Wall clock time and date at job start Tue Mar 31 2020 16:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46508 * 2 1 4 4 C 1.52997 * 109.47122 * 119.99521 * 2 1 3 5 5 C 1.50707 * 109.46892 * 175.00169 * 4 2 1 6 6 O 1.21273 * 119.99863 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99717 * 180.02562 * 5 4 2 8 8 C 1.43521 * 119.01092 * 180.02562 * 7 5 4 9 9 C 1.53800 * 107.93423 * 273.72044 * 8 7 5 10 10 C 1.47144 * 111.77574 * 281.56181 * 9 8 7 11 11 N 1.48205 * 110.34272 * 58.33108 * 10 9 8 12 12 C 1.34780 * 119.97247 * 102.46270 * 11 10 9 13 13 O 1.21278 * 119.99798 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00096 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47141 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00468 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99327 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47017 * 89.99999 * 20 18 16 22 22 H 1.48500 * 109.46939 * 209.99761 * 20 18 16 23 23 H 1.48499 * 109.47449 * 329.99856 * 20 18 16 24 24 C 1.43624 * 120.06023 * 282.48235 * 11 10 9 25 25 C 1.48854 * 118.94140 * 359.97438 * 7 5 4 26 26 H 1.09000 * 109.47407 * 299.99591 * 1 2 3 27 27 H 1.09000 * 109.47416 * 60.00101 * 1 2 3 28 28 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46980 * 240.00282 * 2 1 3 30 30 H 1.08994 * 109.47270 * 60.00459 * 3 2 1 31 31 H 1.09006 * 109.46632 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47420 * 299.99526 * 3 2 1 33 33 H 1.09006 * 109.47130 * 55.00814 * 4 2 1 34 34 H 1.08997 * 109.47796 * 295.00543 * 4 2 1 35 35 H 1.08996 * 109.84040 * 154.07536 * 8 7 5 36 36 H 1.08999 * 109.71890 * 33.28902 * 8 7 5 37 37 H 1.09002 * 109.00960 * 160.99168 * 9 8 7 38 38 H 1.09002 * 109.00466 * 42.12516 * 9 8 7 39 39 H 1.08996 * 109.32175 * 178.60022 * 10 9 8 40 40 H 1.08999 * 109.32157 * 298.06426 * 10 9 8 41 41 H 1.09005 * 109.47409 * 299.99915 * 14 12 11 42 42 H 1.08994 * 109.47147 * 60.00541 * 14 12 11 43 43 H 0.97003 * 119.99639 * 179.97438 * 19 18 16 44 44 H 1.09002 * 108.87474 * 211.45436 * 24 11 10 45 45 H 1.09005 * 108.87368 * 329.99488 * 24 11 10 46 46 H 1.09000 * 109.48102 * 20.64318 * 25 7 5 47 47 H 1.09004 * 109.49239 * 260.61094 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.8292 1.1889 6 8 4.1450 -0.3739 0.2404 7 7 4.2149 -1.4319 2.1891 8 6 5.6451 -1.5226 2.1101 9 6 5.9959 -2.7879 1.3092 10 6 5.8712 -4.0042 2.1279 11 7 4.4925 -4.1301 2.6568 12 6 3.6289 -4.9940 2.0871 13 8 3.9804 -5.6682 1.1423 14 6 2.2271 -5.1229 2.6248 15 16 1.3201 -6.3538 1.6561 16 6 -0.2382 -6.3016 2.4768 17 1 -0.3855 -5.6351 3.3138 18 6 -1.2762 -7.1170 2.0477 19 7 -1.0967 -7.9289 1.0274 20 14 -2.9280 -7.0621 2.9184 21 1 -3.7936 -6.0422 2.2738 22 1 -3.5798 -8.3934 2.8277 23 1 -2.7236 -6.7073 4.3458 24 6 4.0755 -3.3320 3.7758 25 6 3.4511 -1.9820 3.3422 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 6.0673 -1.5921 3.1126 36 1 6.0419 -0.6434 1.6025 37 1 7.0211 -2.7066 0.9480 38 1 5.3237 -2.8648 0.4546 39 1 6.1039 -4.8759 1.5164 40 1 6.5734 -3.9525 2.9599 41 1 2.2654 -5.4381 3.6676 42 1 1.7210 -4.1601 2.5546 43 1 -1.8220 -8.4990 0.7278 44 1 3.3398 -3.8916 4.3534 45 1 4.9408 -3.1313 4.4076 46 1 2.4131 -2.1391 3.0489 47 1 3.4913 -1.2785 4.1739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830687564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:33 Heat of formation + Delta-G solvation = -98.093185 kcal Electronic energy + Delta-G solvation = -27347.853348 eV Core-core repulsion = 23655.783367 eV Total energy + Delta-G solvation = -3692.069981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.78616 -40.60426 -38.27569 -36.56173 -35.49086 -34.58408 -34.56117 -30.85680 -30.02008 -28.98898 -27.97418 -27.66041 -26.71489 -24.16971 -23.28674 -21.30323 -20.54031 -19.93846 -19.28994 -18.46479 -17.79307 -17.74423 -16.97792 -16.86447 -16.81082 -16.27160 -15.86125 -15.67147 -15.11526 -14.88950 -14.85740 -14.66245 -14.51378 -14.34273 -13.85368 -13.77659 -13.45076 -13.23486 -13.14207 -13.08630 -12.91295 -12.88316 -12.75258 -12.59825 -12.40782 -12.14295 -12.03037 -11.92368 -11.73557 -11.68329 -11.61439 -11.12115 -10.88571 -10.68240 -10.23064 -9.84676 -9.51408 -8.65795 -8.32285 -6.10705 1.27152 1.44226 1.47729 1.56265 1.58871 1.63847 1.99089 2.22888 2.29330 3.02632 3.28373 3.50267 3.66950 3.81491 3.88167 3.92509 3.97027 3.98902 4.13523 4.25819 4.27507 4.35736 4.43725 4.52130 4.58017 4.59521 4.61695 4.70584 4.72318 4.79207 4.81321 4.82547 4.86356 4.99664 5.00528 5.10968 5.21008 5.26331 5.41072 5.44163 5.48385 5.58990 5.74460 6.22016 6.28057 6.38437 7.09317 7.16296 7.22683 8.76969 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.004301 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.702619 B = 6508.717049 C = 8269.792424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.135 4.135 5 C 0.504 3.496 6 O -0.577 6.577 7 N -0.605 5.605 8 C 0.124 3.876 9 C -0.149 4.149 10 C 0.119 3.881 11 N -0.596 5.596 12 C 0.528 3.472 13 O -0.570 6.570 14 C -0.120 4.120 15 S -0.161 6.161 16 C -0.539 4.539 17 H 0.087 0.913 18 C 0.014 3.986 19 N -0.914 5.914 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.253 1.253 24 C 0.085 3.915 25 C 0.080 3.920 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.269 0.731 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 19.064 11.437 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.200 4.200 4 C -0.175 4.175 5 C 0.293 3.707 6 O -0.457 6.457 7 N -0.337 5.337 8 C 0.001 3.999 9 C -0.188 4.188 10 C -0.002 4.002 11 N -0.329 5.329 12 C 0.316 3.684 13 O -0.449 6.449 14 C -0.271 4.271 15 S 0.066 5.934 16 C -0.687 4.687 17 H 0.105 0.895 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.177 1.177 24 C -0.039 4.039 25 C -0.042 4.042 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.139 0.861 46 H 0.100 0.900 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.114 18.175 9.494 23.324 hybrid contribution -1.365 0.102 0.546 1.474 sum 9.749 18.277 10.041 23.020 Atomic orbital electron populations 1.21828 0.93687 1.01775 1.02895 1.20832 0.96146 0.96865 0.96341 1.21852 1.01433 0.94730 1.01958 1.21849 0.90923 1.02998 1.01701 1.21146 0.91127 0.76741 0.81644 1.90624 1.71208 1.49798 1.34052 1.47885 1.07425 1.56794 1.21624 1.21107 0.80186 0.96619 1.01998 1.21449 1.02601 0.96102 0.98695 1.20785 0.81942 0.97907 0.99583 1.47565 1.12401 1.39316 1.33616 1.20309 0.86733 0.79147 0.82208 1.90682 1.78386 1.46430 1.29388 1.23375 0.94982 1.04343 1.04432 1.85768 1.10764 1.51227 1.45610 1.23174 0.97406 1.28324 1.19768 0.89464 1.26114 1.03386 0.93872 0.95724 1.70199 1.34360 1.24100 1.26424 0.84983 0.76418 0.77745 0.79046 1.19389 1.20733 1.17689 1.22017 1.03449 0.90800 0.87651 1.23352 0.96044 0.95714 0.89107 0.90755 0.92094 0.93534 0.93889 0.91512 0.92960 0.92772 0.89620 0.85955 0.86443 0.91011 0.88419 0.96103 0.92130 0.86518 0.86822 0.87529 0.92157 0.88000 0.86055 0.89951 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.08 -1.98 2.57 -10.79 -0.03 -2.01 16 3 C -0.14 -3.07 8.93 71.98 0.64 -2.43 16 4 C -0.14 -2.93 3.55 29.85 0.11 -2.83 16 5 C 0.50 12.85 7.10 87.66 0.62 13.47 16 6 O -0.58 -19.01 13.47 -3.01 -0.04 -19.05 16 7 N -0.61 -11.44 2.50 -817.62 -2.05 -13.49 16 8 C 0.12 2.06 5.34 87.20 0.47 2.52 16 9 C -0.15 -3.19 5.64 29.04 0.16 -3.02 16 10 C 0.12 2.50 5.69 84.23 0.48 2.98 16 11 N -0.60 -14.22 2.46 -831.09 -2.04 -16.26 16 12 C 0.53 19.25 7.69 87.66 0.67 19.92 16 13 O -0.57 -27.11 15.30 -3.02 -0.05 -27.16 16 14 C -0.12 -4.50 4.71 71.23 0.34 -4.17 16 15 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 16 C -0.54 -29.66 9.50 67.95 0.65 -29.01 16 17 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 20 Si 1.00 42.33 29.55 68.60 2.03 44.35 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 C 0.08 1.12 5.05 87.57 0.44 1.56 16 25 C 0.08 0.99 6.51 86.59 0.56 1.55 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 1.30 7.95 -2.39 -0.02 1.28 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.36 5.95 -2.38 -0.01 1.34 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 2.06 7.40 -2.38 -0.02 2.04 16 34 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 35 H 0.12 0.99 7.58 -2.39 -0.02 0.97 16 36 H 0.07 1.40 7.41 -2.39 -0.02 1.38 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.02 0.66 7.89 -2.39 -0.02 0.64 16 39 H 0.06 1.69 7.12 -2.39 -0.02 1.67 16 40 H 0.12 1.41 8.05 -2.39 -0.02 1.39 16 41 H 0.11 3.69 7.37 -2.39 -0.02 3.68 16 42 H 0.11 3.52 7.32 -2.40 -0.02 3.50 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.10 1.26 6.38 -2.39 -0.02 1.24 16 45 H 0.12 0.70 7.72 -2.38 -0.02 0.68 16 46 H 0.08 1.17 5.27 -2.39 -0.01 1.16 16 47 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -84.83 379.97 4.17 -80.67 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.95 Total: 18.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.24 Total: -2.59 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.80 Total: -85.26 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.09 Total: -46.20 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -84.83 4.17 -80.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830687564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.427 kcal (2) G-P(sol) polarization free energy of solvation -84.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds