Wall clock time and date at job start Tue Mar 31 2020 16:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 C 1.53001 * 109.47199 * 240.00596 * 2 1 3 5 5 N 1.46507 * 109.46730 * 294.99867 * 4 2 1 6 6 N 1.28437 * 125.19454 * 269.68922 * 5 4 2 7 7 C 1.30870 * 110.94612 * 179.85660 * 6 5 4 8 8 C 1.39650 * 107.87774 * 0.40758 * 7 6 5 9 9 C 1.36653 * 125.19672 * 90.00267 * 5 4 2 10 10 C 1.47001 * 126.89367 * 0.02562 * 9 5 4 11 11 O 1.21554 * 120.00076 * 180.02562 * 10 9 5 12 12 O 1.34824 * 120.00065 * 0.02562 * 10 9 5 13 13 C 1.45201 * 116.99976 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46869 * 180.02562 * 13 12 10 15 15 C 1.38628 * 119.74909 * 269.72911 * 14 13 12 16 16 C 1.37618 * 120.25021 * 179.72584 * 15 14 13 17 17 C 1.40720 * 119.74212 * 0.56739 * 16 15 14 18 18 C 1.41390 * 120.24440 * 179.68260 * 17 16 15 19 19 H 1.08003 * 120.00277 * 204.40877 * 18 17 16 20 20 C 1.39945 * 120.00049 * 24.41097 * 18 17 16 21 21 N 1.30818 * 120.00296 * 17.84482 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 197.84421 * 20 18 17 23 23 H 1.48500 * 109.47224 * 59.99849 * 22 20 18 24 24 H 1.48495 * 109.46879 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47050 * 299.99883 * 22 20 18 26 26 C 1.40719 * 119.51118 * 359.71014 * 17 16 15 27 27 C 1.37615 * 119.74413 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46474 * 299.99152 * 1 2 3 30 30 H 1.08994 * 109.47102 * 59.99594 * 1 2 3 31 31 H 1.08995 * 109.47620 * 120.00344 * 2 1 3 32 32 H 1.09008 * 109.46811 * 60.00420 * 3 2 1 33 33 H 1.08998 * 109.47424 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47491 * 300.00168 * 3 2 1 35 35 H 1.09002 * 109.46905 * 54.99374 * 4 2 1 36 36 H 1.08998 * 109.47442 * 174.99881 * 4 2 1 37 37 H 1.08004 * 126.06337 * 180.14647 * 7 6 5 38 38 H 1.08000 * 127.31881 * 179.74158 * 8 7 6 39 39 H 1.09001 * 109.47095 * 300.00453 * 13 12 10 40 40 H 1.09005 * 109.46721 * 60.00304 * 13 12 10 41 41 H 1.08002 * 119.88109 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.13250 * 180.27763 * 16 15 14 43 43 H 0.96997 * 120.00229 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.13122 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.87637 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6524 -2.1328 -1.1907 6 7 2.3560 -3.0726 -0.6697 7 6 1.7430 -4.2248 -0.7670 8 6 0.5286 -4.0103 -1.4223 9 6 0.4899 -2.6516 -1.6873 10 6 -0.5855 -1.9155 -2.3674 11 8 -1.5720 -2.5065 -2.7610 12 8 -0.4775 -0.5847 -2.5547 13 6 -1.5772 0.0767 -3.2342 14 6 -1.2813 1.5497 -3.3525 15 6 -1.6895 2.4159 -2.3502 16 6 -1.4198 3.7621 -2.4449 17 6 -0.7375 4.2599 -3.5705 18 6 -0.4609 5.6419 -3.6820 19 1 -0.3116 6.0861 -4.6551 20 6 -0.3803 6.4345 -2.5314 21 7 -0.2104 5.8740 -1.3616 22 14 -0.5154 8.2927 -2.6659 23 1 -1.8291 8.6520 -3.2578 24 1 -0.4003 8.8965 -1.3141 25 1 0.5753 8.8069 -3.5327 26 6 -0.3331 3.3720 -4.5846 27 6 -0.6078 2.0288 -4.4655 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6053 -0.2616 -2.1370 36 1 3.1263 -0.6442 -1.2953 37 1 2.1129 -5.1740 -0.4083 38 1 -0.2208 -4.7475 -1.6701 39 1 -1.6986 -0.3503 -4.2297 40 1 -2.4949 -0.0652 -2.6634 41 1 -2.2176 2.0325 -1.4896 42 1 -1.7348 4.4346 -1.6608 43 1 -0.1549 6.4233 -0.5641 44 1 0.1908 3.7432 -5.4530 45 1 -0.2980 1.3454 -5.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829656253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:38 Heat of formation + Delta-G solvation = -2.060727 kcal Electronic energy + Delta-G solvation = -28394.780456 eV Core-core repulsion = 24571.430804 eV Total energy + Delta-G solvation = -3823.349653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.62795 -39.93055 -37.77148 -36.65296 -35.91034 -33.95563 -32.05816 -31.31783 -30.62709 -29.46213 -27.38164 -27.00033 -26.51507 -24.49601 -23.10958 -21.73720 -21.19526 -20.55944 -20.14902 -19.92971 -18.00879 -17.46946 -16.72718 -16.56565 -15.82455 -15.46564 -15.33324 -15.02071 -14.51950 -14.04740 -13.79239 -13.73130 -13.58480 -13.44024 -12.93743 -12.79996 -12.52006 -12.42586 -12.11700 -11.97553 -11.84779 -11.70523 -11.24190 -11.20088 -11.10328 -11.10004 -10.87816 -10.83474 -10.60957 -10.52369 -10.39459 -10.12120 -9.79272 -9.55073 -9.29308 -9.24480 -9.06655 -7.65051 -7.54348 -6.94843 -4.54581 1.09337 2.28167 2.45987 2.54099 2.87620 2.92802 2.97131 2.99903 3.03155 3.25593 3.79360 4.39461 4.46869 4.75797 4.79072 4.94427 5.07319 5.25885 5.39865 5.49983 5.54043 5.56826 5.58369 5.60398 5.74018 5.77662 5.93278 5.98245 6.02784 6.11783 6.15718 6.22593 6.23991 6.39377 6.50849 6.56024 6.71096 6.73919 6.80304 6.89411 7.09297 7.17748 7.42749 7.64774 7.81889 7.87458 7.91917 8.04039 8.11041 8.45536 8.70531 8.78095 9.98362 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003357 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.696471 B = 8338.666390 C = 9236.099898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.252 5.252 6 N -0.270 5.270 7 C -0.013 4.013 8 C -0.161 4.161 9 C -0.023 4.023 10 C 0.533 3.467 11 O -0.503 6.503 12 O -0.344 6.344 13 C 0.134 3.866 14 C -0.238 4.238 15 C -0.073 4.073 16 C -0.169 4.169 17 C 0.121 3.879 18 C -0.455 4.455 19 H 0.080 0.920 20 C 0.077 3.923 21 N -0.782 5.782 22 Si 0.909 3.091 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.230 4.230 27 C -0.063 4.063 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.284 0.716 44 H 0.094 0.906 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -10.366 3.087 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.042 5.042 6 N -0.104 5.104 7 C -0.188 4.188 8 C -0.190 4.190 9 C -0.149 4.149 10 C 0.376 3.624 11 O -0.391 6.391 12 O -0.260 6.260 13 C 0.062 3.938 14 C -0.239 4.239 15 C -0.092 4.092 16 C -0.188 4.188 17 C 0.118 3.882 18 C -0.484 4.484 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.250 4.250 27 C -0.081 4.081 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.787 -9.770 3.573 11.071 hybrid contribution -0.797 0.351 -0.236 0.903 sum 2.990 -9.419 3.336 10.430 Atomic orbital electron populations 1.22217 0.94226 1.01122 1.04151 1.21365 0.97360 0.96998 0.96085 1.21745 1.00383 0.94043 1.03941 1.22539 1.02288 0.73347 1.02301 1.46105 1.11618 1.08502 1.37945 1.73169 1.22957 0.97278 1.17019 1.23555 0.94112 0.96644 1.04452 1.22160 1.00020 0.93201 1.03570 1.20867 0.90946 0.93851 1.09219 1.19744 0.84371 0.81884 0.76384 1.90855 1.30511 1.69864 1.47839 1.86893 1.48733 1.19626 1.70784 1.21811 0.86217 0.90422 0.95355 1.18611 1.15260 0.90363 0.99657 1.20503 0.98818 0.94053 0.95830 1.21279 1.02898 0.93811 1.00847 1.17665 0.87190 0.92774 0.90587 1.19665 1.41784 0.93045 0.93867 0.90233 1.25948 0.91990 1.01612 0.94739 1.69797 1.32612 1.38575 0.99602 0.86348 0.80200 0.81696 0.78471 1.18695 1.20194 1.18874 1.20957 1.09184 0.92719 1.02127 1.20388 0.96730 0.95145 0.95848 0.94200 0.92714 0.88836 0.91198 0.91849 0.92832 0.90727 0.86123 0.88207 0.79574 0.81902 0.91871 0.91758 0.89392 0.86293 0.90539 0.88815 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 7.66 37.16 0.28 -2.09 16 2 C -0.10 -1.32 3.13 -90.62 -0.28 -1.60 16 3 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 4 C 0.11 1.53 5.43 -4.04 -0.02 1.50 16 5 N -0.25 -3.58 3.18 -57.15 -0.18 -3.76 16 6 N -0.27 -3.72 11.90 30.58 0.36 -3.35 16 7 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 8 C -0.16 -2.05 10.85 -38.97 -0.42 -2.48 16 9 C -0.02 -0.35 5.70 -82.08 -0.47 -0.81 16 10 C 0.53 8.78 6.87 34.28 0.24 9.02 16 11 O -0.50 -9.15 16.71 -19.31 -0.32 -9.47 16 12 O -0.34 -5.71 4.47 -40.83 -0.18 -5.90 16 13 C 0.13 2.32 5.42 36.01 0.20 2.51 16 14 C -0.24 -4.71 5.35 -104.33 -0.56 -5.27 16 15 C -0.07 -1.55 9.00 -39.66 -0.36 -1.90 16 16 C -0.17 -4.00 8.70 -38.87 -0.34 -4.33 16 17 C 0.12 2.95 5.58 -106.82 -0.60 2.35 16 18 C -0.46 -11.17 9.05 -37.74 -0.34 -11.51 16 19 H 0.08 1.88 7.91 -52.48 -0.41 1.47 16 20 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 21 N -0.78 -18.50 10.95 55.55 0.61 -17.90 16 22 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.23 -5.20 9.80 -38.87 -0.38 -5.58 16 27 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 28 H 0.04 0.60 5.92 -51.93 -0.31 0.30 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.55 4.80 -51.93 -0.25 1.31 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.12 1.74 6.15 -51.93 -0.32 1.43 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 43 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 44 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 45 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -26.17 371.19 -8.78 -34.95 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.24 Total: 9.61 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.39 Total: -22.13 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.79 Total: -25.01 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.51 Total: -15.37 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -26.17 -8.78 -34.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829656253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.888 kcal (2) G-P(sol) polarization free energy of solvation -26.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds