Wall clock time and date at job start Tue Mar 31 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47104 * 2 1 4 4 N 1.30251 * 125.61451 * 90.00469 * 3 2 1 5 5 C 1.34485 * 108.69727 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.16133 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47279 * 275.02505 * 6 5 4 8 8 C 1.34781 * 120.00263 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99715 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00103 * 180.02562 * 8 7 6 11 11 C 1.52999 * 109.46629 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47442 * 54.06116 * 11 10 8 13 13 C 1.50700 * 109.47616 * 294.05384 * 11 10 8 14 14 H 1.08004 * 119.99702 * 330.31700 * 13 11 10 15 15 C 1.37871 * 120.00278 * 150.30886 * 13 11 10 16 16 N 1.31520 * 119.99865 * 6.29736 * 15 13 11 17 17 Si 1.86797 * 120.00267 * 186.57175 * 15 13 11 18 18 H 1.48497 * 109.47344 * 179.72566 * 17 15 13 19 19 H 1.48505 * 109.46982 * 299.72655 * 17 15 13 20 20 H 1.48496 * 109.47263 * 59.72097 * 17 15 13 21 21 C 1.50703 * 109.46564 * 174.05717 * 11 10 8 22 22 C 1.38234 * 120.00036 * 64.22663 * 21 11 10 23 23 C 1.38241 * 119.99515 * 179.78899 * 22 21 11 24 24 C 1.38231 * 120.00410 * 0.43243 * 23 22 21 25 25 C 1.38237 * 119.99893 * 359.81688 * 24 23 22 26 26 C 1.38237 * 119.99806 * 244.49330 * 21 11 10 27 27 C 1.34324 * 107.66955 * 0.26404 * 5 4 3 28 28 O 1.33964 * 125.61993 * 269.96189 * 3 2 1 29 29 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46375 * 299.99557 * 1 2 3 31 31 H 1.09002 * 109.47009 * 59.99845 * 1 2 3 32 32 H 1.09001 * 109.47118 * 240.00463 * 2 1 3 33 33 H 1.09000 * 109.47664 * 120.00504 * 2 1 3 34 34 H 1.09001 * 109.46651 * 155.02782 * 6 5 4 35 35 H 1.09000 * 109.47215 * 35.02954 * 6 5 4 36 36 H 0.96999 * 120.00038 * 0.02562 * 7 6 5 37 37 H 1.09001 * 109.47147 * 60.00090 * 10 8 7 38 38 H 1.09000 * 109.46973 * 300.00105 * 10 8 7 39 39 H 0.96993 * 119.99759 * 355.06547 * 16 15 13 40 40 H 1.07994 * 120.00247 * 359.97438 * 22 21 11 41 41 H 1.08002 * 119.99674 * 180.27316 * 23 22 21 42 42 H 1.07998 * 120.00285 * 179.83231 * 24 23 22 43 43 H 1.08003 * 120.00306 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.00144 * 359.97438 * 26 21 11 45 45 H 1.07999 * 126.44756 * 179.73333 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7147 3.3488 0.6675 6 6 3.1160 4.4848 1.5728 7 7 1.9247 5.2434 1.9621 8 6 2.0421 6.3122 2.7748 9 8 3.1338 6.6456 3.1842 10 6 0.8165 7.0921 3.1757 11 6 1.2241 8.2454 4.0946 12 1 1.9953 8.8426 3.6081 13 6 1.7601 7.6909 5.3893 14 1 1.3980 6.7442 5.7623 15 6 2.7129 8.3920 6.0976 16 7 3.0637 9.5991 5.7109 17 14 3.5110 7.6244 7.6020 18 1 4.4991 8.5726 8.1762 19 1 2.4684 7.3219 8.6153 20 1 4.1998 6.3685 7.2104 21 6 0.0230 9.1105 4.3778 22 6 -1.0539 8.5921 5.0724 23 6 -2.1537 9.3870 5.3359 24 6 -2.1805 10.6975 4.8970 25 6 -1.1058 11.2144 4.1979 26 6 -0.0042 10.4208 3.9381 27 6 2.7152 3.3673 -0.6756 28 8 2.2931 2.1562 -1.0890 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 3.8089 5.1414 1.0465 35 1 3.5999 4.0855 2.4642 36 1 1.0515 4.9764 1.6349 37 1 0.1241 6.4354 3.7025 38 1 0.3320 7.4909 2.2844 39 1 2.7059 9.9679 4.8882 40 1 -1.0347 7.5671 5.4118 41 1 -2.9932 8.9833 5.8824 42 1 -3.0409 11.3177 5.1005 43 1 -1.1268 12.2382 3.8546 44 1 0.8356 10.8247 3.3920 45 1 3.0027 4.1960 -1.3057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836981650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:05 Heat of formation + Delta-G solvation = -27.433965 kcal Electronic energy + Delta-G solvation = -26860.673117 eV Core-core repulsion = 23036.223198 eV Total energy + Delta-G solvation = -3824.449919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.44552 -40.79842 -39.82164 -36.88088 -36.06260 -35.50181 -34.50515 -33.29204 -31.61177 -31.23961 -30.24388 -27.94423 -26.49575 -25.24664 -24.57312 -23.20909 -22.60822 -21.91108 -21.83601 -21.15485 -18.90043 -18.37834 -17.89964 -17.74630 -17.24373 -16.85641 -16.52654 -16.05649 -15.78470 -15.66763 -15.62663 -15.50547 -14.89439 -14.65250 -14.56484 -14.07485 -14.00460 -13.92903 -13.53866 -13.52330 -13.45900 -13.13068 -12.69835 -12.62015 -12.59212 -12.32709 -12.08555 -12.05281 -11.95097 -11.72609 -11.63601 -11.48586 -10.84168 -10.63578 -10.35367 -10.08283 -9.88291 -9.64259 -9.27352 -8.45196 -6.10866 0.36051 0.67647 0.73761 1.37790 1.47462 1.58555 1.72793 1.73660 1.84478 2.45947 2.60673 2.90169 3.10484 3.38356 3.58136 3.82959 4.05073 4.13088 4.16701 4.24489 4.27911 4.29506 4.36032 4.43367 4.47475 4.54269 4.56675 4.63716 4.73867 4.82589 4.85118 4.86505 4.96119 5.06226 5.08903 5.14821 5.22921 5.33298 5.40540 5.41180 5.45438 5.74434 5.82226 5.94470 6.24092 6.30543 6.39238 6.61907 6.67398 6.78914 7.44411 7.64306 8.95397 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002910 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.909523 B = 9618.214751 C =10786.376395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.193 3.807 4 N -0.508 5.508 5 C -0.052 4.052 6 C 0.209 3.791 7 N -0.722 5.722 8 C 0.515 3.485 9 O -0.557 6.557 10 C -0.110 4.110 11 C 0.075 3.925 12 H 0.010 0.990 13 C -0.560 4.560 14 H 0.036 0.964 15 C -0.023 4.023 16 N -0.940 5.940 17 Si 1.098 2.902 18 H -0.287 1.287 19 H -0.268 1.268 20 H -0.287 1.287 21 C -0.055 4.055 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.152 4.152 27 C -0.034 4.034 28 O -0.203 6.203 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.408 0.592 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.258 0.742 40 H 0.112 0.888 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 -15.056 -15.445 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.015 4.015 4 N -0.237 5.237 5 C -0.171 4.171 6 C 0.085 3.915 7 N -0.377 5.377 8 C 0.302 3.698 9 O -0.433 6.433 10 C -0.150 4.150 11 C 0.056 3.944 12 H 0.029 0.971 13 C -0.598 4.598 14 H 0.055 0.945 15 C -0.222 4.222 16 N -0.579 5.579 17 Si 0.923 3.077 18 H -0.212 1.212 19 H -0.193 1.193 20 H -0.214 1.214 21 C -0.056 4.056 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.142 4.142 26 C -0.170 4.170 27 C -0.106 4.106 28 O -0.089 6.089 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.244 0.756 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.115 0.885 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.877 -14.752 -13.323 21.381 hybrid contribution -0.622 0.172 -1.780 1.894 sum -8.499 -14.580 -15.103 22.647 Atomic orbital electron populations 1.21771 0.92332 1.04238 1.02113 1.20340 0.97335 0.82079 1.06670 1.27168 0.98414 0.97926 0.77955 1.70352 1.17409 1.04182 1.31786 1.21556 1.07788 0.94223 0.93498 1.19208 0.87875 0.88262 0.96119 1.45930 1.10634 1.30018 1.51115 1.20986 0.91432 0.80337 0.76995 1.90735 1.30073 1.68757 1.53720 1.21582 0.94972 0.97983 1.00504 1.17683 0.90508 0.91669 0.94563 0.97141 1.21799 1.23645 1.06548 1.07777 0.94524 1.26702 0.95555 0.94849 1.05066 1.70851 1.47547 1.15770 1.23697 0.83179 0.76294 0.74737 0.73528 1.21240 1.19344 1.21351 1.20613 0.95102 0.94943 0.94904 1.21005 0.93751 1.00362 0.99147 1.21402 0.98274 0.94591 0.99995 1.21308 0.99222 0.95887 0.99808 1.21309 0.93632 0.99877 0.99416 1.21136 0.98614 0.94769 1.02523 1.25459 1.01967 0.87644 0.95510 1.84496 1.63851 1.22768 1.37782 0.88561 0.93439 0.92186 0.86348 0.87128 0.89334 0.92772 0.75638 0.88931 0.88716 0.93094 0.87018 0.84020 0.83528 0.84625 0.88495 0.73167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.03 -0.29 6.56 29.85 0.20 -0.10 16 3 C 0.19 3.83 7.60 88.34 0.67 4.50 16 4 N -0.51 -13.37 11.29 -291.98 -3.30 -16.66 16 5 C -0.05 -1.29 6.48 41.26 0.27 -1.02 16 6 C 0.21 6.20 6.21 85.64 0.53 6.73 16 7 N -0.72 -22.66 5.55 -466.79 -2.59 -25.25 16 8 C 0.51 21.42 7.58 87.66 0.66 22.09 16 9 O -0.56 -29.46 15.01 -3.01 -0.05 -29.50 16 10 C -0.11 -4.40 4.94 29.85 0.15 -4.26 16 11 C 0.08 3.76 1.31 -12.29 -0.02 3.74 16 12 H 0.01 0.60 6.24 -2.39 -0.01 0.59 16 13 C -0.56 -31.92 6.40 25.60 0.16 -31.76 16 14 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 15 C -0.02 -1.40 5.45 84.65 0.46 -0.93 16 16 N -0.94 -60.52 13.63 21.45 0.29 -60.23 16 17 Si 1.10 55.25 29.91 68.60 2.05 57.31 16 18 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 21 C -0.06 -2.49 4.77 -19.86 -0.09 -2.59 16 22 C -0.12 -5.02 8.88 22.27 0.20 -4.83 16 23 C -0.12 -4.15 10.05 22.27 0.22 -3.92 16 24 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 25 C -0.12 -4.34 10.05 22.27 0.22 -4.11 16 26 C -0.15 -6.48 9.67 22.27 0.22 -6.27 16 27 C -0.03 -0.62 12.08 66.93 0.81 0.19 16 28 O -0.20 -3.83 10.78 -3.75 -0.04 -3.88 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 10.48 8.46 -92.71 -0.78 9.70 16 37 H 0.09 3.43 7.86 -2.39 -0.02 3.41 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.26 16.68 6.68 -92.71 -0.62 16.06 16 40 H 0.11 4.46 7.80 -2.91 -0.02 4.43 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 44 H 0.10 4.25 7.95 -2.91 -0.02 4.23 16 45 H 0.25 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -82.02 385.63 2.33 -79.69 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.37 Total: 26.05 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 5.60 Total: -27.53 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.60 Total: -102.14 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.09 Total: -33.38 kcal Atomic # 14 Polarization: 55.25 SS G_CDS: 2.05 Total: 57.31 kcal Total: -82.02 2.33 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836981650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.256 kcal (2) G-P(sol) polarization free energy of solvation -82.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds