Wall clock time and date at job start Tue Mar 31 2020 16:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.50702 * 109.46751 * 240.00248 * 2 1 3 5 5 H 1.08001 * 120.00383 * 239.99448 * 4 2 1 6 6 C 1.37877 * 120.00170 * 60.00173 * 4 2 1 7 7 N 1.31519 * 119.99857 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00295 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47148 * 89.99939 * 8 6 4 10 10 H 1.48494 * 109.47131 * 210.00030 * 8 6 4 11 11 H 1.48494 * 109.46833 * 329.99913 * 8 6 4 12 12 C 1.53000 * 109.47379 * 120.00726 * 2 1 3 13 13 N 1.46506 * 109.46649 * 299.99720 * 12 2 1 14 14 C 1.34774 * 119.99660 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99958 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99799 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47077 * 179.97438 * 16 14 13 18 18 C 1.41003 * 126.70263 * 125.00172 * 17 16 14 19 19 C 1.36831 * 103.88282 * 179.97438 * 18 17 16 20 20 C 1.47844 * 126.92395 * 179.97438 * 19 18 17 21 21 C 1.39567 * 120.13817 * 179.97438 * 20 19 18 22 22 C 1.37963 * 119.85204 * 180.02562 * 21 20 19 23 23 C 1.38355 * 120.14529 * 359.97438 * 22 21 20 24 24 C 1.38355 * 120.29228 * 0.02562 * 23 22 21 25 25 C 1.37966 * 120.14247 * 0.02562 * 24 23 22 26 26 O 1.34491 * 106.14680 * 0.26326 * 19 18 17 27 27 N 1.20895 * 111.45277 * 359.52731 * 26 19 18 28 28 H 1.08999 * 109.46537 * 299.99374 * 1 2 3 29 29 H 1.08998 * 109.47058 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46930 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47278 * 300.00709 * 3 2 1 33 33 H 1.09007 * 109.46626 * 60.00499 * 3 2 1 34 34 H 0.96997 * 119.99641 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46947 * 180.02562 * 12 2 1 36 36 H 1.08996 * 109.47171 * 59.99648 * 12 2 1 37 37 H 0.96995 * 120.00246 * 0.02562 * 13 12 2 38 38 H 1.09001 * 109.46858 * 60.00643 * 16 14 13 39 39 H 1.08996 * 109.47387 * 300.00080 * 16 14 13 40 40 H 1.08007 * 128.06072 * 359.94175 * 18 17 16 41 41 H 1.08000 * 120.07565 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.93003 * 180.02562 * 22 21 20 43 43 H 1.08006 * 119.85810 * 179.74266 * 23 22 21 44 44 H 1.07993 * 119.93553 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.07678 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6306 -1.7564 -3.7122 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8770 -0.4917 3.6694 15 8 2.5742 -1.4778 3.7806 16 6 1.3752 0.2190 4.8999 17 6 1.8764 -0.4923 6.1303 18 6 2.6081 0.0763 7.1931 19 6 2.8152 -0.9725 8.0472 20 6 3.5376 -0.9386 9.3367 21 6 3.6648 -2.1004 10.0994 22 6 4.3397 -2.0619 11.3021 23 6 4.8903 -0.8751 11.7522 24 6 4.7678 0.2802 11.0009 25 6 4.0944 0.2556 9.7969 26 8 2.2346 -2.0418 7.4742 27 7 1.7179 -1.7525 6.4202 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7087 1.1614 -3.4843 35 1 3.1301 -0.7210 1.2493 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7576 2.3565 38 1 0.2851 0.2197 4.8999 39 1 1.7392 1.2464 4.9001 40 1 2.9306 1.1008 7.3064 41 1 3.2359 -3.0276 9.7490 42 1 4.4393 -2.9604 11.8931 43 1 5.4141 -0.8493 12.6963 44 1 5.1994 1.2035 11.3579 45 1 3.9998 1.1580 9.2111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837889625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:48 Heat of formation + Delta-G solvation = 40.417895 kcal Electronic energy + Delta-G solvation = -26400.848636 eV Core-core repulsion = 22579.340994 eV Total energy + Delta-G solvation = -3821.507642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.93543 -39.44946 -39.29626 -36.44703 -34.68442 -33.43072 -33.28908 -31.41655 -31.01333 -29.73808 -29.30190 -25.73853 -25.58568 -24.81390 -24.03863 -23.43717 -22.21052 -21.04768 -19.73070 -18.80257 -18.12831 -17.74221 -16.82715 -16.55098 -15.97259 -15.70611 -15.33136 -15.09889 -15.02796 -14.58558 -14.23572 -13.85948 -13.59540 -13.37961 -13.28231 -13.18362 -13.00535 -12.80589 -12.25231 -12.19489 -11.78541 -11.50668 -11.37868 -11.21030 -11.17731 -10.86742 -10.69853 -10.51449 -10.39595 -10.22401 -10.18184 -9.64593 -9.56626 -9.39539 -9.23762 -8.79574 -8.61124 -8.46230 -8.31898 -6.02754 -4.12579 0.34390 0.96982 1.78461 2.18431 2.85358 3.02160 3.28209 3.35087 3.39124 3.43737 3.68582 4.03309 4.20503 4.40173 4.50172 4.55000 4.66056 4.86255 4.95557 4.96285 5.07195 5.17660 5.24041 5.26883 5.35001 5.45739 5.56374 5.60818 5.87122 6.01502 6.06132 6.06999 6.22936 6.32589 6.48333 6.49846 6.77391 6.80872 6.92320 7.00929 7.01731 7.34360 7.54615 7.68920 8.00106 8.02535 8.14170 8.23985 8.37884 8.68355 8.88087 9.53177 10.98663 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.001891 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.429250 B =14805.729059 C =14923.990417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.716 5.716 14 C 0.505 3.495 15 O -0.539 6.539 16 C -0.066 4.066 17 C 0.035 3.965 18 C -0.207 4.207 19 C -0.002 4.002 20 C -0.016 4.016 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.092 4.092 26 O 0.113 5.887 27 N -0.329 5.329 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 3.021 27.316 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.289 3.711 15 O -0.416 6.416 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.228 4.228 19 C -0.065 4.065 20 C -0.017 4.017 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.111 4.111 26 O 0.041 5.959 27 N -0.028 5.028 28 H 0.025 0.975 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.191 0.809 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.157 1.403 26.546 26.770 hybrid contribution 0.365 0.712 -0.797 1.129 sum 3.522 2.114 25.750 26.075 Atomic orbital electron populations 1.21829 0.97718 0.99202 1.00073 1.18370 0.92837 0.92790 0.90575 1.21826 0.98573 0.98316 1.00081 1.20982 1.31439 1.12064 0.89877 0.92468 1.24884 0.94890 0.94932 0.98858 1.69802 1.36713 1.22739 1.23218 0.86565 0.79336 0.79385 0.82566 1.20711 1.21257 1.19920 1.21718 0.98099 0.95816 0.83307 1.46259 1.52759 1.31871 1.05841 1.20180 0.81334 0.85036 0.84572 1.90722 1.37993 1.26136 1.86735 1.20068 1.02916 0.99597 0.88123 1.22681 1.01253 0.90396 0.98001 1.22498 1.04786 1.01211 0.94328 1.22454 1.00865 0.87100 0.96112 1.17646 0.98976 0.94963 0.90152 1.21352 0.98036 0.97694 0.94336 1.21130 0.97931 0.98432 0.96093 1.21334 0.98934 0.92798 0.99835 1.21080 0.99230 0.98771 0.94530 1.21126 0.96926 0.96659 0.96392 1.84954 1.51837 1.33688 1.25399 1.73881 1.14912 1.16538 0.97434 0.97493 0.89572 0.95451 0.95456 0.89582 0.97478 0.93013 0.92766 0.92739 0.76676 0.87052 0.86740 0.80916 0.84953 0.85357 0.85650 0.85286 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 13 N -0.72 -12.65 4.96 -60.29 -0.30 -12.95 16 14 C 0.50 8.87 7.82 -10.99 -0.09 8.79 16 15 O -0.54 -11.90 15.59 5.55 0.09 -11.82 16 16 C -0.07 -0.83 6.29 -29.03 -0.18 -1.01 16 17 C 0.04 0.50 6.08 -82.20 -0.50 0.00 16 18 C -0.21 -2.33 10.47 -39.04 -0.41 -2.73 16 19 C 0.00 -0.02 7.16 -36.16 -0.26 -0.28 16 20 C -0.02 -0.15 5.87 -104.98 -0.62 -0.77 16 21 C -0.10 -0.81 9.74 -39.19 -0.38 -1.19 16 22 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 23 C -0.11 -0.66 10.04 -39.50 -0.40 -1.05 16 24 C -0.12 -0.73 10.03 -39.64 -0.40 -1.13 16 25 C -0.09 -0.70 9.59 -39.19 -0.38 -1.07 16 26 O 0.11 1.63 11.04 15.97 0.18 1.81 16 27 N -0.33 -5.42 11.45 33.51 0.38 -5.03 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 6.12 6.16 -40.82 -0.25 5.87 16 38 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.11 1.03 8.13 -51.93 -0.42 0.61 16 40 H 0.17 1.32 7.47 -52.48 -0.39 0.93 16 41 H 0.13 1.03 7.96 -52.49 -0.42 0.62 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 43 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 44 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.13 0.75 7.16 -52.48 -0.38 0.37 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -32.24 374.40 -8.51 -40.75 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.13 Total: 3.60 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.87 Total: -14.78 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.60 Total: -41.04 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.26 Total: -10.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.24 -8.51 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.166 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds