Wall clock time and date at job start Tue Mar 31 2020 15:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.53003 * 109.47135 * 120.00009 * 2 1 3 5 5 C 1.50704 * 109.46977 * 64.99890 * 4 2 1 6 6 C 1.35452 * 126.06479 * 269.99892 * 5 4 2 7 7 N 1.35545 * 108.87287 * 179.76815 * 6 5 4 8 8 H 0.96999 * 125.68231 * 180.23188 * 7 6 5 9 9 C 1.37663 * 108.64086 * 0.38086 * 7 6 5 10 10 C 1.46643 * 126.23281 * 179.88902 * 9 7 6 11 11 O 1.21703 * 119.99682 * 179.68615 * 10 9 7 12 12 N 1.34775 * 119.99835 * 359.68760 * 10 9 7 13 13 C 1.39837 * 120.00010 * 175.49951 * 12 10 9 14 14 C 1.38986 * 120.04071 * 215.11519 * 13 12 10 15 15 C 1.38150 * 120.06218 * 179.97438 * 14 13 12 16 16 C 1.38174 * 120.14268 * 359.76855 * 15 14 13 17 17 C 1.38909 * 120.07549 * 0.50913 * 16 15 14 18 18 O 1.35752 * 120.03341 * 179.74546 * 17 16 15 19 19 C 1.34828 * 117.00074 * 354.34276 * 18 17 16 20 20 H 1.08008 * 119.99868 * 5.02935 * 19 18 17 21 21 C 1.38651 * 120.00340 * 185.02501 * 19 18 17 22 22 N 1.31559 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47082 * 90.00542 * 23 21 19 25 25 H 1.48500 * 109.46896 * 210.00036 * 23 21 19 26 26 H 1.48491 * 109.47239 * 330.00215 * 23 21 19 27 27 C 1.38743 * 120.03484 * 35.13672 * 13 12 10 28 28 C 1.37887 * 107.52783 * 359.62205 * 9 7 6 29 29 H 1.09004 * 109.46568 * 59.99975 * 1 2 3 30 30 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46938 * 300.00083 * 1 2 3 32 32 H 1.09005 * 109.47130 * 239.99743 * 2 1 3 33 33 H 1.09000 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46964 * 300.00338 * 3 2 1 35 35 H 1.08996 * 109.47104 * 60.00018 * 3 2 1 36 36 H 1.09000 * 109.47118 * 305.00155 * 4 2 1 37 37 H 1.09001 * 109.47261 * 184.99591 * 4 2 1 38 38 H 1.07994 * 125.56515 * 0.02884 * 6 5 4 39 39 H 0.97000 * 120.00574 * 355.50676 * 12 10 9 40 40 H 1.07992 * 119.96811 * 0.02831 * 14 13 12 41 41 H 1.07998 * 119.92663 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.96202 * 180.27987 * 16 15 14 43 43 H 0.96991 * 120.00021 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.07032 * 0.02562 * 27 13 12 45 45 H 1.08006 * 126.45666 * 180.24812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1733 1.1889 6 6 0.4947 -2.7063 1.6748 7 7 0.4921 -4.0393 1.4289 8 1 -0.2147 -4.6579 1.6710 9 6 1.6612 -4.3695 0.7812 10 6 2.0570 -5.7097 0.3367 11 8 3.1198 -5.8724 -0.2334 12 7 1.2438 -6.7611 0.5595 13 6 1.5762 -8.0217 0.0537 14 6 0.5762 -8.8802 -0.3874 15 6 0.9042 -10.1255 -0.8877 16 6 2.2268 -10.5196 -0.9557 17 6 3.2305 -9.6685 -0.5111 18 8 4.5292 -10.0586 -0.5734 19 6 4.7695 -11.3257 -0.9667 20 1 3.9537 -11.9539 -1.2927 21 6 6.0640 -11.8223 -0.9528 22 7 7.0577 -11.0573 -0.5553 23 14 6.3970 -13.5776 -1.4984 24 1 6.6697 -13.5990 -2.9579 25 1 7.5753 -14.1082 -0.7669 26 1 5.2107 -14.4209 -1.2040 27 6 2.9047 -8.4169 -0.0079 28 6 2.3893 -3.2095 0.6213 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 -0.2912 -2.1580 2.1728 39 1 0.4278 -6.6435 1.0707 40 1 -0.4581 -8.5732 -0.3399 41 1 0.1254 -10.7907 -1.2303 42 1 2.4802 -11.4920 -1.3515 43 1 7.9632 -11.4048 -0.5452 44 1 3.6836 -7.7520 0.3349 45 1 3.3552 -3.1184 0.1468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840269925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:56 Heat of formation + Delta-G solvation = -3.080727 kcal Electronic energy + Delta-G solvation = -26362.150370 eV Core-core repulsion = 22538.756487 eV Total energy + Delta-G solvation = -3823.393883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56914 -39.81369 -38.46525 -36.62405 -36.45521 -34.17291 -32.24276 -31.67806 -30.14141 -29.28253 -28.37010 -27.39028 -26.42833 -25.29220 -23.55894 -21.88501 -21.23978 -20.67093 -20.17366 -19.41276 -18.70883 -18.03495 -17.10367 -15.97356 -15.60458 -15.35629 -15.24377 -15.07013 -14.57872 -14.26974 -14.21165 -13.93917 -13.78932 -13.65406 -13.53487 -13.38813 -12.84919 -12.78550 -12.52215 -12.49412 -12.10056 -11.76033 -11.73424 -11.52632 -11.24951 -11.18847 -11.05446 -11.00510 -10.82195 -10.80127 -10.45607 -9.91549 -9.78835 -9.20111 -8.94965 -8.81156 -8.32974 -7.71251 -7.19430 -6.40879 -4.00137 1.32631 2.13202 2.33634 2.55775 2.89629 3.12804 3.15530 3.17760 3.21067 3.45033 3.99480 4.55263 4.64012 4.69449 4.77477 4.81709 4.84175 5.09806 5.13632 5.23617 5.33108 5.39551 5.46802 5.50480 5.60331 5.60689 5.70657 5.75009 5.79830 5.86334 5.95068 6.00764 6.06515 6.09895 6.17787 6.21719 6.37790 6.57317 6.67344 6.76234 6.89407 7.02442 7.07660 7.18182 7.34210 7.47522 7.65007 7.78003 8.03665 8.28302 9.03695 9.74903 10.76914 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.002173 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.425797 B =12883.085084 C =13840.356188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.172 4.172 6 C 0.023 3.977 7 N -0.541 5.541 8 H 0.415 0.585 9 C -0.047 4.047 10 C 0.580 3.420 11 O -0.496 6.496 12 N -0.670 5.670 13 C 0.174 3.826 14 C -0.237 4.237 15 C -0.058 4.058 16 C -0.244 4.244 17 C 0.167 3.833 18 O -0.172 6.172 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.185 4.185 28 C -0.099 4.099 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.168 0.832 39 H 0.398 0.602 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.135 0.865 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 18.691 4.983 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.079 4.079 5 C -0.179 4.179 6 C -0.113 4.113 7 N -0.137 5.137 8 H 0.252 0.748 9 C -0.160 4.160 10 C 0.368 3.632 11 O -0.369 6.369 12 N -0.314 5.314 13 C 0.081 3.919 14 C -0.258 4.258 15 C -0.077 4.077 16 C -0.264 4.264 17 C 0.112 3.888 18 O -0.075 6.075 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.207 4.207 28 C -0.126 4.126 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.185 0.815 39 H 0.232 0.768 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.387 18.569 4.659 24.562 hybrid contribution -0.780 -1.163 0.086 1.403 sum -16.167 17.406 4.745 24.225 Atomic orbital electron populations 1.21866 0.95491 1.01890 1.01146 1.21108 0.95869 0.95595 0.98677 1.21853 1.01059 0.96084 1.01521 1.20025 1.00870 0.89519 0.97486 1.19386 0.95993 0.95805 1.06702 1.21786 1.00740 0.82976 1.05765 1.41961 1.17001 1.08801 1.45937 0.74787 1.20407 0.90516 0.94863 1.10215 1.17168 0.84347 0.82309 0.79423 1.90942 1.21562 1.83976 1.40414 1.43209 1.25605 1.07571 1.55027 1.17132 0.93250 0.83606 0.97904 1.20244 0.96952 0.96778 1.11782 1.20492 0.95500 0.94803 0.96915 1.21187 0.92597 1.02352 1.10278 1.19134 0.85417 0.92292 0.91974 1.83997 1.18686 1.30572 1.74217 1.21350 0.94503 0.86466 1.44520 0.88970 1.25317 0.94420 1.00022 0.96843 1.70055 0.99965 1.36190 1.43177 0.85698 0.78530 0.80324 0.78772 1.19868 1.20273 1.19198 1.20194 0.95217 0.96344 1.08898 1.21244 1.00048 0.89742 1.01532 0.93190 0.92324 0.93046 0.91009 0.92641 0.92874 0.92840 0.91558 0.91126 0.81519 0.76794 0.87518 0.87013 0.85396 0.91990 0.84729 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.91 37.16 0.33 -0.65 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.96 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.04 -0.32 5.18 -27.88 -0.14 -0.46 16 5 C -0.17 -1.66 4.82 -105.02 -0.51 -2.17 16 6 C 0.02 0.18 10.43 -16.91 -0.18 0.00 16 7 N -0.54 -4.57 6.00 -9.39 -0.06 -4.63 16 8 H 0.42 2.19 8.20 -40.82 -0.33 1.85 16 9 C -0.05 -0.60 7.05 -81.98 -0.58 -1.18 16 10 C 0.58 9.57 7.63 -12.87 -0.10 9.47 16 11 O -0.50 -10.62 14.32 5.19 0.07 -10.55 16 12 N -0.67 -9.91 5.33 -11.07 -0.06 -9.97 16 13 C 0.17 3.30 6.29 -83.74 -0.53 2.77 16 14 C -0.24 -4.06 9.96 -39.34 -0.39 -4.45 16 15 C -0.06 -1.07 10.03 -39.64 -0.40 -1.46 16 16 C -0.24 -5.42 9.17 -39.36 -0.36 -5.78 16 17 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 18 O -0.17 -5.13 9.76 0.05 0.00 -5.13 16 19 C -0.39 -11.23 9.49 30.88 0.29 -10.94 16 20 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 23 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 C -0.19 -4.34 8.63 -39.20 -0.34 -4.68 16 28 C -0.10 -1.25 10.59 -39.11 -0.41 -1.66 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 6.42 -51.93 -0.33 0.09 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.40 4.04 7.96 -40.82 -0.32 3.72 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 3.40 6.22 -52.49 -0.33 3.07 16 45 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -35.25 377.67 -8.30 -43.55 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.10 Total: 8.12 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.59 Total: -17.79 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.64 Total: -39.75 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.25 -8.30 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840269925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.470 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds