Wall clock time and date at job start Tue Mar 31 2020 15:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46721 * 2 1 4 4 N 1.30253 * 125.61615 * 90.00461 * 3 2 1 5 5 C 1.34477 * 108.70235 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.16872 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47224 * 275.02777 * 6 5 4 8 8 C 1.34771 * 119.99921 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00420 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99930 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46781 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47454 * 305.36711 * 11 10 8 13 13 C 1.50702 * 109.47431 * 65.37373 * 11 10 8 14 14 H 1.07993 * 119.99695 * 34.61394 * 13 11 10 15 15 C 1.37877 * 119.99835 * 214.61727 * 13 11 10 16 16 N 1.31509 * 119.99760 * 186.44319 * 15 13 11 17 17 Si 1.86804 * 120.00245 * 6.44559 * 15 13 11 18 18 H 1.48502 * 109.47244 * 85.00550 * 17 15 13 19 19 H 1.48496 * 109.47367 * 205.00691 * 17 15 13 20 20 H 1.48502 * 109.47105 * 325.00941 * 17 15 13 21 21 C 1.50706 * 109.46846 * 185.36966 * 11 10 8 22 22 C 1.38229 * 119.99965 * 296.35774 * 21 11 10 23 23 C 1.38236 * 120.00049 * 179.80638 * 22 21 11 24 24 C 1.38241 * 119.99743 * 0.40292 * 23 22 21 25 25 C 1.38233 * 120.00189 * 359.85235 * 24 23 22 26 26 C 1.38238 * 119.99852 * 116.62960 * 21 11 10 27 27 C 1.34330 * 107.66839 * 0.02562 * 5 4 3 28 28 O 1.33967 * 125.62037 * 269.97716 * 3 2 1 29 29 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47041 * 299.99266 * 1 2 3 31 31 H 1.08990 * 109.47484 * 59.99887 * 1 2 3 32 32 H 1.09004 * 109.47041 * 240.00734 * 2 1 3 33 33 H 1.08990 * 109.47484 * 120.00113 * 2 1 3 34 34 H 1.09002 * 109.47156 * 35.02595 * 6 5 4 35 35 H 1.09000 * 109.47152 * 155.03177 * 6 5 4 36 36 H 0.96994 * 119.99951 * 0.02562 * 7 6 5 37 37 H 1.08994 * 109.47087 * 300.00063 * 10 8 7 38 38 H 1.09000 * 109.46732 * 60.00522 * 10 8 7 39 39 H 0.97006 * 119.99888 * 179.97438 * 16 15 13 40 40 H 1.08005 * 120.00186 * 359.97438 * 22 21 11 41 41 H 1.07998 * 120.00357 * 180.22795 * 23 22 21 42 42 H 1.07999 * 119.99644 * 179.83360 * 24 23 22 43 43 H 1.07994 * 119.99972 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00142 * 359.97438 * 26 21 11 45 45 H 1.08003 * 126.44656 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2851 2.1360 1.0589 5 6 2.7144 3.3489 0.6676 6 6 3.1157 4.4850 1.5728 7 7 1.9243 5.2434 1.9621 8 6 2.0415 6.3116 2.7755 9 8 3.1333 6.6453 3.1849 10 6 0.8158 7.0915 3.1765 11 6 1.2234 8.2449 4.0954 12 1 1.7913 7.8538 4.9396 13 6 2.0747 9.2227 3.3270 14 1 1.8798 9.4018 2.2800 15 6 3.1023 9.8885 3.9608 16 7 3.7633 10.8327 3.3275 17 14 3.5559 9.4492 5.7189 18 1 4.4943 8.2982 5.7152 19 1 4.2058 10.6156 6.3687 20 1 2.3282 9.0843 6.4704 21 6 -0.0119 8.9442 4.6018 22 6 -0.8536 9.5889 3.7150 23 6 -1.9888 10.2269 4.1790 24 6 -2.2777 10.2272 5.5309 25 6 -1.4331 9.5870 6.4183 26 6 -0.3001 8.9456 5.9538 27 6 2.7200 3.3657 -0.6755 28 8 2.2927 2.1564 -1.0890 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5996 4.0857 2.4643 35 1 3.8085 5.1416 1.0465 36 1 1.0511 4.9764 1.6350 37 1 0.3318 7.4910 2.2853 38 1 0.1233 6.4345 3.7027 39 1 4.4861 11.3014 3.7735 40 1 -0.6259 9.5920 2.6592 41 1 -2.6485 10.7276 3.4857 42 1 -3.1631 10.7280 5.8937 43 1 -1.6586 9.5876 7.4744 44 1 0.3597 8.4452 6.6471 45 1 3.0123 4.1927 -1.3057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836981654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:08 Heat of formation + Delta-G solvation = -23.349758 kcal Electronic energy + Delta-G solvation = -26878.164174 eV Core-core repulsion = 23053.891360 eV Total energy + Delta-G solvation = -3824.272814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.42950 -40.76945 -39.80035 -36.83738 -35.85500 -35.46354 -34.48093 -33.70795 -31.60492 -31.22799 -30.24381 -28.34949 -26.85930 -25.22731 -24.24708 -23.28961 -22.58672 -21.87497 -21.73142 -20.79873 -19.01599 -18.47443 -17.90392 -17.75109 -17.23275 -16.81524 -16.51548 -16.27953 -15.87624 -15.68584 -15.54365 -15.35373 -14.84058 -14.76211 -14.48412 -14.18264 -14.06087 -13.84032 -13.71911 -13.50255 -13.35521 -13.28947 -12.83255 -12.70009 -12.59843 -12.31715 -12.08107 -12.03523 -11.90517 -11.79276 -11.63331 -11.46599 -11.09353 -10.72381 -10.56614 -10.03970 -9.87113 -9.61067 -9.29449 -8.21966 -6.17514 0.37437 0.69360 0.74214 1.31388 1.39467 1.39678 1.42176 1.74251 1.89916 2.42079 2.49544 2.91288 3.08606 3.25935 3.60857 3.84828 4.07417 4.13185 4.18681 4.26189 4.30806 4.32481 4.38372 4.45093 4.49483 4.56462 4.59623 4.66445 4.75850 4.85485 4.85962 4.87649 4.97767 5.07607 5.09072 5.17115 5.20856 5.35201 5.38541 5.41360 5.48127 5.69616 5.77748 5.83273 6.03731 6.34119 6.37229 6.66407 6.68273 6.81218 7.46288 7.48626 8.94827 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.002927 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.615994 B = 9565.217375 C =10810.971653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.193 3.807 4 N -0.504 5.504 5 C -0.049 4.049 6 C 0.209 3.791 7 N -0.722 5.722 8 C 0.514 3.486 9 O -0.558 6.558 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.031 0.969 13 C -0.464 4.464 14 H 0.038 0.962 15 C 0.026 3.974 16 N -0.952 5.952 17 Si 0.919 3.081 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.232 1.232 21 C -0.063 4.063 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.154 4.154 27 C -0.038 4.038 28 O -0.203 6.203 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.409 0.591 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.258 0.742 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.152 -19.750 -6.593 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.015 4.015 4 N -0.233 5.233 5 C -0.168 4.168 6 C 0.085 3.915 7 N -0.377 5.377 8 C 0.301 3.699 9 O -0.435 6.435 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.049 0.951 13 C -0.502 4.502 14 H 0.056 0.944 15 C -0.171 4.171 16 N -0.593 5.593 17 Si 0.747 3.253 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.156 1.156 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.172 4.172 27 C -0.110 4.110 28 O -0.090 6.090 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.245 0.755 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.126 0.874 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.293 -19.618 -5.683 23.339 hybrid contribution 1.010 0.599 -0.143 1.184 sum -10.282 -19.019 -5.827 22.392 Atomic orbital electron populations 1.21769 0.92305 1.04232 1.02152 1.20341 0.97355 0.82017 1.06676 1.27198 0.98423 0.97923 0.77969 1.70335 1.17430 1.03938 1.31621 1.21546 1.07578 0.94298 0.93379 1.19194 0.87933 0.88078 0.96283 1.45906 1.10572 1.29979 1.51237 1.21052 0.91526 0.79670 0.77613 1.90731 1.30013 1.67597 1.55145 1.21598 0.94773 0.96976 1.01816 1.18004 0.91006 0.92289 0.94942 0.95070 1.20799 1.12397 1.21147 0.95844 0.94400 1.25562 0.96227 0.94318 1.00945 1.70025 1.24275 1.25514 1.39520 0.86175 0.79814 0.76720 0.82637 1.21431 1.22477 1.15567 1.20490 0.94849 0.97305 0.93709 1.21016 0.94787 0.98219 0.99651 1.21406 0.97078 0.99228 0.96603 1.21339 1.00643 1.00707 0.93134 1.21330 0.94400 0.97942 1.00580 1.21263 0.98479 1.02382 0.95123 1.25433 1.02124 0.87673 0.95735 1.84496 1.63732 1.22871 1.37876 0.88572 0.93238 0.92333 0.86507 0.86953 0.92059 0.90074 0.75527 0.88342 0.87976 0.93301 0.87073 0.84234 0.83572 0.84291 0.87432 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.03 -0.28 6.56 29.85 0.20 -0.08 16 3 C 0.19 3.76 7.60 88.34 0.67 4.43 16 4 N -0.50 -12.80 11.29 -291.98 -3.30 -16.10 16 5 C -0.05 -1.22 6.48 41.26 0.27 -0.95 16 6 C 0.21 6.15 6.21 85.63 0.53 6.69 16 7 N -0.72 -22.06 5.55 -466.78 -2.59 -24.65 16 8 C 0.51 20.56 7.58 87.66 0.66 21.22 16 9 O -0.56 -28.57 15.00 -3.05 -0.05 -28.62 16 10 C -0.11 -4.15 4.94 29.85 0.15 -4.01 16 11 C 0.06 2.64 1.28 -12.28 -0.02 2.62 16 12 H 0.03 1.55 4.78 -2.38 -0.01 1.54 16 13 C -0.46 -26.44 6.94 25.60 0.18 -26.26 16 14 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 15 C 0.03 1.58 5.47 84.66 0.46 2.04 16 16 N -0.95 -62.43 13.96 21.45 0.30 -62.13 16 17 Si 0.92 48.94 27.04 68.60 1.85 50.80 16 18 H -0.29 -15.90 7.11 99.48 0.71 -15.19 16 19 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 20 H -0.23 -11.12 5.15 99.48 0.51 -10.61 16 21 C -0.06 -2.61 4.77 -19.86 -0.09 -2.71 16 22 C -0.12 -4.49 8.87 22.27 0.20 -4.29 16 23 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 24 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 25 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 26 C -0.15 -5.86 9.13 22.27 0.20 -5.66 16 27 C -0.04 -0.73 12.08 66.93 0.81 0.07 16 28 O -0.20 -3.96 10.78 -3.78 -0.04 -4.00 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.41 10.10 8.46 -92.71 -0.78 9.31 16 37 H 0.10 3.37 7.80 -2.39 -0.02 3.35 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 40 H 0.11 4.27 7.77 -2.91 -0.02 4.24 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.11 4.08 6.96 -2.91 -0.02 4.06 16 45 H 0.25 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -81.96 380.42 1.81 -80.15 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.02 Total: 23.11 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.60 Total: -18.56 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -5.59 Total: -102.88 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.09 Total: -32.62 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.85 Total: 50.80 kcal Total: -81.96 1.81 -80.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836981654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.800 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds