Wall clock time and date at job start Tue Mar 31 2020 16:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47260 * 2 1 4 4 C 1.50696 * 109.47443 * 239.99642 * 2 1 3 5 5 H 1.08002 * 120.00280 * 240.00470 * 4 2 1 6 6 C 1.37877 * 119.99664 * 59.99805 * 4 2 1 7 7 N 1.31507 * 120.00354 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99767 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47177 * 90.00729 * 8 6 4 10 10 H 1.48504 * 109.47433 * 210.00175 * 8 6 4 11 11 H 1.48501 * 109.47642 * 330.00405 * 8 6 4 12 12 C 1.53006 * 109.46832 * 119.99720 * 2 1 3 13 13 N 1.46495 * 109.47304 * 300.00358 * 12 2 1 14 14 C 1.34777 * 119.99999 * 180.02562 * 13 12 2 15 15 O 1.21275 * 120.00130 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99609 * 179.97438 * 14 13 12 17 17 N 1.46507 * 109.46557 * 179.97438 * 16 14 13 18 18 C 1.34665 * 124.64296 * 264.99685 * 17 16 14 19 19 C 1.37860 * 109.61978 * 180.02562 * 18 17 16 20 20 C 1.41735 * 126.91196 * 179.97438 * 19 18 17 21 21 O 1.21404 * 119.99925 * 179.97438 * 20 19 18 22 22 C 1.47612 * 106.17632 * 359.74704 * 19 18 17 23 23 C 1.39193 * 133.98945 * 179.49988 * 22 19 18 24 24 C 1.37806 * 119.67024 * 180.47534 * 23 22 19 25 25 C 1.38721 * 120.26842 * 0.25865 * 24 23 22 26 26 C 1.37773 * 120.63971 * 359.97438 * 25 24 23 27 27 C 1.38017 * 124.64537 * 85.00017 * 17 16 14 28 28 H 1.09004 * 109.47567 * 300.00094 * 1 2 3 29 29 H 1.09005 * 109.46841 * 60.00241 * 1 2 3 30 30 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47481 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47294 * 300.00123 * 3 2 1 33 33 H 1.09004 * 109.47257 * 59.99917 * 3 2 1 34 34 H 0.97001 * 120.00204 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47034 * 179.97438 * 12 2 1 36 36 H 1.08997 * 109.47306 * 60.00164 * 12 2 1 37 37 H 0.97004 * 119.99713 * 359.97438 * 13 12 2 38 38 H 1.08999 * 109.46987 * 59.99873 * 16 14 13 39 39 H 1.08998 * 109.47353 * 299.99004 * 16 14 13 40 40 H 1.08009 * 125.19290 * 0.02562 * 18 17 16 41 41 H 1.08003 * 120.00074 * 359.97438 * 20 19 18 42 42 H 1.08002 * 120.16755 * 0.75706 * 23 22 19 43 43 H 1.07997 * 119.85962 * 180.28130 * 24 23 22 44 44 H 1.07999 * 119.68057 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.03010 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6310 -1.7567 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0307 2.4454 14 6 1.8775 -0.4908 3.6696 15 8 2.5747 -1.4768 3.7809 16 6 1.3755 0.2200 4.9000 17 7 1.8637 -0.4707 6.0962 18 6 1.1719 -1.4040 6.7772 19 6 1.9208 -1.8467 7.8466 20 6 1.5455 -2.8239 8.8023 21 8 2.3084 -3.1205 9.6989 22 6 3.1944 -1.1024 7.7930 23 6 4.3408 -1.0900 8.5823 24 6 5.3826 -0.2479 8.2588 25 6 5.2894 0.5880 7.1557 26 6 4.1583 0.5889 6.3691 27 6 3.0956 -0.2539 6.6795 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7095 1.1616 -3.4844 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2494 37 1 0.9941 0.7582 2.3564 38 1 0.2855 0.2200 4.9002 39 1 1.7390 1.2476 4.8997 40 1 0.1814 -1.7526 6.5242 41 1 0.5809 -3.3046 8.7329 42 1 4.4154 -1.7403 9.4413 43 1 6.2754 -0.2390 8.8665 44 1 6.1117 1.2439 6.9107 45 1 4.0960 1.2441 5.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837893525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:56 Heat of formation + Delta-G solvation = -29.907366 kcal Electronic energy + Delta-G solvation = -27249.516200 eV Core-core repulsion = 23424.959026 eV Total energy + Delta-G solvation = -3824.557174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.66724 -40.69555 -39.40594 -38.32868 -37.86316 -35.06652 -34.07328 -32.78681 -31.42041 -30.28836 -29.10389 -27.54707 -27.40482 -26.49586 -24.71438 -23.80112 -22.61396 -21.47408 -20.70229 -20.60924 -18.77333 -18.24514 -17.79439 -17.71518 -16.79258 -16.60418 -16.52135 -16.43492 -16.10053 -15.72794 -15.36359 -14.97652 -14.92798 -14.73860 -14.73215 -14.57076 -14.28582 -13.97761 -13.52328 -13.33331 -13.10695 -13.10117 -12.68586 -12.65673 -12.61939 -12.55891 -12.24872 -12.15251 -11.99780 -11.48329 -11.33184 -11.04249 -10.71347 -10.57538 -10.56669 -10.40866 -10.00863 -9.27502 -8.73199 -8.04385 -6.19542 -0.10225 0.49667 0.79049 1.40252 1.44355 1.50135 1.52490 1.54085 2.21620 2.40089 2.50368 2.96001 3.19747 3.54786 3.63942 3.67770 3.74150 3.94537 4.13514 4.18312 4.23636 4.32033 4.42101 4.49890 4.53893 4.65826 4.72057 4.74423 4.94442 4.99146 5.06595 5.09622 5.19191 5.20299 5.33867 5.43936 5.56130 5.57425 5.64619 5.66777 5.68084 5.68765 6.07873 6.13250 6.17767 6.22489 6.43307 6.59102 6.84273 6.85133 7.23210 7.48603 8.93970 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002465 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.765524 B =11358.215687 C =11767.213324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.123 4.123 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.939 3.061 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.151 3.849 13 N -0.701 5.701 14 C 0.485 3.515 15 O -0.582 6.582 16 C 0.086 3.914 17 N -0.444 5.444 18 C 0.178 3.822 19 C -0.336 4.336 20 C 0.410 3.590 21 O -0.538 6.538 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.136 4.136 25 C -0.113 4.113 26 C -0.125 4.125 27 C 0.067 3.933 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.177 0.823 39 H 0.148 0.852 40 H 0.235 0.765 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 3.994 18.209 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.766 3.234 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.204 1.204 12 C 0.027 3.973 13 N -0.354 5.354 14 C 0.270 3.730 15 O -0.462 6.462 16 C -0.038 4.038 17 N -0.122 5.122 18 C 0.042 3.958 19 C -0.344 4.344 20 C 0.277 3.723 21 O -0.418 6.418 22 C -0.092 4.092 23 C -0.120 4.120 24 C -0.155 4.155 25 C -0.132 4.132 26 C -0.145 4.145 27 C -0.035 4.035 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.252 0.748 38 H 0.195 0.805 39 H 0.166 0.834 40 H 0.251 0.749 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.163 0.837 44 H 0.169 0.831 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.836 3.453 18.300 18.838 hybrid contribution 0.464 -0.352 -1.530 1.637 sum -2.371 3.101 16.771 17.219 Atomic orbital electron populations 1.21683 0.96743 0.98776 1.00765 1.18337 0.93475 0.92949 0.90015 1.21691 0.97813 0.97816 1.00725 1.21294 1.31709 1.12139 0.91831 0.94118 1.25376 0.95172 0.95549 1.00760 1.69881 1.36945 1.23088 1.23596 0.85856 0.78631 0.78608 0.80279 1.20497 1.20833 1.20355 1.21219 0.96743 0.95095 0.84277 1.46022 1.52558 1.31973 1.04849 1.21502 0.80625 0.84903 0.85923 1.90775 1.39705 1.28530 1.87205 1.22136 1.04958 0.97601 0.79089 1.43329 1.12941 1.33523 1.22419 1.23331 0.98226 0.85768 0.88446 1.20729 0.96936 1.10869 1.05849 1.22356 0.91668 0.78582 0.79735 1.90500 1.56132 1.60635 1.34554 1.19352 0.95593 0.97972 0.96281 1.20718 0.92582 0.99376 0.99323 1.21286 0.99024 0.96751 0.98443 1.21145 0.97529 0.99746 0.94788 1.20379 0.92410 1.00215 1.01496 1.18463 0.88377 1.00985 0.95682 0.93566 0.92101 0.96327 0.96600 0.92024 0.93704 0.93009 0.94889 0.94378 0.74753 0.80532 0.83438 0.74910 0.84091 0.86413 0.83710 0.83098 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.08 71.98 0.58 -4.24 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -4.93 8.08 71.98 0.58 -4.35 16 4 C -0.53 -26.87 8.01 25.60 0.21 -26.66 16 5 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 6 C 0.03 1.60 5.15 84.66 0.44 2.03 16 7 N -0.90 -45.69 9.35 21.45 0.20 -45.49 16 8 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.15 5.73 4.50 86.38 0.39 6.11 16 13 N -0.70 -18.74 4.96 -463.06 -2.30 -21.03 16 14 C 0.48 12.37 7.90 87.66 0.69 13.06 16 15 O -0.58 -21.55 16.42 -3.01 -0.05 -21.60 16 16 C 0.09 1.16 6.41 85.63 0.55 1.71 16 17 N -0.44 -8.63 2.21 -518.62 -1.15 -9.78 16 18 C 0.18 2.88 11.22 84.17 0.94 3.82 16 19 C -0.34 -7.73 6.13 -20.03 -0.12 -7.85 16 20 C 0.41 8.75 11.44 68.68 0.79 9.54 16 21 O -0.54 -16.55 16.81 -3.41 -0.06 -16.60 16 22 C -0.09 -2.51 6.24 -20.06 -0.13 -2.64 16 23 C -0.10 -2.83 9.80 22.40 0.22 -2.61 16 24 C -0.14 -3.15 10.03 22.28 0.22 -2.93 16 25 C -0.11 -2.46 10.01 22.28 0.22 -2.24 16 26 C -0.13 -2.96 9.96 22.38 0.22 -2.73 16 27 C 0.07 1.72 6.77 38.90 0.26 1.98 16 28 H 0.05 1.41 6.86 -2.39 -0.02 1.39 16 29 H 0.06 2.76 6.07 -2.38 -0.01 2.75 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 2.83 6.07 -2.38 -0.01 2.81 16 33 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 34 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.41 8.55 6.16 -92.71 -0.57 7.98 16 38 H 0.18 0.64 8.10 -2.39 -0.02 0.62 16 39 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 42 H 0.12 3.41 7.38 -2.91 -0.02 3.39 16 43 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -76.66 375.40 5.16 -71.50 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.44 Total: 15.39 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 6.04 Total: -15.79 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.24 Total: -76.30 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.11 Total: -38.20 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -76.66 5.16 -71.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837893525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.597 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds