Wall clock time and date at job start Tue Mar 31 2020 15:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.53003 * 109.47135 * 120.00009 * 2 1 3 5 5 C 1.50704 * 109.46977 * 64.99890 * 4 2 1 6 6 C 1.35452 * 126.06479 * 269.99892 * 5 4 2 7 7 N 1.35545 * 108.87287 * 179.76815 * 6 5 4 8 8 H 0.96999 * 125.68231 * 180.23188 * 7 6 5 9 9 C 1.37663 * 108.64086 * 0.38086 * 7 6 5 10 10 C 1.46643 * 126.23281 * 179.88902 * 9 7 6 11 11 O 1.21703 * 119.99682 * 179.68615 * 10 9 7 12 12 N 1.34775 * 119.99835 * 359.68760 * 10 9 7 13 13 C 1.39837 * 120.00010 * 175.49951 * 12 10 9 14 14 C 1.38986 * 120.04071 * 215.11519 * 13 12 10 15 15 C 1.38150 * 120.06218 * 179.97438 * 14 13 12 16 16 C 1.38174 * 120.14268 * 359.76855 * 15 14 13 17 17 C 1.38909 * 120.07549 * 0.50913 * 16 15 14 18 18 O 1.35752 * 120.03341 * 179.74546 * 17 16 15 19 19 C 1.34828 * 117.00074 * 354.34276 * 18 17 16 20 20 H 1.08008 * 119.99868 * 5.02935 * 19 18 17 21 21 C 1.38651 * 120.00340 * 185.02501 * 19 18 17 22 22 N 1.31559 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47082 * 90.00542 * 23 21 19 25 25 H 1.48500 * 109.46896 * 210.00036 * 23 21 19 26 26 H 1.48491 * 109.47239 * 330.00215 * 23 21 19 27 27 C 1.38743 * 120.03484 * 35.13672 * 13 12 10 28 28 C 1.37887 * 107.52783 * 359.62205 * 9 7 6 29 29 H 1.09004 * 109.46568 * 59.99975 * 1 2 3 30 30 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46938 * 300.00083 * 1 2 3 32 32 H 1.09005 * 109.47130 * 239.99743 * 2 1 3 33 33 H 1.09000 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46964 * 300.00338 * 3 2 1 35 35 H 1.08996 * 109.47104 * 60.00018 * 3 2 1 36 36 H 1.09000 * 109.47118 * 305.00155 * 4 2 1 37 37 H 1.09001 * 109.47261 * 184.99591 * 4 2 1 38 38 H 1.07994 * 125.56515 * 0.02884 * 6 5 4 39 39 H 0.97000 * 120.00574 * 355.50676 * 12 10 9 40 40 H 1.07992 * 119.96811 * 0.02831 * 14 13 12 41 41 H 1.07998 * 119.92663 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.96202 * 180.27987 * 16 15 14 43 43 H 0.96991 * 120.00021 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.07032 * 0.02562 * 27 13 12 45 45 H 1.08006 * 126.45666 * 180.24812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1733 1.1889 6 6 0.4947 -2.7063 1.6748 7 7 0.4921 -4.0393 1.4289 8 1 -0.2147 -4.6579 1.6710 9 6 1.6612 -4.3695 0.7812 10 6 2.0570 -5.7097 0.3367 11 8 3.1198 -5.8724 -0.2334 12 7 1.2438 -6.7611 0.5595 13 6 1.5762 -8.0217 0.0537 14 6 0.5762 -8.8802 -0.3874 15 6 0.9042 -10.1255 -0.8877 16 6 2.2268 -10.5196 -0.9557 17 6 3.2305 -9.6685 -0.5111 18 8 4.5292 -10.0586 -0.5734 19 6 4.7695 -11.3257 -0.9667 20 1 3.9537 -11.9539 -1.2927 21 6 6.0640 -11.8223 -0.9528 22 7 7.0577 -11.0573 -0.5553 23 14 6.3970 -13.5776 -1.4984 24 1 6.6697 -13.5990 -2.9579 25 1 7.5753 -14.1082 -0.7669 26 1 5.2107 -14.4209 -1.2040 27 6 2.9047 -8.4169 -0.0079 28 6 2.3893 -3.2095 0.6213 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 -0.2912 -2.1580 2.1728 39 1 0.4278 -6.6435 1.0707 40 1 -0.4581 -8.5732 -0.3399 41 1 0.1254 -10.7907 -1.2303 42 1 2.4802 -11.4920 -1.3515 43 1 7.9632 -11.4048 -0.5452 44 1 3.6836 -7.7520 0.3349 45 1 3.3552 -3.1184 0.1468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840269925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:55 Heat of formation + Delta-G solvation = -27.088289 kcal Electronic energy + Delta-G solvation = -26363.191416 eV Core-core repulsion = 22538.756487 eV Total energy + Delta-G solvation = -3824.434929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49877 -41.25929 -40.16383 -38.20593 -37.20383 -35.67912 -34.28213 -32.46360 -31.49688 -30.75563 -29.74853 -27.89749 -27.43267 -27.08148 -24.83872 -23.43608 -22.80741 -21.31104 -21.21758 -20.41236 -20.11640 -19.43711 -18.85225 -17.23897 -17.02403 -16.80197 -16.62463 -16.05529 -15.97207 -15.78319 -15.54282 -15.30406 -15.03046 -14.62368 -14.57341 -14.37053 -14.26011 -14.19647 -13.61098 -13.56316 -13.23330 -13.01332 -12.97945 -12.74406 -12.69145 -12.41124 -12.35518 -12.12817 -11.78700 -11.61237 -11.56395 -11.42344 -11.37914 -10.93921 -10.78879 -9.80686 -9.44054 -9.13897 -8.88402 -8.47723 -6.17753 0.14681 0.62337 0.69431 1.33691 1.44473 1.53009 1.73037 1.85051 2.14754 2.19874 2.24260 2.81211 3.13238 3.44247 3.81829 4.02971 4.10764 4.11651 4.22501 4.29264 4.33156 4.36569 4.37301 4.54325 4.62689 4.70759 4.79462 4.89541 4.92273 4.99019 5.06868 5.09080 5.09549 5.14719 5.17942 5.25448 5.36986 5.39191 5.39721 5.55498 5.59842 5.61184 5.70789 5.79829 5.90324 6.01472 6.15488 6.35560 6.58487 6.95440 7.02105 7.78038 8.76210 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.002173 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.425797 B =12883.085084 C =13840.356188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.038 4.038 5 C -0.186 4.186 6 C 0.060 3.940 7 N -0.520 5.520 8 H 0.434 0.566 9 C -0.074 4.074 10 C 0.578 3.422 11 O -0.560 6.560 12 N -0.652 5.652 13 C 0.181 3.819 14 C -0.202 4.202 15 C -0.047 4.047 16 C -0.253 4.253 17 C 0.126 3.874 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.108 0.892 21 C -0.029 4.029 22 N -0.925 5.925 23 Si 1.026 2.974 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.247 1.247 27 C -0.215 4.215 28 C -0.117 4.117 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.216 0.784 39 H 0.425 0.575 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.125 0.875 43 H 0.272 0.728 44 H 0.098 0.902 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.267 19.274 5.890 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.076 4.076 5 C -0.192 4.192 6 C -0.077 4.077 7 N -0.117 5.117 8 H 0.275 0.725 9 C -0.187 4.187 10 C 0.369 3.631 11 O -0.438 6.438 12 N -0.298 5.298 13 C 0.087 3.913 14 C -0.223 4.223 15 C -0.066 4.066 16 C -0.273 4.273 17 C 0.075 3.925 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.125 0.875 21 C -0.226 4.226 22 N -0.563 5.563 23 Si 0.844 3.156 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.170 1.170 27 C -0.236 4.236 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.232 0.768 39 H 0.264 0.736 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.143 0.857 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.221 19.169 5.601 29.140 hybrid contribution 0.655 -1.016 -0.122 1.215 sum -20.566 18.153 5.478 27.973 Atomic orbital electron populations 1.21840 0.94325 1.01880 1.02012 1.21085 0.96831 0.95861 0.97503 1.21834 1.00757 0.95513 1.02227 1.20046 1.00462 0.88565 0.98537 1.19606 0.96464 0.96118 1.07016 1.22498 1.00341 0.82275 1.02587 1.41871 1.15826 1.09598 1.44438 0.72536 1.19730 0.92964 0.92692 1.13326 1.17709 0.83402 0.83775 0.78247 1.90927 1.24363 1.85051 1.43438 1.43028 1.26338 1.05689 1.54750 1.17296 0.91846 0.85306 0.96847 1.20897 0.98974 0.95155 1.07226 1.21058 0.94578 0.95838 0.95090 1.21353 0.93839 1.01807 1.10265 1.19678 0.85199 0.93799 0.93860 1.83967 1.21392 1.31609 1.77204 1.21936 0.95529 0.86743 1.44818 0.87461 1.26764 0.93734 1.05406 0.96695 1.70231 1.00595 1.39072 1.46395 0.84500 0.78977 0.73636 0.78487 1.18809 1.19672 1.17044 1.20212 0.96936 0.95681 1.10806 1.21338 0.99793 0.91376 1.02003 0.93342 0.92651 0.91228 0.93460 0.93214 0.92743 0.91513 0.89201 0.92283 0.76757 0.73569 0.81632 0.81950 0.85690 0.91866 0.88338 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.91 71.98 0.64 -0.84 16 2 C -0.09 -1.27 2.91 -10.79 -0.03 -1.30 16 3 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 4 C -0.04 -0.53 5.18 29.85 0.15 -0.37 16 5 C -0.19 -3.26 4.82 -20.12 -0.10 -3.36 16 6 C 0.06 0.68 10.43 83.48 0.87 1.55 16 7 N -0.52 -6.98 6.00 -183.63 -1.10 -8.08 16 8 H 0.43 2.48 8.20 -92.71 -0.76 1.72 16 9 C -0.07 -1.87 7.05 40.34 0.28 -1.59 16 10 C 0.58 19.66 7.63 86.44 0.66 20.31 16 11 O -0.56 -26.24 14.32 -4.36 -0.06 -26.30 16 12 N -0.65 -18.34 5.33 -307.14 -1.64 -19.98 16 13 C 0.18 6.69 6.29 38.16 0.24 6.93 16 14 C -0.20 -6.00 9.96 22.43 0.22 -5.77 16 15 C -0.05 -1.55 10.03 22.23 0.22 -1.32 16 16 C -0.25 -11.24 9.17 22.42 0.21 -11.04 16 17 C 0.13 6.84 6.64 22.56 0.15 6.99 16 18 O -0.24 -15.35 9.76 -22.74 -0.22 -15.57 16 19 C -0.41 -25.30 9.49 67.92 0.64 -24.66 16 20 H 0.11 5.88 5.20 -2.91 -0.02 5.86 16 21 C -0.03 -1.74 5.49 84.83 0.47 -1.27 16 22 N -0.92 -60.06 13.67 21.61 0.30 -59.76 16 23 Si 1.03 44.37 29.55 68.60 2.03 46.40 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 27 C -0.21 -10.74 8.63 22.52 0.19 -10.55 16 28 C -0.12 -3.07 10.59 22.57 0.24 -2.83 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.60 6.42 -2.39 -0.02 0.59 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.22 0.46 8.06 -2.91 -0.02 0.44 16 39 H 0.43 7.03 7.96 -92.71 -0.74 6.29 16 40 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 41 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.13 5.53 5.63 -2.91 -0.02 5.52 16 43 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 44 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 45 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -90.58 377.67 4.57 -86.02 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.46 Total: 27.42 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 5.73 Total: -30.13 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.44 Total: -87.82 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.28 Total: -41.88 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -90.58 4.57 -86.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840269925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.928 kcal (2) G-P(sol) polarization free energy of solvation -90.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds