Wall clock time and date at job start Tue Mar 31 2020 15:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47104 * 2 1 4 4 N 1.30251 * 125.61451 * 90.00469 * 3 2 1 5 5 C 1.34485 * 108.69727 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.16133 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47279 * 275.02505 * 6 5 4 8 8 C 1.34781 * 120.00263 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99715 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00103 * 180.02562 * 8 7 6 11 11 C 1.52999 * 109.46629 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47442 * 54.06116 * 11 10 8 13 13 C 1.50700 * 109.47616 * 294.05384 * 11 10 8 14 14 H 1.08004 * 119.99702 * 330.31700 * 13 11 10 15 15 C 1.37871 * 120.00278 * 150.30886 * 13 11 10 16 16 N 1.31520 * 119.99865 * 6.29736 * 15 13 11 17 17 Si 1.86797 * 120.00267 * 186.57175 * 15 13 11 18 18 H 1.48497 * 109.47344 * 179.72566 * 17 15 13 19 19 H 1.48505 * 109.46982 * 299.72655 * 17 15 13 20 20 H 1.48496 * 109.47263 * 59.72097 * 17 15 13 21 21 C 1.50703 * 109.46564 * 174.05717 * 11 10 8 22 22 C 1.38234 * 120.00036 * 64.22663 * 21 11 10 23 23 C 1.38241 * 119.99515 * 179.78899 * 22 21 11 24 24 C 1.38231 * 120.00410 * 0.43243 * 23 22 21 25 25 C 1.38237 * 119.99893 * 359.81688 * 24 23 22 26 26 C 1.38237 * 119.99806 * 244.49330 * 21 11 10 27 27 C 1.34324 * 107.66955 * 0.26404 * 5 4 3 28 28 O 1.33964 * 125.61993 * 269.96189 * 3 2 1 29 29 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46375 * 299.99557 * 1 2 3 31 31 H 1.09002 * 109.47009 * 59.99845 * 1 2 3 32 32 H 1.09001 * 109.47118 * 240.00463 * 2 1 3 33 33 H 1.09000 * 109.47664 * 120.00504 * 2 1 3 34 34 H 1.09001 * 109.46651 * 155.02782 * 6 5 4 35 35 H 1.09000 * 109.47215 * 35.02954 * 6 5 4 36 36 H 0.96999 * 120.00038 * 0.02562 * 7 6 5 37 37 H 1.09001 * 109.47147 * 60.00090 * 10 8 7 38 38 H 1.09000 * 109.46973 * 300.00105 * 10 8 7 39 39 H 0.96993 * 119.99759 * 355.06547 * 16 15 13 40 40 H 1.07994 * 120.00247 * 359.97438 * 22 21 11 41 41 H 1.08002 * 119.99674 * 180.27316 * 23 22 21 42 42 H 1.07998 * 120.00285 * 179.83231 * 24 23 22 43 43 H 1.08003 * 120.00306 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.00144 * 359.97438 * 26 21 11 45 45 H 1.07999 * 126.44756 * 179.73333 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7147 3.3488 0.6675 6 6 3.1160 4.4848 1.5728 7 7 1.9247 5.2434 1.9621 8 6 2.0421 6.3122 2.7748 9 8 3.1338 6.6456 3.1842 10 6 0.8165 7.0921 3.1757 11 6 1.2241 8.2454 4.0946 12 1 1.9953 8.8426 3.6081 13 6 1.7601 7.6909 5.3893 14 1 1.3980 6.7442 5.7623 15 6 2.7129 8.3920 6.0976 16 7 3.0637 9.5991 5.7109 17 14 3.5110 7.6244 7.6020 18 1 4.4991 8.5726 8.1762 19 1 2.4684 7.3219 8.6153 20 1 4.1998 6.3685 7.2104 21 6 0.0230 9.1105 4.3778 22 6 -1.0539 8.5921 5.0724 23 6 -2.1537 9.3870 5.3359 24 6 -2.1805 10.6975 4.8970 25 6 -1.1058 11.2144 4.1979 26 6 -0.0042 10.4208 3.9381 27 6 2.7152 3.3673 -0.6756 28 8 2.2931 2.1562 -1.0890 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 3.8089 5.1414 1.0465 35 1 3.5999 4.0855 2.4642 36 1 1.0515 4.9764 1.6349 37 1 0.1241 6.4354 3.7025 38 1 0.3320 7.4909 2.2844 39 1 2.7059 9.9679 4.8882 40 1 -1.0347 7.5671 5.4118 41 1 -2.9932 8.9833 5.8824 42 1 -3.0409 11.3177 5.1005 43 1 -1.1268 12.2382 3.8546 44 1 0.8356 10.8247 3.3920 45 1 3.0027 4.1960 -1.3057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836981650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:06 Heat of formation + Delta-G solvation = -2.715119 kcal Electronic energy + Delta-G solvation = -26859.601227 eV Core-core repulsion = 23036.223198 eV Total energy + Delta-G solvation = -3823.378029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.59400 -39.16893 -38.27635 -35.70084 -34.78601 -34.22505 -33.40308 -31.34019 -30.14063 -30.08005 -28.88725 -26.63679 -24.76572 -24.52640 -22.84813 -21.74250 -21.61945 -21.06295 -20.28006 -19.49512 -17.52776 -16.91375 -16.85854 -16.31142 -15.90259 -15.45651 -15.24321 -15.00604 -14.76911 -14.35820 -14.08067 -13.86588 -13.61522 -13.25886 -13.04871 -12.98008 -12.64713 -12.55130 -12.30681 -12.15857 -12.07495 -11.83678 -11.60077 -11.42893 -11.36438 -10.90210 -10.73367 -10.67429 -10.41735 -10.12143 -10.01145 -9.63414 -9.27800 -8.88586 -8.66857 -8.57027 -8.23388 -8.12670 -7.61766 -6.20528 -3.87932 1.17957 2.20276 2.25201 2.32880 2.47477 3.46706 3.53167 3.59435 3.62633 3.74165 3.87049 4.49062 4.55809 4.63103 4.69342 4.73071 4.79822 4.96327 5.32637 5.38190 5.41058 5.44860 5.54940 5.60760 5.64673 5.67326 5.73469 5.77437 5.81539 5.92154 6.01848 6.05555 6.10928 6.18409 6.32964 6.43716 6.70190 6.79964 6.81383 6.94596 7.21712 7.23856 7.39662 7.52060 7.73954 7.87189 8.01450 8.25519 8.53909 8.98601 9.02251 9.81221 11.19922 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002910 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.909523 B = 9618.214751 C =10786.376395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.189 3.811 4 N -0.468 5.468 5 C -0.024 4.024 6 C 0.204 3.796 7 N -0.744 5.744 8 C 0.515 3.485 9 O -0.498 6.498 10 C -0.116 4.116 11 C 0.073 3.927 12 H 0.051 0.949 13 C -0.568 4.568 14 H 0.045 0.955 15 C 0.032 3.968 16 N -0.906 5.906 17 Si 1.062 2.938 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.288 1.288 21 C -0.031 4.031 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.058 4.058 28 O -0.203 6.203 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.394 0.606 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.269 0.731 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -14.002 -14.377 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.018 4.018 4 N -0.197 5.197 5 C -0.144 4.144 6 C 0.080 3.920 7 N -0.400 5.400 8 C 0.302 3.698 9 O -0.369 6.369 10 C -0.156 4.156 11 C 0.054 3.946 12 H 0.069 0.931 13 C -0.605 4.605 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.541 5.541 17 Si 0.892 3.108 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.215 1.215 21 C -0.031 4.031 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.129 4.129 28 O -0.089 6.089 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.078 -13.653 -12.227 19.018 hybrid contribution -1.363 -0.094 -1.992 2.416 sum -6.441 -13.747 -14.219 20.800 Atomic orbital electron populations 1.21791 0.92996 1.03014 1.03092 1.20065 0.96928 0.84206 1.05164 1.26400 0.99843 0.96989 0.78614 1.70404 1.15752 1.03409 1.30131 1.21852 1.05137 0.94589 0.92782 1.19315 0.88506 0.87541 0.96646 1.46179 1.09274 1.31641 1.52929 1.20877 0.92213 0.79666 0.77060 1.90754 1.28182 1.66909 1.51059 1.21685 0.94892 0.99115 0.99941 1.17864 0.90491 0.90609 0.95686 0.93072 1.21536 1.24496 1.07480 1.07027 0.93648 1.25578 0.94513 0.94711 1.02510 1.70764 1.45704 1.14419 1.23252 0.83645 0.76417 0.75525 0.75249 1.20965 1.21769 1.21470 1.20829 0.94903 0.94595 0.92796 1.20926 0.93126 0.99882 0.98697 1.21012 0.98419 0.94495 1.00837 1.20819 0.98641 0.95846 1.01838 1.20965 0.94454 0.98855 0.99991 1.21069 0.97631 0.94657 1.01474 1.24913 1.04553 0.87293 0.96175 1.84451 1.63972 1.22686 1.37830 0.90868 0.91564 0.92171 0.88958 0.87575 0.90149 0.90009 0.77359 0.90237 0.91673 0.91903 0.86731 0.87461 0.87600 0.87472 0.87162 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.01 7.60 -12.95 -0.10 1.91 16 4 N -0.47 -6.24 11.29 -7.36 -0.08 -6.32 16 5 C -0.02 -0.30 6.48 -82.81 -0.54 -0.84 16 6 C 0.20 2.95 6.21 -5.19 -0.03 2.92 16 7 N -0.74 -11.57 5.55 -61.47 -0.34 -11.91 16 8 C 0.52 10.38 7.58 -10.98 -0.08 10.30 16 9 O -0.50 -12.48 15.01 5.56 0.08 -12.40 16 10 C -0.12 -2.28 4.94 -27.88 -0.14 -2.42 16 11 C 0.07 1.75 1.31 -92.92 -0.12 1.63 16 12 H 0.05 1.38 6.24 -51.93 -0.32 1.06 16 13 C -0.57 -15.63 6.40 -34.44 -0.22 -15.85 16 14 H 0.05 1.26 7.82 -52.48 -0.41 0.85 16 15 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 16 N -0.91 -27.84 13.63 55.43 0.76 -27.08 16 17 Si 1.06 26.66 29.91 -169.99 -5.08 21.58 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 22 C -0.11 -2.23 8.88 -39.58 -0.35 -2.59 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 25 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.13 -2.74 9.67 -39.58 -0.38 -3.12 16 27 C -0.06 -0.58 12.08 29.35 0.35 -0.23 16 28 O -0.20 -2.14 10.78 5.36 0.06 -2.08 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.39 5.19 8.46 -40.82 -0.35 4.85 16 37 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.27 8.17 6.68 -40.82 -0.27 7.90 16 40 H 0.11 2.32 7.80 -52.49 -0.41 1.91 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.11 2.28 7.95 -52.48 -0.42 1.87 16 45 H 0.22 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -35.50 385.63 -8.47 -43.97 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.46 Total: 6.45 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.21 Total: -18.02 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.33 Total: -45.32 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.14 Total: -14.48 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.08 Total: 21.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.50 -8.47 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836981650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.258 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds