Wall clock time and date at job start Tue Mar 31 2020 16:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47408 * 227.45185 * 3 2 1 5 5 H 1.09009 * 109.46648 * 55.00051 * 4 3 2 6 6 N 1.46499 * 109.47354 * 295.00910 * 4 3 2 7 7 C 1.34770 * 120.00278 * 84.99072 * 6 4 3 8 8 O 1.21586 * 120.00020 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99924 * 179.97438 * 7 6 4 10 10 C 1.47419 * 125.64850 * 359.97438 * 9 7 6 11 11 C 1.54905 * 104.83258 * 155.91019 * 10 9 7 12 12 C 1.55153 * 101.58432 * 37.00633 * 11 10 9 13 13 O 1.42899 * 110.72123 * 83.04292 * 12 11 10 14 14 C 1.50702 * 110.72079 * 206.13591 * 12 11 10 15 15 H 1.08002 * 120.00299 * 357.56389 * 14 12 11 16 16 C 1.37884 * 119.99942 * 177.27948 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47319 * 125.61416 * 180.20438 * 9 7 6 23 23 C 1.50700 * 109.47362 * 175.00025 * 4 3 2 24 24 C 1.38235 * 119.99395 * 79.73194 * 23 4 3 25 25 C 1.38235 * 119.99461 * 179.74284 * 24 23 4 26 26 C 1.38236 * 119.99950 * 0.55071 * 25 24 23 27 27 C 1.38227 * 120.00227 * 359.70210 * 26 25 24 28 28 C 1.38236 * 120.00125 * 0.02562 * 27 26 25 29 29 H 4.44654 * 5.63511 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46926 * 107.45590 * 3 2 1 31 31 H 1.08998 * 109.47826 * 347.45577 * 3 2 1 32 32 H 0.97003 * 119.99773 * 264.99401 * 6 4 3 33 33 H 1.08994 * 110.36742 * 37.06455 * 10 9 7 34 34 H 1.09008 * 110.36374 * 274.74316 * 10 9 7 35 35 H 1.09004 * 111.00291 * 278.93328 * 11 10 9 36 36 H 1.09005 * 111.00807 * 155.08431 * 11 10 9 37 37 H 0.96699 * 114.00083 * 182.43988 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.06766 * 61.67566 * 22 9 7 40 40 H 1.08999 * 109.85130 * 300.41923 * 22 9 7 41 41 H 1.07997 * 120.00377 * 0.02562 * 24 23 4 42 42 H 1.08001 * 120.00209 * 180.27507 * 25 24 23 43 43 H 1.08003 * 119.99913 * 179.72393 * 26 25 24 44 44 H 1.08005 * 120.00357 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.00569 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.9763 1.0627 5 1 2.7210 0.7204 2.0291 6 7 2.7673 2.3412 0.6989 7 6 1.5498 2.8088 1.0387 8 8 0.7738 2.0978 1.6476 9 7 1.1928 4.0647 0.7044 10 6 2.0319 5.0302 -0.0285 11 6 1.0277 6.0102 -0.6848 12 6 -0.0622 6.1216 0.4138 13 8 0.3143 7.0804 1.4042 14 6 -1.3951 6.4789 -0.1918 15 1 -1.4753 6.6576 -1.2539 16 6 -2.5136 6.5719 0.6092 17 7 -2.4160 6.3542 1.9025 18 14 -4.1672 7.0072 -0.1426 19 1 -4.0098 7.2014 -1.6064 20 1 -5.1309 5.9058 0.1094 21 1 -4.6758 8.2601 0.4714 22 6 -0.0990 4.7010 1.0155 23 6 4.6575 0.8870 1.1477 24 6 5.4425 1.5387 0.2150 25 6 6.8203 1.4611 0.2961 26 6 7.4129 0.7225 1.3032 27 6 6.6278 0.0666 2.2328 28 6 5.2501 0.1487 2.1551 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.3091 -0.9803 31 1 3.0098 -1.0023 0.2232 32 1 3.3865 2.9085 0.2134 33 1 2.6184 4.5198 -0.7923 34 1 2.6869 5.5633 0.6608 35 1 0.6157 5.5908 -1.6027 36 1 1.4926 6.9779 -0.8735 37 1 -0.3158 7.1610 2.1333 38 1 -3.2028 6.4200 2.4661 39 1 -0.2369 4.7590 2.0952 40 1 -0.9109 4.1291 0.5663 41 1 4.9794 2.1121 -0.5744 42 1 7.4337 1.9738 -0.4300 43 1 8.4893 0.6583 1.3639 44 1 7.0908 -0.5101 3.0199 45 1 4.6367 -0.3641 2.8811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826791632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:11 Heat of formation + Delta-G solvation = -10.574817 kcal Electronic energy + Delta-G solvation = -28003.225221 eV Core-core repulsion = 24179.506369 eV Total energy + Delta-G solvation = -3823.718851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48425 -40.26506 -39.08096 -36.86989 -36.02862 -34.20635 -34.18202 -32.58645 -31.76932 -31.32451 -29.82331 -29.43926 -27.02448 -25.27782 -24.19208 -23.47337 -21.89477 -21.38519 -20.86068 -19.52313 -19.07755 -18.71773 -17.77055 -17.29755 -17.08021 -16.71189 -16.27426 -15.99744 -15.85732 -15.41039 -15.21752 -14.91191 -14.77357 -14.72261 -14.33241 -14.15953 -13.98771 -13.75910 -13.50591 -13.43746 -13.25117 -12.94676 -12.87653 -12.52271 -12.32010 -12.25655 -12.09243 -11.99564 -11.84618 -11.51449 -11.19020 -11.13266 -10.96004 -10.65416 -10.28688 -10.05884 -9.78739 -9.65174 -9.38277 -8.26870 -6.42360 0.38276 0.53299 1.39024 1.42342 1.53069 1.69718 1.98218 2.01736 2.28345 2.37299 2.89940 2.99934 3.10624 3.42382 3.80715 3.83619 3.96221 4.07975 4.15630 4.17375 4.29631 4.30653 4.34775 4.38008 4.57572 4.63463 4.65215 4.72985 4.73253 4.89185 5.05313 5.06585 5.13230 5.18354 5.19211 5.26046 5.36473 5.45757 5.50714 5.59645 5.66615 5.72845 5.75347 6.02919 6.12051 6.19550 6.64440 6.86406 7.10738 7.28430 7.36100 7.65540 8.79419 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003106 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.520313 B = 9012.758566 C = 9792.518644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.197 4.197 3 C -0.011 4.011 4 C 0.216 3.784 5 H 0.072 0.928 6 N -0.726 5.726 7 C 0.711 3.289 8 O -0.622 6.622 9 N -0.637 5.637 10 C 0.108 3.892 11 C -0.110 4.110 12 C 0.233 3.767 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.067 0.933 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.147 3.853 23 C -0.100 4.100 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.212 0.788 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.405 0.595 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.376 0.624 38 H 0.270 0.730 39 H 0.024 0.976 40 H 0.027 0.973 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.154 -11.397 -4.635 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.197 4.197 3 C -0.048 4.048 4 C 0.111 3.889 5 H 0.090 0.910 6 N -0.384 5.384 7 C 0.413 3.587 8 O -0.502 6.502 9 N -0.375 5.375 10 C -0.014 4.014 11 C -0.147 4.147 12 C 0.192 3.808 13 O -0.396 6.396 14 C -0.593 4.593 15 H 0.085 0.915 16 C -0.176 4.176 17 N -0.556 5.556 18 Si 0.788 3.212 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.023 3.977 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.229 0.771 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.243 0.757 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 20.036 -11.916 -4.406 23.725 hybrid contribution -2.141 0.436 0.396 2.221 sum 17.895 -11.480 -4.010 21.636 Atomic orbital electron populations 1.25123 0.96760 1.00820 1.00824 1.23336 0.95289 1.00528 1.00504 1.19272 0.83632 1.01252 1.00665 1.19496 0.90979 0.80407 0.98057 0.91012 1.45075 1.14834 1.15735 1.62748 1.15679 0.82800 0.80528 0.79711 1.90885 1.53373 1.57854 1.48119 1.47942 1.18228 1.11612 1.59676 1.22357 0.93484 0.90257 0.95293 1.22704 0.95349 0.99541 0.97150 1.19715 0.92637 0.82827 0.85590 1.86074 1.52539 1.62923 1.38110 1.21868 0.93521 1.48716 0.95220 0.91516 1.25824 1.02809 0.93662 0.95328 1.69768 1.31531 1.49292 1.04970 0.85426 0.79027 0.77686 0.79016 1.18834 1.21076 1.20239 1.22318 0.82294 0.95444 0.97668 1.19698 0.92571 1.00304 0.97449 1.21129 0.94428 0.99366 0.98604 1.21446 0.94349 0.98901 0.99026 1.21551 1.01193 0.96574 0.94548 1.21414 0.93066 0.99783 0.99732 1.21191 0.95892 0.98981 0.97560 0.77076 0.87871 0.86658 0.75690 0.88323 0.91378 0.89998 0.89170 0.77424 0.92109 0.95796 0.95437 0.85001 0.83667 0.83752 0.84011 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.78 17.91 74.32 1.33 -6.45 16 2 C -0.20 -6.45 11.17 31.12 0.35 -6.10 16 3 C -0.01 -0.25 5.36 28.79 0.15 -0.09 16 4 C 0.22 5.40 2.44 44.25 0.11 5.51 16 5 H 0.07 2.21 7.44 -2.38 -0.02 2.19 16 6 N -0.73 -20.93 4.95 -461.41 -2.28 -23.21 16 7 C 0.71 28.74 7.80 179.05 1.40 30.14 16 8 O -0.62 -30.16 13.52 -3.99 -0.05 -30.21 16 9 N -0.64 -26.54 3.33 -829.01 -2.76 -29.30 16 10 C 0.11 3.56 6.57 86.85 0.57 4.13 16 11 C -0.11 -4.19 6.23 31.98 0.20 -3.99 16 12 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 13 O -0.59 -30.22 13.08 -148.98 -1.95 -32.16 16 14 C -0.56 -29.44 8.11 25.60 0.21 -29.24 16 15 H 0.07 3.45 7.77 -2.91 -0.02 3.42 16 16 C 0.02 1.30 5.27 84.66 0.45 1.75 16 17 N -0.92 -50.70 10.96 21.45 0.24 -50.46 16 18 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.15 7.48 5.39 86.67 0.47 7.95 16 23 C -0.10 -1.89 4.95 -19.87 -0.10 -1.99 16 24 C -0.12 -1.81 9.05 22.27 0.20 -1.61 16 25 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 26 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 27 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 28 C -0.12 -2.04 9.67 22.27 0.22 -1.82 16 29 H 0.21 6.90 7.80 -4.41 -0.03 6.87 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.41 9.29 5.36 -92.71 -0.50 8.79 16 33 H 0.10 2.37 7.30 -2.39 -0.02 2.35 16 34 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.08 3.01 8.03 -2.38 -0.02 2.99 16 36 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 37 H 0.38 20.33 7.24 -74.06 -0.54 19.79 16 38 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 39 H 0.02 1.36 8.00 -2.39 -0.02 1.34 16 40 H 0.03 1.55 7.81 -2.39 -0.02 1.53 16 41 H 0.13 1.69 6.93 -2.91 -0.02 1.67 16 42 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.13 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -70.90 374.40 1.40 -69.50 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.02 Total: 45.58 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.21 Total: 5.61 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.81 Total: -102.97 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -2.00 Total: -62.38 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.90 1.40 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826791632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.922 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds