Wall clock time and date at job start Tue Mar 31 2020 16:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 C 1.53001 * 109.47199 * 240.00596 * 2 1 3 5 5 N 1.46507 * 109.46730 * 294.99867 * 4 2 1 6 6 N 1.28437 * 125.19454 * 269.68922 * 5 4 2 7 7 C 1.30870 * 110.94612 * 179.85660 * 6 5 4 8 8 C 1.39650 * 107.87774 * 0.40758 * 7 6 5 9 9 C 1.36653 * 125.19672 * 90.00267 * 5 4 2 10 10 C 1.47001 * 126.89367 * 0.02562 * 9 5 4 11 11 O 1.21554 * 120.00076 * 180.02562 * 10 9 5 12 12 O 1.34824 * 120.00065 * 0.02562 * 10 9 5 13 13 C 1.45201 * 116.99976 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46869 * 180.02562 * 13 12 10 15 15 C 1.38628 * 119.74909 * 269.72911 * 14 13 12 16 16 C 1.37618 * 120.25021 * 179.72584 * 15 14 13 17 17 C 1.40720 * 119.74212 * 0.56739 * 16 15 14 18 18 C 1.41390 * 120.24440 * 179.68260 * 17 16 15 19 19 H 1.08003 * 120.00277 * 204.40877 * 18 17 16 20 20 C 1.39945 * 120.00049 * 24.41097 * 18 17 16 21 21 N 1.30818 * 120.00296 * 17.84482 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 197.84421 * 20 18 17 23 23 H 1.48500 * 109.47224 * 59.99849 * 22 20 18 24 24 H 1.48495 * 109.46879 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47050 * 299.99883 * 22 20 18 26 26 C 1.40719 * 119.51118 * 359.71014 * 17 16 15 27 27 C 1.37615 * 119.74413 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46474 * 299.99152 * 1 2 3 30 30 H 1.08994 * 109.47102 * 59.99594 * 1 2 3 31 31 H 1.08995 * 109.47620 * 120.00344 * 2 1 3 32 32 H 1.09008 * 109.46811 * 60.00420 * 3 2 1 33 33 H 1.08998 * 109.47424 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47491 * 300.00168 * 3 2 1 35 35 H 1.09002 * 109.46905 * 54.99374 * 4 2 1 36 36 H 1.08998 * 109.47442 * 174.99881 * 4 2 1 37 37 H 1.08004 * 126.06337 * 180.14647 * 7 6 5 38 38 H 1.08000 * 127.31881 * 179.74158 * 8 7 6 39 39 H 1.09001 * 109.47095 * 300.00453 * 13 12 10 40 40 H 1.09005 * 109.46721 * 60.00304 * 13 12 10 41 41 H 1.08002 * 119.88109 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.13250 * 180.27763 * 16 15 14 43 43 H 0.96997 * 120.00229 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.13122 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.87637 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6524 -2.1328 -1.1907 6 7 2.3560 -3.0726 -0.6697 7 6 1.7430 -4.2248 -0.7670 8 6 0.5286 -4.0103 -1.4223 9 6 0.4899 -2.6516 -1.6873 10 6 -0.5855 -1.9155 -2.3674 11 8 -1.5720 -2.5065 -2.7610 12 8 -0.4775 -0.5847 -2.5547 13 6 -1.5772 0.0767 -3.2342 14 6 -1.2813 1.5497 -3.3525 15 6 -1.6895 2.4159 -2.3502 16 6 -1.4198 3.7621 -2.4449 17 6 -0.7375 4.2599 -3.5705 18 6 -0.4609 5.6419 -3.6820 19 1 -0.3116 6.0861 -4.6551 20 6 -0.3803 6.4345 -2.5314 21 7 -0.2104 5.8740 -1.3616 22 14 -0.5154 8.2927 -2.6659 23 1 -1.8291 8.6520 -3.2578 24 1 -0.4003 8.8965 -1.3141 25 1 0.5753 8.8069 -3.5327 26 6 -0.3331 3.3720 -4.5846 27 6 -0.6078 2.0288 -4.4655 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6053 -0.2616 -2.1370 36 1 3.1263 -0.6442 -1.2953 37 1 2.1129 -5.1740 -0.4083 38 1 -0.2208 -4.7475 -1.6701 39 1 -1.6986 -0.3503 -4.2297 40 1 -2.4949 -0.0652 -2.6634 41 1 -2.2176 2.0325 -1.4896 42 1 -1.7348 4.4346 -1.6608 43 1 -0.1549 6.4233 -0.5641 44 1 0.1908 3.7432 -5.4530 45 1 -0.2980 1.3454 -5.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829656253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:36 Heat of formation + Delta-G solvation = -11.948980 kcal Electronic energy + Delta-G solvation = -28395.209243 eV Core-core repulsion = 24571.430804 eV Total energy + Delta-G solvation = -3823.778440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.66251 -41.26888 -39.45370 -37.88945 -37.18043 -35.66717 -33.13012 -32.70334 -31.99196 -31.20051 -28.97918 -28.18221 -27.57987 -26.00369 -24.48549 -22.94129 -22.73394 -21.84460 -21.67098 -21.11047 -19.25263 -19.14065 -18.07044 -17.82466 -17.23647 -16.84925 -16.58863 -16.10535 -15.96211 -15.63329 -15.39138 -14.89238 -14.70363 -14.56056 -14.33660 -14.06671 -14.00681 -13.83747 -13.73056 -13.54096 -13.13348 -12.91902 -12.82117 -12.69908 -12.61223 -12.32719 -12.20747 -12.08722 -11.98761 -11.77793 -11.66657 -11.55322 -11.37587 -11.26695 -11.01911 -10.32056 -10.06867 -9.39880 -9.30331 -8.67075 -6.37141 -0.05846 0.72259 1.14681 1.34909 1.39620 1.45340 1.50271 1.54334 1.81019 1.87721 2.19686 2.72409 3.38642 3.57123 3.69575 3.77444 3.92753 3.97559 4.08520 4.12102 4.20305 4.37937 4.42192 4.50295 4.51823 4.56880 4.57276 4.66572 4.75306 4.83348 4.89230 4.98644 5.03708 5.09934 5.13439 5.22965 5.33220 5.34459 5.42165 5.45058 5.51980 5.67286 5.68331 5.91007 6.08011 6.17424 6.35057 6.53918 6.67066 6.91308 6.99568 7.00238 8.28245 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003357 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.696471 B = 8338.666390 C = 9236.099898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.116 3.884 5 N -0.258 5.258 6 N -0.283 5.283 7 C -0.002 4.002 8 C -0.153 4.153 9 C -0.050 4.050 10 C 0.537 3.463 11 O -0.524 6.524 12 O -0.343 6.343 13 C 0.138 3.862 14 C -0.224 4.224 15 C -0.072 4.072 16 C -0.189 4.189 17 C 0.093 3.907 18 C -0.494 4.494 19 H 0.076 0.924 20 C 0.040 3.960 21 N -0.810 5.810 22 Si 0.977 3.023 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.244 4.244 27 C -0.063 4.063 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.227 0.773 38 H 0.181 0.819 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.290 0.710 44 H 0.098 0.902 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -12.134 3.589 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 C -0.194 4.194 4 C -0.004 4.004 5 N -0.048 5.048 6 N -0.117 5.117 7 C -0.176 4.176 8 C -0.182 4.182 9 C -0.175 4.175 10 C 0.381 3.619 11 O -0.413 6.413 12 O -0.259 6.259 13 C 0.066 3.934 14 C -0.225 4.225 15 C -0.090 4.090 16 C -0.208 4.208 17 C 0.091 3.909 18 C -0.522 4.522 19 H 0.094 0.906 20 C -0.177 4.177 21 N -0.435 5.435 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.192 1.192 25 H -0.184 1.184 26 C -0.264 4.264 27 C -0.081 4.081 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.243 0.757 38 H 0.198 0.802 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.535 -11.548 4.073 13.058 hybrid contribution -1.017 0.657 -0.374 1.267 sum 3.518 -10.892 3.698 12.028 Atomic orbital electron populations 1.22135 0.95415 1.00454 1.03202 1.21273 0.96204 0.96806 0.96611 1.21662 1.01588 0.93879 1.02297 1.22489 1.03171 0.73292 1.01405 1.46108 1.11530 1.08686 1.38458 1.73183 1.23333 0.97920 1.17265 1.24232 0.93141 0.97353 1.02865 1.22539 1.00689 0.92531 1.02430 1.20889 0.91158 0.94707 1.10721 1.19956 0.84561 0.81397 0.75941 1.90841 1.31437 1.70037 1.48965 1.86880 1.48098 1.20204 1.70722 1.21666 0.86594 0.88844 0.96285 1.18832 1.13239 0.91776 0.98633 1.20664 0.98434 0.93312 0.96592 1.21212 1.04183 0.94708 1.00728 1.17967 0.87980 0.93469 0.91520 1.19884 1.44090 0.93844 0.94422 0.90559 1.26683 0.91122 1.05781 0.94066 1.69843 1.33186 1.40218 1.00235 0.85326 0.79989 0.76182 0.78741 1.18689 1.19173 1.18448 1.21126 1.09635 0.93559 1.02066 1.20663 0.96089 0.94764 0.96616 0.94615 0.92594 0.90771 0.90306 0.92010 0.90863 0.93744 0.87606 0.86514 0.75670 0.80155 0.90741 0.91147 0.87902 0.87968 0.89951 0.88377 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 7.66 71.98 0.55 -3.99 16 2 C -0.09 -2.31 3.13 -10.79 -0.03 -2.34 16 3 C -0.14 -3.65 9.19 71.98 0.66 -2.99 16 4 C 0.12 2.95 5.43 86.38 0.47 3.42 16 5 N -0.26 -6.85 3.18 -334.73 -1.06 -7.92 16 6 N -0.28 -7.01 11.90 -57.15 -0.68 -7.69 16 7 C 0.00 -0.03 12.03 85.18 1.02 0.99 16 8 C -0.15 -3.47 10.85 22.67 0.25 -3.23 16 9 C -0.05 -1.40 5.70 40.75 0.23 -1.16 16 10 C 0.54 17.05 6.87 70.12 0.48 17.53 16 11 O -0.52 -18.37 16.71 19.66 0.33 -18.04 16 12 O -0.34 -11.12 4.47 -57.37 -0.26 -11.38 16 13 C 0.14 4.64 5.42 71.24 0.39 5.02 16 14 C -0.22 -8.78 5.35 -19.68 -0.11 -8.89 16 15 C -0.07 -3.05 9.00 22.22 0.20 -2.86 16 16 C -0.19 -9.27 8.70 22.73 0.20 -9.07 16 17 C 0.09 4.73 5.58 -21.29 -0.12 4.61 16 18 C -0.49 -25.21 9.05 23.46 0.21 -25.00 16 19 H 0.08 3.77 7.91 -2.91 -0.02 3.75 16 20 C 0.04 1.92 5.14 85.26 0.44 2.35 16 21 N -0.81 -39.60 10.95 21.83 0.24 -39.36 16 22 Si 0.98 36.20 29.60 68.60 2.03 38.23 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 24 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 26 C -0.24 -11.24 9.80 22.73 0.22 -11.02 16 27 C -0.06 -2.56 9.67 22.22 0.21 -2.35 16 28 H 0.03 1.05 5.92 -2.38 -0.01 1.04 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.47 4.80 -2.39 -0.01 2.46 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 3.02 6.15 -2.39 -0.01 3.01 16 36 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.23 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 40 H 0.07 2.29 8.08 -2.38 -0.02 2.28 16 41 H 0.10 4.00 8.06 -2.91 -0.02 3.98 16 42 H 0.10 5.29 6.16 -2.91 -0.02 5.27 16 43 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 44 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -57.43 371.19 6.88 -50.55 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 1.00 Total: 34.56 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 5.28 Total: -38.96 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.50 Total: -54.97 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: 0.07 Total: -29.42 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -57.43 6.88 -50.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829656253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.602 kcal (2) G-P(sol) polarization free energy of solvation -57.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds