Wall clock time and date at job start Tue Mar 31 2020 16:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46508 * 2 1 4 4 C 1.52997 * 109.47122 * 119.99521 * 2 1 3 5 5 C 1.50707 * 109.46892 * 175.00169 * 4 2 1 6 6 O 1.21273 * 119.99863 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99717 * 180.02562 * 5 4 2 8 8 C 1.43521 * 119.01092 * 180.02562 * 7 5 4 9 9 C 1.53800 * 107.93423 * 273.72044 * 8 7 5 10 10 C 1.47144 * 111.77574 * 281.56181 * 9 8 7 11 11 N 1.48205 * 110.34272 * 58.33108 * 10 9 8 12 12 C 1.34780 * 119.97247 * 102.46270 * 11 10 9 13 13 O 1.21278 * 119.99798 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00096 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47141 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00468 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99327 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47017 * 89.99999 * 20 18 16 22 22 H 1.48500 * 109.46939 * 209.99761 * 20 18 16 23 23 H 1.48499 * 109.47449 * 329.99856 * 20 18 16 24 24 C 1.43624 * 120.06023 * 282.48235 * 11 10 9 25 25 C 1.48854 * 118.94140 * 359.97438 * 7 5 4 26 26 H 1.09000 * 109.47407 * 299.99591 * 1 2 3 27 27 H 1.09000 * 109.47416 * 60.00101 * 1 2 3 28 28 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46980 * 240.00282 * 2 1 3 30 30 H 1.08994 * 109.47270 * 60.00459 * 3 2 1 31 31 H 1.09006 * 109.46632 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47420 * 299.99526 * 3 2 1 33 33 H 1.09006 * 109.47130 * 55.00814 * 4 2 1 34 34 H 1.08997 * 109.47796 * 295.00543 * 4 2 1 35 35 H 1.08996 * 109.84040 * 154.07536 * 8 7 5 36 36 H 1.08999 * 109.71890 * 33.28902 * 8 7 5 37 37 H 1.09002 * 109.00960 * 160.99168 * 9 8 7 38 38 H 1.09002 * 109.00466 * 42.12516 * 9 8 7 39 39 H 1.08996 * 109.32175 * 178.60022 * 10 9 8 40 40 H 1.08999 * 109.32157 * 298.06426 * 10 9 8 41 41 H 1.09005 * 109.47409 * 299.99915 * 14 12 11 42 42 H 1.08994 * 109.47147 * 60.00541 * 14 12 11 43 43 H 0.97003 * 119.99639 * 179.97438 * 19 18 16 44 44 H 1.09002 * 108.87474 * 211.45436 * 24 11 10 45 45 H 1.09005 * 108.87368 * 329.99488 * 24 11 10 46 46 H 1.09000 * 109.48102 * 20.64318 * 25 7 5 47 47 H 1.09004 * 109.49239 * 260.61094 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.8292 1.1889 6 8 4.1450 -0.3739 0.2404 7 7 4.2149 -1.4319 2.1891 8 6 5.6451 -1.5226 2.1101 9 6 5.9959 -2.7879 1.3092 10 6 5.8712 -4.0042 2.1279 11 7 4.4925 -4.1301 2.6568 12 6 3.6289 -4.9940 2.0871 13 8 3.9804 -5.6682 1.1423 14 6 2.2271 -5.1229 2.6248 15 16 1.3201 -6.3538 1.6561 16 6 -0.2382 -6.3016 2.4768 17 1 -0.3855 -5.6351 3.3138 18 6 -1.2762 -7.1170 2.0477 19 7 -1.0967 -7.9289 1.0274 20 14 -2.9280 -7.0621 2.9184 21 1 -3.7936 -6.0422 2.2738 22 1 -3.5798 -8.3934 2.8277 23 1 -2.7236 -6.7073 4.3458 24 6 4.0755 -3.3320 3.7758 25 6 3.4511 -1.9820 3.3422 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 6.0673 -1.5921 3.1126 36 1 6.0419 -0.6434 1.6025 37 1 7.0211 -2.7066 0.9480 38 1 5.3237 -2.8648 0.4546 39 1 6.1039 -4.8759 1.5164 40 1 6.5734 -3.9525 2.9599 41 1 2.2654 -5.4381 3.6676 42 1 1.7210 -4.1601 2.5546 43 1 -1.8220 -8.4990 0.7278 44 1 3.3398 -3.8916 4.3534 45 1 4.9408 -3.1313 4.4076 46 1 2.4131 -2.1391 3.0489 47 1 3.4913 -1.2785 4.1739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830687564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:34 Heat of formation + Delta-G solvation = -75.400595 kcal Electronic energy + Delta-G solvation = -27346.869324 eV Core-core repulsion = 23655.783367 eV Total energy + Delta-G solvation = -3691.085957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79026 -39.40668 -37.14413 -35.58396 -34.41989 -33.66521 -32.46674 -29.46211 -29.10117 -28.01194 -27.09013 -25.91045 -25.47748 -23.22015 -22.30091 -20.39317 -19.33861 -18.71434 -17.79169 -17.29860 -16.78919 -16.54744 -16.02419 -15.69201 -15.01807 -14.84043 -14.69147 -14.27768 -14.11244 -13.88003 -13.80735 -13.49672 -13.40878 -13.04103 -12.76659 -12.62200 -12.37273 -12.22202 -12.06686 -11.99392 -11.81171 -11.56986 -11.31068 -11.11234 -11.09414 -11.06549 -10.99861 -10.82932 -10.78332 -10.67842 -9.84783 -9.68633 -9.41575 -9.10365 -8.83605 -8.55773 -8.26476 -6.54583 -6.25148 -3.96369 2.60728 2.75709 2.96966 3.01047 3.19169 3.23545 3.27309 3.54751 4.16306 4.34739 4.49242 4.65002 4.73785 4.74862 4.87807 4.89405 4.99485 5.10079 5.11410 5.22484 5.25575 5.29398 5.34760 5.43204 5.48424 5.50429 5.58334 5.60641 5.64108 5.67202 5.72496 5.81825 5.86548 5.92390 6.01525 6.03829 6.13181 6.16440 6.34748 6.39029 6.51994 6.62587 7.20435 7.51418 7.55449 8.16536 8.30886 8.50262 9.20088 10.82215 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.004301 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.702619 B = 6508.717049 C = 8269.792424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.140 4.140 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.607 5.607 8 C 0.122 3.878 9 C -0.157 4.157 10 C 0.119 3.881 11 N -0.611 5.611 12 C 0.533 3.467 13 O -0.512 6.512 14 C -0.150 4.150 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.917 3.083 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.099 3.901 25 C 0.083 3.917 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.269 0.731 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.412 16.696 7.250 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.414 6.414 7 N -0.341 5.341 8 C -0.001 4.001 9 C -0.196 4.196 10 C -0.003 4.003 11 N -0.346 5.346 12 C 0.321 3.679 13 O -0.385 6.385 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.743 3.257 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.027 4.027 25 C -0.041 4.041 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.205 15.769 5.235 20.040 hybrid contribution -1.556 0.768 1.829 2.521 sum 9.650 16.537 7.065 20.408 Atomic orbital electron populations 1.21872 0.94765 1.02397 1.01666 1.20849 0.95306 0.96491 0.97262 1.21946 1.02809 0.95230 1.00793 1.21855 0.91985 1.03302 1.00807 1.20797 0.90418 0.76794 0.81654 1.90640 1.70415 1.47863 1.32476 1.47755 1.06848 1.57833 1.21624 1.21010 0.80602 0.98288 1.00233 1.21521 1.02740 0.95106 1.00269 1.20621 0.82204 0.99215 0.98224 1.47559 1.12688 1.40715 1.33658 1.20387 0.86485 0.78482 0.82595 1.90698 1.77503 1.43618 1.26722 1.23573 0.95227 1.06265 1.05012 1.85492 1.08465 1.47224 1.42105 1.22834 0.97548 1.28271 1.19739 0.90968 1.24978 0.98912 0.94498 0.95066 1.70014 1.32974 1.22834 1.24346 0.86193 0.82123 0.77735 0.79609 1.20244 1.20745 1.19679 1.21561 1.01146 0.91168 0.88867 1.23105 0.96875 0.95253 0.88859 0.92805 0.92501 0.92038 0.90415 0.93596 0.90964 0.93079 0.88475 0.89145 0.90724 0.89939 0.90290 0.90847 0.89063 0.91347 0.89247 0.89644 0.92146 0.88880 0.90339 0.89234 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 2 C -0.08 -0.95 2.57 -90.62 -0.23 -1.19 16 3 C -0.15 -1.67 8.93 37.16 0.33 -1.34 16 4 C -0.14 -1.58 3.55 -27.88 -0.10 -1.68 16 5 C 0.51 6.70 7.10 -10.98 -0.08 6.62 16 6 O -0.54 -8.55 13.47 5.56 0.07 -8.48 16 7 N -0.61 -6.51 2.50 -172.36 -0.43 -6.94 16 8 C 0.12 1.19 5.34 -5.20 -0.03 1.16 16 9 C -0.16 -1.75 5.64 -29.13 -0.16 -1.92 16 10 C 0.12 1.36 5.69 -5.92 -0.03 1.33 16 11 N -0.61 -7.96 2.46 -176.62 -0.43 -8.39 16 12 C 0.53 9.70 7.69 -10.99 -0.08 9.62 16 13 O -0.51 -11.56 15.30 5.56 0.09 -11.47 16 14 C -0.15 -2.87 4.71 36.00 0.17 -2.70 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 17 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 20 Si 0.92 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 C 0.10 0.89 5.05 -4.54 -0.02 0.87 16 25 C 0.08 0.70 6.51 -1.72 -0.01 0.69 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.09 7.95 -51.93 -0.41 0.67 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.07 0.54 7.58 -51.93 -0.39 0.14 16 36 H 0.08 0.87 7.41 -51.93 -0.38 0.49 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 39 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.09 1.55 7.37 -51.91 -0.38 1.17 16 42 H 0.09 1.47 7.32 -51.92 -0.38 1.09 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 0.81 6.38 -51.93 -0.33 0.48 16 45 H 0.08 0.51 7.72 -51.93 -0.40 0.11 16 46 H 0.09 0.80 5.27 -51.93 -0.27 0.53 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -35.23 379.97 -8.97 -44.20 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.77 Total: 0.54 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 0.29 Total: -2.24 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.13 Total: -40.30 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.16 Total: -19.95 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.23 -8.97 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830687564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.199 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds