Wall clock time and date at job start Tue Mar 31 2020 16:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 C 1.53000 * 109.47117 * 120.00318 * 2 1 3 5 5 N 1.46501 * 109.47136 * 65.00073 * 4 2 1 6 6 C 1.46496 * 119.99549 * 264.30854 * 5 4 2 7 7 C 1.50704 * 109.47318 * 270.00247 * 6 5 4 8 8 H 1.08008 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00181 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47203 * 89.99709 * 11 9 7 13 13 H 1.48499 * 109.46791 * 209.99786 * 11 9 7 14 14 H 1.48500 * 109.47036 * 329.99484 * 11 9 7 15 15 C 1.34773 * 119.99995 * 84.31008 * 5 4 2 16 16 O 1.21592 * 119.99668 * 184.71847 * 15 5 4 17 17 C 1.47551 * 120.00363 * 4.71959 * 15 5 4 18 18 C 1.38914 * 120.29548 * 54.48403 * 17 15 5 19 19 C 1.40554 * 118.06381 * 180.25116 * 18 17 15 20 20 C 1.40552 * 121.12467 * 180.32009 * 19 18 17 21 21 C 1.36147 * 119.63489 * 179.68627 * 20 19 18 22 22 C 1.39330 * 120.83583 * 359.67780 * 21 20 19 23 23 C 1.36144 * 121.07590 * 0.04424 * 22 21 20 24 24 C 1.40528 * 119.82386 * 359.97438 * 23 22 21 25 25 N 1.33817 * 120.73971 * 180.02562 * 24 23 22 26 26 C 1.31380 * 121.66247 * 179.97438 * 25 24 23 27 27 O 1.35409 * 119.31782 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47293 * 59.99851 * 1 2 3 29 29 H 1.08995 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46699 * 299.99600 * 1 2 3 31 31 H 1.09004 * 109.46699 * 240.00400 * 2 1 3 32 32 H 1.09000 * 109.47664 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47011 * 300.00321 * 3 2 1 34 34 H 1.08997 * 109.46980 * 60.00079 * 3 2 1 35 35 H 1.08996 * 109.47118 * 304.99315 * 4 2 1 36 36 H 1.09000 * 109.46684 * 184.99783 * 4 2 1 37 37 H 1.09000 * 109.47542 * 30.00024 * 6 5 4 38 38 H 1.08999 * 109.47315 * 150.00162 * 6 5 4 39 39 H 0.97001 * 119.99863 * 180.02562 * 10 9 7 40 40 H 1.07998 * 120.96908 * 359.97438 * 18 17 15 41 41 H 1.07999 * 120.18326 * 359.40212 * 20 19 18 42 42 H 1.08002 * 119.58534 * 179.70015 * 21 20 19 43 43 H 1.08002 * 119.46292 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.08684 * 179.97438 * 23 22 21 45 45 H 0.96706 * 113.99802 * 269.97524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.4362 -2.5873 1.8689 7 6 0.7716 -2.9987 3.2794 8 1 1.7892 -2.9291 3.6347 9 6 -0.2203 -3.4650 4.1159 10 7 -1.4592 -3.5503 3.6830 11 14 0.1954 -3.9743 5.8644 12 1 0.0612 -2.8023 6.7664 13 1 -0.7354 -5.0453 6.3025 14 1 1.5907 -4.4801 5.9141 15 6 2.4149 -3.0134 0.5123 16 8 2.0496 -4.1667 0.3909 17 6 3.6929 -2.5778 -0.0828 18 6 4.6577 -1.9606 0.7033 19 6 5.8556 -1.5598 0.0870 20 6 6.8778 -0.9358 0.8226 21 6 8.0285 -0.5658 0.1961 22 6 8.2091 -0.8039 -1.1648 23 6 7.2422 -1.4111 -1.9063 24 6 6.0398 -1.8079 -1.2967 25 7 5.0774 -2.4066 -2.0080 26 6 3.9466 -2.7854 -1.4566 27 8 3.0052 -3.3878 -2.2211 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 -0.2923 -1.7768 1.8904 38 1 0.0171 -3.4384 1.3321 39 1 -2.1572 -3.8780 4.2716 40 1 4.4903 -1.7896 1.7564 41 1 6.7492 -0.7467 1.8781 42 1 8.8115 -0.0819 0.7612 43 1 9.1310 -0.5015 -1.6392 44 1 7.3989 -1.5875 -2.9603 45 1 2.3774 -2.7748 -2.6277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842479598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:09 Heat of formation + Delta-G solvation = -46.340883 kcal Electronic energy + Delta-G solvation = -28613.064004 eV Core-core repulsion = 24787.794220 eV Total energy + Delta-G solvation = -3825.269784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.26828 -40.63806 -39.25005 -37.82273 -36.85608 -35.44248 -34.78401 -34.05725 -31.62630 -30.75135 -29.49744 -28.02415 -27.14201 -25.97990 -25.05213 -24.21500 -23.14290 -21.65279 -20.69431 -20.22275 -19.13089 -18.61683 -18.30617 -17.54451 -17.37704 -16.90899 -16.33567 -16.10078 -15.87610 -15.71278 -15.28458 -15.08292 -14.81489 -14.69729 -14.45813 -14.25173 -14.17552 -13.74114 -13.48707 -13.12378 -13.07773 -12.99984 -12.72144 -12.63205 -12.56941 -12.42542 -12.40760 -12.20249 -12.18862 -11.91706 -11.70761 -11.63850 -11.46513 -11.10475 -10.62255 -10.48403 -9.75842 -9.45653 -9.23184 -8.21883 -6.36633 -0.80853 -0.46715 0.85857 1.36514 1.40008 1.48596 1.51929 1.88853 2.17243 2.40940 2.46575 2.96828 3.08050 3.32796 3.51292 3.53524 3.80492 3.83275 3.95412 3.99412 4.16992 4.20153 4.31565 4.36360 4.54611 4.59964 4.63390 4.67348 4.79239 4.84549 4.87742 4.99368 5.01214 5.05682 5.06541 5.19301 5.25648 5.32273 5.38015 5.39854 5.43317 5.49527 5.56757 5.82652 5.86668 6.06181 6.41383 6.62373 6.71407 6.73430 7.22270 7.38313 8.85124 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.003971 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.199173 B = 7048.794414 C = 7470.918772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.104 3.896 5 N -0.584 5.584 6 C 0.264 3.736 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.966 3.034 12 H -0.261 1.261 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.554 3.446 16 O -0.580 6.580 17 C -0.199 4.199 18 C -0.001 4.001 19 C -0.123 4.123 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.071 4.071 23 C -0.120 4.120 24 C 0.139 3.861 25 N -0.511 5.511 26 C 0.367 3.633 27 O -0.486 6.486 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.036 0.964 38 H -0.006 1.006 39 H 0.267 0.733 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.168 0.832 44 H 0.143 0.857 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 15.470 -7.844 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.192 4.192 4 C -0.019 4.019 5 N -0.313 5.313 6 C 0.144 3.856 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.790 3.210 12 H -0.186 1.186 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.341 3.659 16 O -0.460 6.460 17 C -0.206 4.206 18 C -0.026 4.026 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.090 4.090 23 C -0.139 4.139 24 C 0.018 3.982 25 N -0.231 5.231 26 C 0.174 3.826 27 O -0.296 6.296 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.076 0.924 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.185 0.815 43 H 0.186 0.814 44 H 0.161 0.839 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 19.216 14.198 -8.584 25.387 hybrid contribution -1.330 -0.631 1.348 1.996 sum 17.886 13.567 -7.237 23.587 Atomic orbital electron populations 1.21828 0.95406 1.00716 1.02132 1.21486 0.96175 0.97727 0.97040 1.21700 1.01216 0.93337 1.02921 1.22046 1.00998 0.79476 0.99338 1.48070 1.25140 1.08636 1.49456 1.18846 0.81972 0.94290 0.90519 1.21735 0.94794 1.44139 0.97764 0.92595 1.25822 0.94682 0.95175 1.03221 1.70052 1.01424 1.47128 1.37994 0.85443 0.77933 0.78409 0.79206 1.18584 1.20937 1.19747 1.18276 0.84127 0.85009 0.78494 1.90760 1.73332 1.20649 1.61246 1.20894 0.97318 1.06451 0.95889 1.22074 0.90511 0.89645 1.00418 1.18925 0.95949 1.03166 0.94419 1.21380 0.92160 0.96095 1.00987 1.21416 0.97799 0.98758 0.94958 1.21439 0.99083 0.94353 0.94165 1.21016 0.91069 1.00227 1.01595 1.19135 0.93761 0.95219 0.90130 1.67488 1.01736 1.13612 1.40220 1.19114 0.88012 0.89209 0.86292 1.84731 1.42126 1.35886 1.66812 0.91277 0.95276 0.92573 0.92658 0.91843 0.91421 0.91618 0.89856 0.89150 0.94651 0.98779 0.92439 0.81911 0.82512 0.81525 0.81440 0.83906 0.72376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.34 71.98 0.60 -3.62 16 2 C -0.10 -2.77 3.08 -10.79 -0.03 -2.81 16 3 C -0.13 -2.54 9.19 71.98 0.66 -1.88 16 4 C 0.10 3.25 4.60 86.38 0.40 3.65 16 5 N -0.58 -24.98 2.19 -829.91 -1.82 -26.79 16 6 C 0.26 14.15 4.28 85.64 0.37 14.52 16 7 C -0.55 -31.07 9.39 25.60 0.24 -30.83 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.58 5.46 84.66 0.46 1.05 16 10 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 11 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.55 24.94 6.75 86.70 0.59 25.53 16 16 O -0.58 -32.65 16.31 -0.77 -0.01 -32.67 16 17 C -0.20 -7.06 4.81 -19.92 -0.10 -7.15 16 18 C 0.00 -0.02 7.48 23.00 0.17 0.15 16 19 C -0.12 -2.85 5.74 -21.28 -0.12 -2.98 16 20 C -0.09 -1.32 9.77 22.35 0.22 -1.10 16 21 C -0.11 -1.15 9.96 22.05 0.22 -0.93 16 22 C -0.07 -0.79 9.94 22.04 0.22 -0.57 16 23 C -0.12 -2.20 9.97 22.34 0.22 -1.98 16 24 C 0.14 3.59 6.61 40.27 0.27 3.86 16 25 N -0.51 -16.09 10.33 -301.42 -3.11 -19.20 16 26 C 0.37 12.78 7.73 85.50 0.66 13.44 16 27 O -0.49 -17.18 12.73 -83.79 -1.07 -18.25 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.05 6.34 -2.39 -0.02 1.04 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 36 H 0.09 2.38 4.46 -2.39 -0.01 2.37 16 37 H 0.04 1.90 6.64 -2.39 -0.02 1.88 16 38 H -0.01 -0.37 7.36 -2.39 -0.02 -0.39 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.16 4.02 7.28 -2.91 -0.02 4.00 16 41 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 43 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.42 10.53 9.06 -74.05 -0.67 9.86 16 Total: -1.00 -81.64 374.95 1.69 -79.95 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.35 Total: 17.59 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.04 Total: 8.36 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.64 Total: -101.47 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.08 Total: -50.91 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -81.64 1.69 -79.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842479598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.613 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds