Wall clock time and date at job start Tue Mar 31 2020 16:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.50702 * 109.46751 * 240.00248 * 2 1 3 5 5 H 1.08001 * 120.00383 * 239.99448 * 4 2 1 6 6 C 1.37877 * 120.00170 * 60.00173 * 4 2 1 7 7 N 1.31519 * 119.99857 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00295 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47148 * 89.99939 * 8 6 4 10 10 H 1.48494 * 109.47131 * 210.00030 * 8 6 4 11 11 H 1.48494 * 109.46833 * 329.99913 * 8 6 4 12 12 C 1.53000 * 109.47379 * 120.00726 * 2 1 3 13 13 N 1.46506 * 109.46649 * 299.99720 * 12 2 1 14 14 C 1.34774 * 119.99660 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99958 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99799 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47077 * 179.97438 * 16 14 13 18 18 C 1.41003 * 126.70263 * 125.00172 * 17 16 14 19 19 C 1.36831 * 103.88282 * 179.97438 * 18 17 16 20 20 C 1.47844 * 126.92395 * 179.97438 * 19 18 17 21 21 C 1.39567 * 120.13817 * 179.97438 * 20 19 18 22 22 C 1.37963 * 119.85204 * 180.02562 * 21 20 19 23 23 C 1.38355 * 120.14529 * 359.97438 * 22 21 20 24 24 C 1.38355 * 120.29228 * 0.02562 * 23 22 21 25 25 C 1.37966 * 120.14247 * 0.02562 * 24 23 22 26 26 O 1.34491 * 106.14680 * 0.26326 * 19 18 17 27 27 N 1.20895 * 111.45277 * 359.52731 * 26 19 18 28 28 H 1.08999 * 109.46537 * 299.99374 * 1 2 3 29 29 H 1.08998 * 109.47058 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46930 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47278 * 300.00709 * 3 2 1 33 33 H 1.09007 * 109.46626 * 60.00499 * 3 2 1 34 34 H 0.96997 * 119.99641 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46947 * 180.02562 * 12 2 1 36 36 H 1.08996 * 109.47171 * 59.99648 * 12 2 1 37 37 H 0.96995 * 120.00246 * 0.02562 * 13 12 2 38 38 H 1.09001 * 109.46858 * 60.00643 * 16 14 13 39 39 H 1.08996 * 109.47387 * 300.00080 * 16 14 13 40 40 H 1.08007 * 128.06072 * 359.94175 * 18 17 16 41 41 H 1.08000 * 120.07565 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.93003 * 180.02562 * 22 21 20 43 43 H 1.08006 * 119.85810 * 179.74266 * 23 22 21 44 44 H 1.07993 * 119.93553 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.07678 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6306 -1.7564 -3.7122 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8770 -0.4917 3.6694 15 8 2.5742 -1.4778 3.7806 16 6 1.3752 0.2190 4.8999 17 6 1.8764 -0.4923 6.1303 18 6 2.6081 0.0763 7.1931 19 6 2.8152 -0.9725 8.0472 20 6 3.5376 -0.9386 9.3367 21 6 3.6648 -2.1004 10.0994 22 6 4.3397 -2.0619 11.3021 23 6 4.8903 -0.8751 11.7522 24 6 4.7678 0.2802 11.0009 25 6 4.0944 0.2556 9.7969 26 8 2.2346 -2.0418 7.4742 27 7 1.7179 -1.7525 6.4202 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7087 1.1614 -3.4843 35 1 3.1301 -0.7210 1.2493 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7576 2.3565 38 1 0.2851 0.2197 4.8999 39 1 1.7392 1.2464 4.9001 40 1 2.9306 1.1008 7.3064 41 1 3.2359 -3.0276 9.7490 42 1 4.4393 -2.9604 11.8931 43 1 5.4141 -0.8493 12.6963 44 1 5.1994 1.2035 11.3579 45 1 3.9998 1.1580 9.2111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:47 Heat of formation + Delta-G solvation = 22.051754 kcal Electronic energy + Delta-G solvation = -26401.645052 eV Core-core repulsion = 22579.340994 eV Total energy + Delta-G solvation = -3822.304057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.91318 -40.78185 -39.96781 -38.19383 -35.70933 -35.01977 -34.18144 -32.84017 -31.91765 -30.51662 -30.41471 -27.55985 -27.44244 -26.58139 -24.78309 -24.20162 -22.88156 -22.25356 -20.86212 -20.56074 -18.96552 -18.81630 -18.21765 -17.61749 -17.22009 -16.89643 -16.62141 -16.47811 -16.15158 -15.80785 -15.00469 -14.92813 -14.83753 -14.65988 -14.37410 -14.19509 -14.03261 -13.89114 -13.86855 -13.47552 -13.15410 -13.09927 -12.68932 -12.61867 -12.41271 -12.25271 -12.15193 -12.13534 -11.93039 -11.49219 -11.33611 -11.26375 -11.20002 -10.81972 -10.67946 -10.40852 -9.96718 -9.90770 -9.31374 -8.03782 -6.19129 -0.33182 0.46031 0.92602 1.32602 1.40503 1.43490 1.51669 1.66117 2.03891 2.32612 2.49196 2.89351 3.08651 3.19524 3.38383 3.88806 3.91819 4.04586 4.06426 4.18978 4.27095 4.32567 4.43226 4.47495 4.51020 4.53599 4.64265 4.70904 4.73693 4.93057 4.98455 5.05875 5.06400 5.11253 5.12859 5.19349 5.35803 5.48732 5.51116 5.57673 5.58020 5.66223 5.67446 6.00045 6.15602 6.21153 6.42881 6.65114 6.84469 7.28976 7.31607 7.48234 8.94956 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.001891 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.429250 B =14805.729059 C =14923.990417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.150 3.850 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.589 6.589 16 C -0.056 4.056 17 C 0.021 3.979 18 C -0.205 4.205 19 C -0.002 4.002 20 C -0.044 4.044 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.094 4.094 26 O 0.092 5.908 27 N -0.379 5.379 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.413 0.587 38 H 0.137 0.863 39 H 0.160 0.840 40 H 0.211 0.789 41 H 0.125 0.875 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 5.346 29.558 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.359 5.359 14 C 0.289 3.711 15 O -0.470 6.470 16 C -0.096 4.096 17 C -0.137 4.137 18 C -0.225 4.225 19 C -0.065 4.065 20 C -0.045 4.045 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.113 4.113 26 O 0.024 5.976 27 N -0.081 5.081 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.228 0.772 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.175 0.825 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.544 3.751 28.814 29.273 hybrid contribution 0.303 -0.032 -1.363 1.397 sum 3.847 3.720 27.451 27.968 Atomic orbital electron populations 1.21672 0.96996 0.98529 1.00635 1.18378 0.93345 0.93276 0.90068 1.21660 0.97894 0.97509 1.00687 1.21258 1.31733 1.12094 0.91731 0.94153 1.25434 0.95199 0.95632 1.00868 1.69896 1.36878 1.23130 1.23624 0.85782 0.78564 0.78545 0.80051 1.20603 1.20552 1.20307 1.21225 0.96825 0.94872 0.84512 1.46044 1.52865 1.32061 1.04943 1.21074 0.80066 0.84358 0.85587 1.90709 1.40276 1.28537 1.87458 1.20189 1.04370 1.00656 0.84356 1.23158 1.01383 0.90151 0.99047 1.22905 1.04011 1.02633 0.92977 1.23040 1.00053 0.86592 0.96856 1.17820 1.00587 0.96340 0.89794 1.21476 0.98900 0.97449 0.95363 1.21404 0.97435 0.99819 0.95505 1.21745 0.97850 0.92259 1.00629 1.21467 0.98463 1.00003 0.93839 1.21406 0.96383 0.96414 0.97083 1.84883 1.52516 1.34920 1.25330 1.73868 1.17158 1.18373 0.98744 0.94020 0.91778 0.96703 0.96374 0.91857 0.93855 0.92965 0.94627 0.95084 0.74932 0.84502 0.82234 0.77186 0.85712 0.83505 0.82924 0.82542 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -28.44 8.01 25.60 0.21 -28.24 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 6 C 0.03 1.52 5.15 84.65 0.44 1.95 16 7 N -0.90 -47.72 9.35 21.45 0.20 -47.52 16 8 Si 0.94 43.14 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.15 6.52 4.50 86.38 0.39 6.91 16 13 N -0.71 -23.95 4.96 -463.05 -2.30 -26.25 16 14 C 0.50 17.14 7.82 87.66 0.69 17.83 16 15 O -0.59 -26.55 15.59 -3.04 -0.05 -26.60 16 16 C -0.06 -1.25 6.29 29.10 0.18 -1.06 16 17 C 0.02 0.56 6.08 43.47 0.26 0.82 16 18 C -0.20 -4.23 10.47 22.62 0.24 -4.00 16 19 C 0.00 -0.06 7.16 24.48 0.18 0.12 16 20 C -0.04 -0.81 5.87 -20.09 -0.12 -0.93 16 21 C -0.11 -1.92 9.74 22.53 0.22 -1.70 16 22 C -0.12 -1.46 10.03 22.23 0.22 -1.24 16 23 C -0.11 -0.96 10.04 22.33 0.22 -0.74 16 24 C -0.12 -1.10 10.03 22.23 0.22 -0.88 16 25 C -0.09 -1.21 9.59 22.53 0.22 -0.99 16 26 O 0.09 2.79 11.04 67.32 0.74 3.53 16 27 N -0.38 -12.82 11.45 -48.85 -0.56 -13.38 16 28 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 29 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 30 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 33 H 0.04 1.52 6.86 -2.38 -0.02 1.51 16 34 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 11.41 6.16 -92.71 -0.57 10.84 16 38 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.16 2.10 8.13 -2.39 -0.02 2.08 16 40 H 0.21 2.42 7.47 -2.91 -0.02 2.40 16 41 H 0.12 2.14 7.96 -2.91 -0.02 2.12 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.15 0.52 8.06 -2.91 -0.02 0.49 16 44 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 45 H 0.15 1.23 7.16 -2.91 -0.02 1.21 16 Total: -1.00 -73.70 374.40 5.21 -68.49 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.44 Total: 15.79 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.70 Total: -19.22 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.65 Total: -87.15 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.70 Total: -23.07 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.70 5.21 -68.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.539 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds