Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 C 1.53000 * 109.47117 * 120.00318 * 2 1 3 5 5 N 1.46501 * 109.47136 * 65.00073 * 4 2 1 6 6 C 1.46496 * 119.99549 * 264.30854 * 5 4 2 7 7 C 1.50704 * 109.47318 * 270.00247 * 6 5 4 8 8 H 1.08008 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00181 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47203 * 89.99709 * 11 9 7 13 13 H 1.48499 * 109.46791 * 209.99786 * 11 9 7 14 14 H 1.48500 * 109.47036 * 329.99484 * 11 9 7 15 15 C 1.34773 * 119.99995 * 84.31008 * 5 4 2 16 16 O 1.21592 * 119.99668 * 184.71847 * 15 5 4 17 17 C 1.47551 * 120.00363 * 4.71959 * 15 5 4 18 18 C 1.38914 * 120.29548 * 54.48403 * 17 15 5 19 19 C 1.40554 * 118.06381 * 180.25116 * 18 17 15 20 20 C 1.40552 * 121.12467 * 180.32009 * 19 18 17 21 21 C 1.36147 * 119.63489 * 179.68627 * 20 19 18 22 22 C 1.39330 * 120.83583 * 359.67780 * 21 20 19 23 23 C 1.36144 * 121.07590 * 0.04424 * 22 21 20 24 24 C 1.40528 * 119.82386 * 359.97438 * 23 22 21 25 25 N 1.33817 * 120.73971 * 180.02562 * 24 23 22 26 26 C 1.31380 * 121.66247 * 179.97438 * 25 24 23 27 27 O 1.35409 * 119.31782 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47293 * 59.99851 * 1 2 3 29 29 H 1.08995 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46699 * 299.99600 * 1 2 3 31 31 H 1.09004 * 109.46699 * 240.00400 * 2 1 3 32 32 H 1.09000 * 109.47664 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47011 * 300.00321 * 3 2 1 34 34 H 1.08997 * 109.46980 * 60.00079 * 3 2 1 35 35 H 1.08996 * 109.47118 * 304.99315 * 4 2 1 36 36 H 1.09000 * 109.46684 * 184.99783 * 4 2 1 37 37 H 1.09000 * 109.47542 * 30.00024 * 6 5 4 38 38 H 1.08999 * 109.47315 * 150.00162 * 6 5 4 39 39 H 0.97001 * 119.99863 * 180.02562 * 10 9 7 40 40 H 1.07998 * 120.96908 * 359.97438 * 18 17 15 41 41 H 1.07999 * 120.18326 * 359.40212 * 20 19 18 42 42 H 1.08002 * 119.58534 * 179.70015 * 21 20 19 43 43 H 1.08002 * 119.46292 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.08684 * 179.97438 * 23 22 21 45 45 H 0.96706 * 113.99802 * 269.97524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.4362 -2.5873 1.8689 7 6 0.7716 -2.9987 3.2794 8 1 1.7892 -2.9291 3.6347 9 6 -0.2203 -3.4650 4.1159 10 7 -1.4592 -3.5503 3.6830 11 14 0.1954 -3.9743 5.8644 12 1 0.0612 -2.8023 6.7664 13 1 -0.7354 -5.0453 6.3025 14 1 1.5907 -4.4801 5.9141 15 6 2.4149 -3.0134 0.5123 16 8 2.0496 -4.1667 0.3909 17 6 3.6929 -2.5778 -0.0828 18 6 4.6577 -1.9606 0.7033 19 6 5.8556 -1.5598 0.0870 20 6 6.8778 -0.9358 0.8226 21 6 8.0285 -0.5658 0.1961 22 6 8.2091 -0.8039 -1.1648 23 6 7.2422 -1.4111 -1.9063 24 6 6.0398 -1.8079 -1.2967 25 7 5.0774 -2.4066 -2.0080 26 6 3.9466 -2.7854 -1.4566 27 8 3.0052 -3.3878 -2.2211 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 -0.2923 -1.7768 1.8904 38 1 0.0171 -3.4384 1.3321 39 1 -2.1572 -3.8780 4.2716 40 1 4.4903 -1.7896 1.7564 41 1 6.7492 -0.7467 1.8781 42 1 8.8115 -0.0819 0.7612 43 1 9.1310 -0.5015 -1.6392 44 1 7.3989 -1.5875 -2.9603 45 1 2.3774 -2.7748 -2.6277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842479598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -21.847182 kcal Electronic energy + Delta-G solvation = -28612.001878 eV Core-core repulsion = 24787.794220 eV Total energy + Delta-G solvation = -3824.207658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15666 -39.24510 -38.10283 -36.36515 -35.83969 -33.69500 -33.64997 -32.30156 -30.52144 -29.85554 -27.69683 -26.92603 -25.79433 -24.59098 -23.87781 -22.71467 -22.20634 -20.39639 -19.45526 -19.00065 -18.06380 -17.03395 -16.52691 -16.28764 -15.98658 -15.69307 -14.99150 -14.71136 -14.60669 -14.45775 -14.30141 -13.91839 -13.74555 -13.44549 -13.23216 -12.98198 -12.51563 -12.19337 -12.11908 -12.07821 -11.81013 -11.63265 -11.57977 -11.48705 -11.40319 -11.08762 -10.97011 -10.80855 -10.60326 -10.56282 -10.29720 -10.17410 -9.80295 -9.64683 -9.04153 -8.70941 -8.47020 -8.38200 -7.71396 -6.08600 -4.13721 0.16231 0.54254 1.77499 2.55069 3.26701 3.30038 3.34501 3.37769 3.50648 3.77410 3.91876 4.37853 4.42000 4.48369 4.64024 4.68025 4.88785 4.95876 5.01076 5.08391 5.10211 5.21638 5.25945 5.32253 5.56648 5.62258 5.69706 5.72736 5.76399 5.80511 5.82525 6.03057 6.06997 6.08580 6.13637 6.21932 6.23288 6.25550 6.45684 6.59241 6.60663 7.00564 7.38341 7.45278 7.49591 7.77850 7.87278 8.17942 8.29296 8.81631 8.97558 9.51474 10.99256 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.003971 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.199173 B = 7048.794414 C = 7470.918772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.107 3.893 5 N -0.586 5.586 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.553 3.447 16 O -0.514 6.514 17 C -0.173 4.173 18 C -0.014 4.014 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.100 4.100 24 C 0.159 3.841 25 N -0.501 5.501 26 C 0.383 3.617 27 O -0.465 6.465 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.049 12.444 -8.834 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.201 4.201 4 C -0.017 4.017 5 N -0.317 5.317 6 C 0.127 3.873 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.180 4.180 18 C -0.039 4.039 19 C -0.118 4.118 20 C -0.101 4.101 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.119 4.119 24 C 0.037 3.963 25 N -0.220 5.220 26 C 0.189 3.811 27 O -0.272 6.272 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.170 0.830 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 15.052 11.101 -9.563 21.006 hybrid contribution -0.252 0.201 1.717 1.747 sum 14.800 11.302 -7.846 20.207 Atomic orbital electron populations 1.21869 0.94400 1.02944 1.01145 1.21543 0.97125 0.95868 0.98499 1.21766 1.00519 0.95892 1.01885 1.21760 0.99442 0.82276 0.98252 1.48160 1.26699 1.06570 1.50280 1.19408 0.80133 0.96281 0.91513 1.21429 0.94779 1.43924 0.96763 0.92520 1.24912 0.94882 0.95353 0.98773 1.69923 1.00402 1.46399 1.36369 0.86518 0.78397 0.78316 0.84329 1.20629 1.21049 1.19913 1.17709 0.83121 0.85982 0.79481 1.90817 1.71410 1.17946 1.58834 1.21364 0.98558 1.02851 0.95241 1.21921 0.90578 0.91142 1.00302 1.18775 0.95810 1.02638 0.94527 1.21053 0.92571 0.96656 0.99837 1.20895 0.97864 1.00791 0.94905 1.20923 0.98868 0.97516 0.94115 1.20789 0.91455 0.98982 1.00672 1.18599 0.93202 0.95126 0.89358 1.67465 1.01763 1.13099 1.39687 1.19129 0.87496 0.88037 0.86418 1.84783 1.41408 1.34472 1.66536 0.93497 0.91481 0.92380 0.92310 0.93054 0.92781 0.92310 0.89432 0.91617 0.94232 0.93727 0.92659 0.82986 0.84907 0.85434 0.85283 0.84671 0.73955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.34 37.16 0.31 -1.77 16 2 C -0.11 -1.47 3.08 -90.62 -0.28 -1.75 16 3 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 4 C 0.11 1.66 4.60 -4.04 -0.02 1.64 16 5 N -0.59 -11.81 2.19 -176.29 -0.39 -12.19 16 6 C 0.25 6.11 4.28 -5.19 -0.02 6.09 16 7 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 11 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.55 11.61 6.75 -12.46 -0.08 11.53 16 16 O -0.51 -13.29 16.31 1.90 0.03 -13.26 16 17 C -0.17 -2.96 4.81 -104.71 -0.50 -3.46 16 18 C -0.01 -0.19 7.48 -38.46 -0.29 -0.48 16 19 C -0.12 -1.47 5.74 -106.80 -0.61 -2.08 16 20 C -0.08 -0.80 9.77 -39.46 -0.39 -1.19 16 21 C -0.13 -1.03 9.96 -39.93 -0.40 -1.43 16 22 C -0.09 -0.78 9.94 -39.93 -0.40 -1.18 16 23 C -0.10 -1.07 9.97 -39.47 -0.39 -1.47 16 24 C 0.16 2.17 6.61 -84.79 -0.56 1.61 16 25 N -0.50 -7.81 10.33 -10.76 -0.11 -7.92 16 26 C 0.38 6.35 7.73 -16.61 -0.13 6.22 16 27 O -0.47 -7.56 12.73 -21.30 -0.27 -7.83 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.80 7.94 -51.93 -0.41 0.38 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 36 H 0.07 0.89 4.46 -51.93 -0.23 0.66 16 37 H 0.04 0.98 6.64 -51.93 -0.34 0.64 16 38 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.15 1.98 7.28 -52.49 -0.38 1.59 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.40 4.49 9.06 45.56 0.41 4.90 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -34.50 374.95 -8.65 -43.15 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.44 Total: 3.22 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.84 Total: -2.07 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.24 Total: -45.25 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.24 Total: -21.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.50 -8.65 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842479598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.303 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds