.220 sum -11.242 22.158 -3.422 25.081 Atomic orbital electron populations 1.25672 0.96905 0.99895 1.00166 1.23464 0.95030 1.01270 1.01139 1.18333 0.84025 0.97482 0.99637 1.21880 0.94666 1.02192 0.96731 1.21535 0.92980 0.81551 1.03244 1.47370 1.44605 1.17111 1.27495 1.16027 0.79832 0.81871 0.81888 1.90874 1.60593 1.63090 1.37099 1.45446 1.53091 1.10740 1.29769 1.19714 0.93682 0.87652 0.91009 1.19484 0.99131 0.94527 1.05121 1.20936 0.96103 0.94754 0.94491 1.21241 1.03544 0.93550 1.07864 1.19988 0.94770 0.85045 0.92982 1.83950 1.41666 1.22959 1.64884 1.21831 1.00129 0.94472 1.32430 0.87862 1.26580 1.02846 0.93756 0.98839 1.70179 1.39651 0.99942 1.45884 0.84596 0.75264 0.78802 0.77649 1.18998 1.19697 1.17490 1.20435 0.99766 0.98115 1.04007 1.20860 0.98088 0.90187 0.96991 1.21935 0.93822 0.97230 0.88309 1.21974 0.94749 0.95661 1.03518 0.74436 0.87146 0.92764 0.88943 0.90415 0.89377 0.75665 0.91349 0.91442 0.84345 0.86123 0.91819 0.86692 0.83679 0.88659 0.89566 0.92344 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.21 -3.12 12.56 31.12 0.39 -2.73 16 3 C 0.02 0.27 2.52 -12.57 -0.03 0.24 16 4 C -0.12 -1.49 5.32 30.67 0.16 -1.33 16 5 C 0.13 1.97 6.42 86.36 0.55 2.52 16 6 N -0.63 -11.33 2.97 -836.06 -2.48 -13.81 16 7 C 0.70 17.68 8.29 179.06 1.49 19.16 16 8 O -0.63 -21.05 15.79 -4.01 -0.06 -21.11 16 9 N -0.73 -16.58 5.46 -482.28 -2.63 -19.22 16 10 C 0.20 5.08 5.80 85.63 0.50 5.58 16 11 C -0.18 -5.21 5.25 -19.83 -0.10 -5.31 16 12 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 13 C -0.24 -9.87 9.17 22.39 0.21 -9.66 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.23 -13.26 9.76 -22.78 -0.22 -13.49 16 16 C -0.41 -23.24 9.49 67.92 0.64 -22.60 16 17 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 18 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 19 N -0.92 -55.24 13.67 21.61 0.30 -54.95 16 20 Si 1.02 41.73 29.55 68.60 2.03 43.76 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 24 C -0.20 -8.12 9.99 22.39 0.22 -7.89 16 25 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 26 C 0.11 1.33 6.46 86.51 0.56 1.89 16 27 C -0.12 -1.44 5.33 30.82 0.16 -1.27 16 28 H 0.24 1.58 7.80 -4.41 -0.03 1.55 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.53 7.04 -2.39 -0.02 1.51 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.40 7.85 5.92 -92.71 -0.55 7.30 16 35 H 0.07 1.72 8.08 -2.39 -0.02 1.71 16 36 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.03 5.56 -2.39 -0.01 1.02 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -74.59 378.70 4.61 -69.98 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.46 Total: 28.72 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 7.23 Total: -19.89 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -4.82 Total: -87.98 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.29 Total: -34.60 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -74.59 4.61 -69.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825884685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.129 kcal (2) G-P(sol) polarization free energy of solvation -74.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds