Wall clock time and date at job start Tue Mar 31 2020 15:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46721 * 2 1 4 4 N 1.30253 * 125.61615 * 90.00461 * 3 2 1 5 5 C 1.34477 * 108.70235 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.16872 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47224 * 275.02777 * 6 5 4 8 8 C 1.34771 * 119.99921 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00420 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99930 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46781 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47454 * 305.36711 * 11 10 8 13 13 C 1.50702 * 109.47431 * 65.37373 * 11 10 8 14 14 H 1.07993 * 119.99695 * 34.61394 * 13 11 10 15 15 C 1.37877 * 119.99835 * 214.61727 * 13 11 10 16 16 N 1.31509 * 119.99760 * 186.44319 * 15 13 11 17 17 Si 1.86804 * 120.00245 * 6.44559 * 15 13 11 18 18 H 1.48502 * 109.47244 * 85.00550 * 17 15 13 19 19 H 1.48496 * 109.47367 * 205.00691 * 17 15 13 20 20 H 1.48502 * 109.47105 * 325.00941 * 17 15 13 21 21 C 1.50706 * 109.46846 * 185.36966 * 11 10 8 22 22 C 1.38229 * 119.99965 * 296.35774 * 21 11 10 23 23 C 1.38236 * 120.00049 * 179.80638 * 22 21 11 24 24 C 1.38241 * 119.99743 * 0.40292 * 23 22 21 25 25 C 1.38233 * 120.00189 * 359.85235 * 24 23 22 26 26 C 1.38238 * 119.99852 * 116.62960 * 21 11 10 27 27 C 1.34330 * 107.66839 * 0.02562 * 5 4 3 28 28 O 1.33967 * 125.62037 * 269.97716 * 3 2 1 29 29 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47041 * 299.99266 * 1 2 3 31 31 H 1.08990 * 109.47484 * 59.99887 * 1 2 3 32 32 H 1.09004 * 109.47041 * 240.00734 * 2 1 3 33 33 H 1.08990 * 109.47484 * 120.00113 * 2 1 3 34 34 H 1.09002 * 109.47156 * 35.02595 * 6 5 4 35 35 H 1.09000 * 109.47152 * 155.03177 * 6 5 4 36 36 H 0.96994 * 119.99951 * 0.02562 * 7 6 5 37 37 H 1.08994 * 109.47087 * 300.00063 * 10 8 7 38 38 H 1.09000 * 109.46732 * 60.00522 * 10 8 7 39 39 H 0.97006 * 119.99888 * 179.97438 * 16 15 13 40 40 H 1.08005 * 120.00186 * 359.97438 * 22 21 11 41 41 H 1.07998 * 120.00357 * 180.22795 * 23 22 21 42 42 H 1.07999 * 119.99644 * 179.83360 * 24 23 22 43 43 H 1.07994 * 119.99972 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00142 * 359.97438 * 26 21 11 45 45 H 1.08003 * 126.44656 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2851 2.1360 1.0589 5 6 2.7144 3.3489 0.6676 6 6 3.1157 4.4850 1.5728 7 7 1.9243 5.2434 1.9621 8 6 2.0415 6.3116 2.7755 9 8 3.1333 6.6453 3.1849 10 6 0.8158 7.0915 3.1765 11 6 1.2234 8.2449 4.0954 12 1 1.7913 7.8538 4.9396 13 6 2.0747 9.2227 3.3270 14 1 1.8798 9.4018 2.2800 15 6 3.1023 9.8885 3.9608 16 7 3.7633 10.8327 3.3275 17 14 3.5559 9.4492 5.7189 18 1 4.4943 8.2982 5.7152 19 1 4.2058 10.6156 6.3687 20 1 2.3282 9.0843 6.4704 21 6 -0.0119 8.9442 4.6018 22 6 -0.8536 9.5889 3.7150 23 6 -1.9888 10.2269 4.1790 24 6 -2.2777 10.2272 5.5309 25 6 -1.4331 9.5870 6.4183 26 6 -0.3001 8.9456 5.9538 27 6 2.7200 3.3657 -0.6755 28 8 2.2927 2.1564 -1.0890 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5996 4.0857 2.4643 35 1 3.8085 5.1416 1.0465 36 1 1.0511 4.9764 1.6350 37 1 0.3318 7.4910 2.2853 38 1 0.1233 6.4345 3.7027 39 1 4.4861 11.3014 3.7735 40 1 -0.6259 9.5920 2.6592 41 1 -2.6485 10.7276 3.4857 42 1 -3.1631 10.7280 5.8937 43 1 -1.6586 9.5876 7.4744 44 1 0.3597 8.4452 6.6471 45 1 3.0123 4.1927 -1.3057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836981654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:09 Heat of formation + Delta-G solvation = 2.350846 kcal Electronic energy + Delta-G solvation = -26877.049712 eV Core-core repulsion = 23053.891360 eV Total energy + Delta-G solvation = -3823.158353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.57381 -39.19831 -38.33643 -35.68649 -34.77261 -34.07634 -33.39432 -31.65349 -30.21830 -30.11620 -28.93696 -26.88740 -25.29381 -24.59665 -22.60300 -21.87005 -21.65147 -21.05344 -20.23366 -19.18374 -17.45961 -16.92499 -16.88962 -16.50990 -15.94843 -15.45970 -15.21233 -15.02506 -14.69183 -14.54377 -14.17619 -13.91043 -13.72623 -13.25736 -13.04538 -12.75339 -12.70371 -12.61783 -12.40381 -12.29282 -12.12990 -11.83454 -11.68630 -11.57259 -11.35477 -11.01343 -10.74958 -10.72622 -10.52253 -10.32749 -9.85498 -9.58268 -9.27295 -9.12824 -8.81047 -8.63658 -8.36547 -8.18085 -7.79248 -5.96472 -3.93002 1.20513 2.12311 2.16994 2.33278 2.49788 3.46024 3.47103 3.50482 3.56592 3.64266 3.87146 4.50705 4.55247 4.57964 4.61299 4.73095 4.81632 4.97802 5.31687 5.33641 5.39615 5.46284 5.52599 5.54297 5.58081 5.67830 5.71460 5.73673 5.81765 5.91414 5.96800 6.03337 6.07463 6.12388 6.26756 6.35559 6.62396 6.72030 6.81757 6.85805 7.04084 7.16724 7.29654 7.53115 7.60196 7.74850 7.84930 8.02089 8.54928 8.98918 9.03133 9.69160 11.16402 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.002927 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.615994 B = 9565.217375 C =10810.971653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 C 0.188 3.812 4 N -0.469 5.469 5 C -0.026 4.026 6 C 0.204 3.796 7 N -0.743 5.743 8 C 0.516 3.484 9 O -0.500 6.500 10 C -0.116 4.116 11 C 0.056 3.944 12 H 0.049 0.951 13 C -0.488 4.488 14 H 0.071 0.929 15 C 0.086 3.914 16 N -0.900 5.900 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.296 1.296 20 H -0.261 1.261 21 C -0.038 4.038 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.150 4.150 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.055 4.055 28 O -0.203 6.203 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.394 0.606 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.262 0.738 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -18.298 -6.727 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.020 4.020 4 N -0.198 5.198 5 C -0.145 4.145 6 C 0.080 3.920 7 N -0.399 5.399 8 C 0.303 3.697 9 O -0.372 6.372 10 C -0.157 4.157 11 C 0.037 3.963 12 H 0.067 0.933 13 C -0.525 4.525 14 H 0.089 0.911 15 C -0.117 4.117 16 N -0.537 5.537 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.223 1.223 20 H -0.186 1.186 21 C -0.039 4.039 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.126 4.126 28 O -0.089 6.089 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.227 0.773 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.986 -18.117 -5.811 20.634 hybrid contribution 0.164 0.257 -0.006 0.304 sum -7.822 -17.860 -5.817 20.347 Atomic orbital electron populations 1.21788 0.93018 1.02979 1.03100 1.20055 0.96911 0.84244 1.05123 1.26376 0.99982 0.96963 0.78665 1.70378 1.15887 1.03399 1.30172 1.21841 1.05288 0.94562 0.92840 1.19323 0.88539 0.87539 0.96584 1.46136 1.09310 1.31457 1.52979 1.20841 0.92122 0.79087 0.77686 1.90749 1.28100 1.65675 1.52655 1.21671 0.94583 0.97733 1.01681 1.18123 0.90690 0.92045 0.95465 0.93251 1.20576 1.12774 1.22013 0.97092 0.91121 1.24880 0.95460 0.93784 0.97546 1.69896 1.22719 1.23202 1.37893 0.86933 0.79442 0.77868 0.85661 1.19758 1.22332 1.18574 1.20740 0.94680 0.95832 0.92609 1.20955 0.93643 0.97288 1.00088 1.21048 0.97907 1.00313 0.95325 1.20858 1.00002 1.02177 0.93762 1.20964 0.95602 0.99231 0.98648 1.21160 0.97090 1.01318 0.95852 1.24970 1.04111 0.87278 0.96248 1.84455 1.63802 1.22843 1.37794 0.90907 0.91593 0.92141 0.88969 0.87639 0.90201 0.89859 0.77286 0.89744 0.91306 0.92866 0.86296 0.87219 0.87454 0.87394 0.87008 0.76410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.48 16 2 C -0.03 -0.16 6.56 -27.88 -0.18 -0.34 16 3 C 0.19 1.96 7.60 -12.95 -0.10 1.87 16 4 N -0.47 -6.08 11.29 -7.36 -0.08 -6.16 16 5 C -0.03 -0.32 6.48 -82.81 -0.54 -0.86 16 6 C 0.20 2.93 6.21 -5.19 -0.03 2.90 16 7 N -0.74 -11.32 5.55 -61.47 -0.34 -11.66 16 8 C 0.52 10.13 7.58 -10.98 -0.08 10.05 16 9 O -0.50 -12.27 15.00 5.55 0.08 -12.18 16 10 C -0.12 -2.18 4.94 -27.88 -0.14 -2.32 16 11 C 0.06 1.29 1.28 -92.92 -0.12 1.17 16 12 H 0.05 1.21 4.78 -51.93 -0.25 0.96 16 13 C -0.49 -13.40 6.94 -34.44 -0.24 -13.64 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 16 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 17 Si 0.87 22.96 27.04 -169.99 -4.60 18.37 16 18 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 20 H -0.26 -6.37 5.15 56.52 0.29 -6.08 16 21 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 22 C -0.10 -1.99 8.87 -39.59 -0.35 -2.34 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.72 9.13 -39.58 -0.36 -3.08 16 27 C -0.05 -0.57 12.08 29.35 0.35 -0.21 16 28 O -0.20 -2.16 10.78 5.35 0.06 -2.10 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.39 5.04 8.46 -40.82 -0.35 4.69 16 37 H 0.08 1.47 7.80 -51.93 -0.41 1.06 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.12 2.29 7.77 -52.48 -0.41 1.88 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 2.20 6.96 -52.49 -0.37 1.84 16 45 H 0.22 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -35.60 380.42 -8.10 -43.70 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.51 Total: 5.92 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.21 Total: -14.23 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.35 Total: -45.20 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.14 Total: -14.28 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.60 Total: 18.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.60 -8.10 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836981654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.049 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds