Wall clock time and date at job start Tue Mar 31 2020 16:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47408 * 227.45185 * 3 2 1 5 5 H 1.09009 * 109.46648 * 55.00051 * 4 3 2 6 6 N 1.46499 * 109.47354 * 295.00910 * 4 3 2 7 7 C 1.34770 * 120.00278 * 84.99072 * 6 4 3 8 8 O 1.21586 * 120.00020 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99924 * 179.97438 * 7 6 4 10 10 C 1.47419 * 125.64850 * 359.97438 * 9 7 6 11 11 C 1.54905 * 104.83258 * 155.91019 * 10 9 7 12 12 C 1.55153 * 101.58432 * 37.00633 * 11 10 9 13 13 O 1.42899 * 110.72123 * 83.04292 * 12 11 10 14 14 C 1.50702 * 110.72079 * 206.13591 * 12 11 10 15 15 H 1.08002 * 120.00299 * 357.56389 * 14 12 11 16 16 C 1.37884 * 119.99942 * 177.27948 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47319 * 125.61416 * 180.20438 * 9 7 6 23 23 C 1.50700 * 109.47362 * 175.00025 * 4 3 2 24 24 C 1.38235 * 119.99395 * 79.73194 * 23 4 3 25 25 C 1.38235 * 119.99461 * 179.74284 * 24 23 4 26 26 C 1.38236 * 119.99950 * 0.55071 * 25 24 23 27 27 C 1.38227 * 120.00227 * 359.70210 * 26 25 24 28 28 C 1.38236 * 120.00125 * 0.02562 * 27 26 25 29 29 H 4.44654 * 5.63511 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46926 * 107.45590 * 3 2 1 31 31 H 1.08998 * 109.47826 * 347.45577 * 3 2 1 32 32 H 0.97003 * 119.99773 * 264.99401 * 6 4 3 33 33 H 1.08994 * 110.36742 * 37.06455 * 10 9 7 34 34 H 1.09008 * 110.36374 * 274.74316 * 10 9 7 35 35 H 1.09004 * 111.00291 * 278.93328 * 11 10 9 36 36 H 1.09005 * 111.00807 * 155.08431 * 11 10 9 37 37 H 0.96699 * 114.00083 * 182.43988 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.06766 * 61.67566 * 22 9 7 40 40 H 1.08999 * 109.85130 * 300.41923 * 22 9 7 41 41 H 1.07997 * 120.00377 * 0.02562 * 24 23 4 42 42 H 1.08001 * 120.00209 * 180.27507 * 25 24 23 43 43 H 1.08003 * 119.99913 * 179.72393 * 26 25 24 44 44 H 1.08005 * 120.00357 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.00569 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.9763 1.0627 5 1 2.7210 0.7204 2.0291 6 7 2.7673 2.3412 0.6989 7 6 1.5498 2.8088 1.0387 8 8 0.7738 2.0978 1.6476 9 7 1.1928 4.0647 0.7044 10 6 2.0319 5.0302 -0.0285 11 6 1.0277 6.0102 -0.6848 12 6 -0.0622 6.1216 0.4138 13 8 0.3143 7.0804 1.4042 14 6 -1.3951 6.4789 -0.1918 15 1 -1.4753 6.6576 -1.2539 16 6 -2.5136 6.5719 0.6092 17 7 -2.4160 6.3542 1.9025 18 14 -4.1672 7.0072 -0.1426 19 1 -4.0098 7.2014 -1.6064 20 1 -5.1309 5.9058 0.1094 21 1 -4.6758 8.2601 0.4714 22 6 -0.0990 4.7010 1.0155 23 6 4.6575 0.8870 1.1477 24 6 5.4425 1.5387 0.2150 25 6 6.8203 1.4611 0.2961 26 6 7.4129 0.7225 1.3032 27 6 6.6278 0.0666 2.2328 28 6 5.2501 0.1487 2.1551 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.3091 -0.9803 31 1 3.0098 -1.0023 0.2232 32 1 3.3865 2.9085 0.2134 33 1 2.6184 4.5198 -0.7923 34 1 2.6869 5.5633 0.6608 35 1 0.6157 5.5908 -1.6027 36 1 1.4926 6.9779 -0.8735 37 1 -0.3158 7.1610 2.1333 38 1 -3.2028 6.4200 2.4661 39 1 -0.2369 4.7590 2.0952 40 1 -0.9109 4.1291 0.5663 41 1 4.9794 2.1121 -0.5744 42 1 7.4337 1.9738 -0.4300 43 1 8.4893 0.6583 1.3639 44 1 7.0908 -0.5101 3.0199 45 1 4.6367 -0.3641 2.8811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826791632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:12 Heat of formation + Delta-G solvation = 9.393895 kcal Electronic energy + Delta-G solvation = -28002.359312 eV Core-core repulsion = 24179.506369 eV Total energy + Delta-G solvation = -3822.852943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.21586 -39.15423 -37.49897 -35.62006 -34.22454 -32.88572 -32.17658 -31.51368 -31.06251 -29.80870 -28.70826 -27.69770 -25.21955 -24.12507 -23.02004 -22.45604 -20.96080 -19.60568 -19.40953 -18.18124 -17.48535 -17.11997 -16.75537 -16.04761 -15.48526 -15.37736 -14.94573 -14.70273 -14.40859 -14.23325 -14.04466 -13.71823 -13.59639 -13.13892 -12.98793 -12.86571 -12.76899 -12.62456 -12.20825 -11.89467 -11.64583 -11.41973 -11.29974 -11.13407 -11.04158 -10.78015 -10.63634 -10.46176 -10.17804 -10.14243 -9.79262 -9.45485 -9.30479 -9.15283 -9.03436 -8.66055 -8.60813 -8.28640 -7.70934 -6.26948 -4.35116 1.07094 1.16609 3.10716 3.21550 3.24470 3.29908 3.31518 3.33447 3.61692 3.84988 4.27720 4.40666 4.48456 4.65290 4.76502 4.84091 4.93726 5.00965 5.22233 5.23768 5.33214 5.37643 5.40415 5.59978 5.69403 5.72962 5.76203 5.80517 5.91614 6.04058 6.12210 6.20927 6.27557 6.34749 6.41018 6.53220 6.73759 6.75329 6.81537 6.91758 7.02679 7.29096 7.35134 7.67517 7.75514 8.05268 8.14349 8.58661 8.69205 9.21942 9.32682 9.42452 10.80861 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003106 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.520313 B = 9012.758566 C = 9792.518644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.197 4.197 3 C -0.010 4.010 4 C 0.211 3.789 5 H 0.099 0.901 6 N -0.746 5.746 7 C 0.716 3.284 8 O -0.583 6.583 9 N -0.631 5.631 10 C 0.104 3.896 11 C -0.115 4.115 12 C 0.247 3.753 13 O -0.586 6.586 14 C -0.536 4.536 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.126 3.874 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.105 4.105 29 H 0.209 0.791 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.391 0.609 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.384 0.616 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.123 -11.268 -2.988 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.197 4.197 3 C -0.048 4.048 4 C 0.105 3.895 5 H 0.117 0.883 6 N -0.404 5.404 7 C 0.418 3.582 8 O -0.460 6.460 9 N -0.368 5.368 10 C -0.020 4.020 11 C -0.153 4.153 12 C 0.207 3.793 13 O -0.395 6.395 14 C -0.574 4.574 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.533 5.533 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.004 3.996 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.124 4.124 29 H 0.226 0.774 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.226 0.774 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.934 -11.785 -2.726 20.810 hybrid contribution -1.287 0.445 -0.160 1.371 sum 15.647 -11.340 -2.885 19.538 Atomic orbital electron populations 1.24640 0.95727 0.99393 0.99372 1.22405 0.93907 1.01686 1.01708 1.19036 0.86155 0.99834 0.99812 1.19507 0.89022 0.81756 0.99220 0.88328 1.45228 1.16655 1.14731 1.63784 1.15453 0.81714 0.81040 0.79960 1.90909 1.51764 1.56879 1.46459 1.48005 1.19013 1.10790 1.59016 1.22204 0.94237 0.90987 0.94527 1.22715 0.96256 0.97969 0.98410 1.19503 0.91358 0.83674 0.84776 1.86085 1.52802 1.62525 1.38109 1.21545 0.92231 1.48586 0.95063 0.91554 1.25075 0.99610 0.93699 0.94927 1.69661 1.30848 1.48784 1.03994 0.86358 0.83021 0.78115 0.79461 1.19619 1.20790 1.20756 1.22871 0.81190 0.95051 1.00515 1.19945 0.94553 0.98403 0.95928 1.20975 0.93803 0.99460 0.98692 1.21140 0.94645 0.99101 0.98584 1.21180 0.99862 0.97626 0.95251 1.21143 0.93632 0.99727 0.99078 1.21048 0.94978 0.98755 0.97599 0.77435 0.89931 0.89299 0.77375 0.92897 0.92144 0.90624 0.90672 0.76518 0.92051 0.92058 0.91924 0.86034 0.85900 0.86114 0.85911 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 17.91 29.55 0.53 -2.45 16 2 C -0.20 -3.22 11.17 -37.12 -0.41 -3.63 16 3 C -0.01 -0.13 5.36 -29.52 -0.16 -0.29 16 4 C 0.21 2.75 2.44 -69.08 -0.17 2.58 16 5 H 0.10 1.49 7.44 -51.92 -0.39 1.10 16 6 N -0.75 -11.27 4.95 -59.81 -0.30 -11.57 16 7 C 0.72 14.41 7.80 -86.92 -0.68 13.73 16 8 O -0.58 -13.60 13.52 5.29 0.07 -13.53 16 9 N -0.63 -13.13 3.33 -176.00 -0.59 -13.71 16 10 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 11 C -0.12 -2.30 6.23 -24.59 -0.15 -2.45 16 12 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 13 O -0.59 -14.83 13.08 -35.23 -0.46 -15.29 16 14 C -0.54 -14.04 8.11 -34.44 -0.28 -14.32 16 15 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 16 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 17 N -0.89 -23.93 10.96 55.43 0.61 -23.32 16 18 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.13 3.08 5.39 -2.90 -0.02 3.07 16 23 C -0.09 -0.92 4.95 -104.62 -0.52 -1.44 16 24 C -0.11 -1.04 9.05 -39.58 -0.36 -1.40 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 28 C -0.11 -1.01 9.67 -39.58 -0.38 -1.39 16 29 H 0.21 3.14 7.80 -54.08 -0.42 2.72 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.39 5.05 5.36 -40.82 -0.22 4.83 16 33 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 34 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.38 10.01 7.24 45.56 0.33 10.34 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.06 1.65 8.00 -51.93 -0.42 1.24 16 40 H 0.06 1.68 7.81 -51.93 -0.41 1.27 16 41 H 0.12 1.02 6.93 -52.49 -0.36 0.65 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -31.29 374.40 -9.62 -40.92 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -5.60 Total: 17.94 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -3.98 Total: -2.61 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.27 Total: -48.60 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.39 Total: -28.82 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.29 -9.62 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826791632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.312 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds