Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46719 * 2 1 4 4 C 1.52998 * 109.46990 * 240.00344 * 2 1 3 5 5 C 1.50689 * 109.47317 * 119.99727 * 2 1 3 6 6 C 1.34185 * 126.10900 * 75.00524 * 5 2 1 7 7 O 1.35023 * 107.25579 * 179.71930 * 6 5 2 8 8 C 1.34195 * 107.73718 * 0.41341 * 7 6 5 9 9 N 1.38655 * 125.69480 * 179.83791 * 8 7 6 10 10 C 1.34768 * 120.00000 * 359.69770 * 9 8 7 11 11 O 1.21270 * 120.00207 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99792 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.46977 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.12547 * 264.99579 * 13 12 10 15 15 C 1.38611 * 120.25133 * 180.30203 * 14 13 12 16 16 C 1.38661 * 120.49834 * 359.43795 * 15 14 13 17 17 C 1.37598 * 120.24462 * 0.56532 * 16 15 14 18 18 C 1.40693 * 120.13116 * 85.02206 * 13 12 10 19 19 C 1.41397 * 120.24389 * 359.95203 * 18 13 12 20 20 H 1.08003 * 119.99955 * 334.08061 * 19 18 13 21 21 C 1.39940 * 120.00210 * 154.08724 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.62218 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.63321 * 21 19 18 24 24 H 1.48496 * 109.47262 * 59.99447 * 23 21 19 25 25 H 1.48504 * 109.47090 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46694 * 299.99081 * 23 21 19 27 27 N 1.30951 * 108.60299 * 359.58068 * 8 7 6 28 28 H 1.08997 * 109.47277 * 299.99625 * 1 2 3 29 29 H 1.09004 * 109.47378 * 60.00409 * 1 2 3 30 30 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46840 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47343 * 299.99859 * 3 2 1 33 33 H 1.08992 * 109.47348 * 59.99989 * 3 2 1 34 34 H 1.09000 * 109.47053 * 299.99785 * 4 2 1 35 35 H 1.09000 * 109.47473 * 59.99895 * 4 2 1 36 36 H 1.08994 * 109.47101 * 179.97438 * 4 2 1 37 37 H 1.08006 * 126.37272 * 359.96930 * 6 5 2 38 38 H 0.97001 * 119.99411 * 179.70091 * 9 8 7 39 39 H 1.08998 * 109.47152 * 59.99513 * 12 10 9 40 40 H 1.09003 * 109.46597 * 299.99418 * 12 10 9 41 41 H 1.08001 * 119.87531 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.75611 * 179.70394 * 15 14 13 43 43 H 1.07998 * 119.87738 * 180.30536 * 16 15 14 44 44 H 1.08001 * 120.12776 * 179.74520 * 17 16 15 45 45 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2304 6 6 2.0315 -2.0367 1.4335 7 8 2.5697 -2.2556 2.6524 8 6 2.8833 -1.0626 3.1810 9 7 3.4565 -0.8551 4.4264 10 6 3.7402 -1.9059 5.2211 11 8 3.4938 -3.0329 4.8472 12 6 4.3627 -1.6803 6.5749 13 6 4.5774 -3.0071 7.2565 14 6 3.6360 -3.4925 8.1355 15 6 3.8338 -4.7096 8.7686 16 6 4.9740 -5.4571 8.5162 17 6 5.9284 -4.9914 7.6413 18 6 5.7410 -3.7542 6.9972 19 6 6.7148 -3.2659 6.0957 20 1 6.4287 -2.5823 5.3100 21 6 8.0492 -3.6683 6.2216 22 7 8.4631 -4.2232 7.3316 23 14 9.2394 -3.4127 4.8047 24 1 9.3296 -1.9645 4.4890 25 1 10.5815 -3.9199 5.1880 26 1 8.7534 -4.1503 3.6109 27 7 2.5626 -0.1277 2.3220 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1298 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 1.6715 -2.7894 0.7478 38 1 3.6532 0.0464 4.7255 39 1 3.7000 -1.0629 7.1812 40 1 5.3210 -1.1749 6.4545 41 1 2.7420 -2.9207 8.3361 42 1 3.0921 -5.0806 9.4605 43 1 5.1155 -6.4064 9.0113 44 1 6.8178 -5.5732 7.4492 45 1 9.3879 -4.5025 7.4187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847104585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = -21.478742 kcal Electronic energy + Delta-G solvation = -27474.281356 eV Core-core repulsion = 23650.089675 eV Total energy + Delta-G solvation = -3824.191681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.39705 -41.12209 -39.23588 -38.26541 -36.35664 -35.52824 -34.74107 -33.53264 -31.38005 -30.25642 -28.70502 -28.10610 -27.93867 -26.92038 -24.33105 -23.81894 -22.84522 -22.28136 -21.28385 -20.06294 -19.20744 -18.92682 -17.98212 -17.95663 -17.41187 -17.20100 -16.36040 -16.25569 -15.82773 -15.49362 -15.17322 -15.16810 -14.98748 -14.92194 -14.39386 -14.34534 -13.59089 -13.41098 -13.21410 -12.97971 -12.94974 -12.91647 -12.79103 -12.59566 -12.53959 -12.53118 -12.15744 -12.14682 -12.06626 -11.94205 -11.45154 -11.38632 -11.34764 -11.27920 -11.22094 -11.05450 -9.26479 -9.24922 -9.21299 -8.62807 -6.33071 0.36131 0.83805 1.05074 1.21826 1.30965 1.33705 1.42922 1.51737 1.90195 2.16447 2.17311 2.75842 3.32411 3.67470 3.75867 3.96856 4.08321 4.14488 4.21338 4.34135 4.36994 4.42378 4.57916 4.69382 4.74248 4.76997 4.80535 4.84567 4.91350 4.95303 5.02141 5.05228 5.05534 5.16749 5.17762 5.23055 5.34625 5.42571 5.44574 5.48179 5.52267 5.73769 5.89394 6.02773 6.13357 6.20448 6.38553 6.70458 6.79715 6.95376 6.97090 7.08250 8.33464 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.003252 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.591016 B = 8608.823661 C = 9882.705861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 C -0.127 4.127 4 C -0.139 4.139 5 C 0.013 3.987 6 C -0.101 4.101 7 O -0.213 6.213 8 C 0.406 3.594 9 N -0.608 5.608 10 C 0.517 3.483 11 O -0.527 6.527 12 C -0.058 4.058 13 C -0.195 4.195 14 C -0.086 4.086 15 C -0.243 4.243 16 C -0.115 4.115 17 C -0.194 4.194 18 C 0.098 3.902 19 C -0.485 4.485 20 H 0.071 0.929 21 C 0.040 3.960 22 N -0.822 5.822 23 Si 0.965 3.035 24 H -0.253 1.253 25 H -0.265 1.265 26 H -0.274 1.274 27 N -0.507 5.507 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.243 0.757 38 H 0.451 0.549 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 10.913 -12.900 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 C -0.185 4.185 4 C -0.197 4.197 5 C -0.108 4.108 6 C -0.172 4.172 7 O -0.098 6.098 8 C 0.110 3.890 9 N -0.270 5.270 10 C 0.306 3.694 11 O -0.399 6.399 12 C -0.098 4.098 13 C -0.197 4.197 14 C -0.104 4.104 15 C -0.262 4.262 16 C -0.133 4.133 17 C -0.213 4.213 18 C 0.096 3.904 19 C -0.514 4.514 20 H 0.089 0.911 21 C -0.175 4.175 22 N -0.448 5.448 23 Si 0.787 3.213 24 H -0.177 1.177 25 H -0.189 1.189 26 H -0.199 1.199 27 N -0.246 5.246 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.259 0.741 38 H 0.295 0.705 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.880 10.553 -12.821 19.852 hybrid contribution 0.942 -0.808 -0.130 1.248 sum -9.938 9.745 -12.950 19.012 Atomic orbital electron populations 1.21880 0.91932 1.02702 1.02682 1.19119 0.96315 0.95238 0.88166 1.21684 1.00460 0.94067 1.02240 1.21936 1.00861 1.00886 0.96005 1.21996 1.01571 0.91128 0.96062 1.25252 1.06394 0.99809 0.85700 1.84703 1.61931 1.33323 1.29814 1.21985 0.97501 0.79380 0.90088 1.42832 1.60538 1.13297 1.10325 1.21993 0.76539 0.83379 0.87453 1.90774 1.50393 1.24406 1.74280 1.20308 1.02765 0.97535 0.89159 1.19443 0.98605 0.97492 1.04167 1.20777 0.97353 0.95934 0.96352 1.20739 0.99722 0.98321 1.07431 1.20971 0.94936 0.98997 0.98381 1.21309 0.99674 0.97582 1.02759 1.17717 0.91773 0.90411 0.90478 1.19595 0.92662 1.26099 1.13093 0.91107 1.26588 1.00633 0.92489 0.97780 1.69859 1.18500 1.30982 1.25473 0.85506 0.77175 0.80113 0.78531 1.17727 1.18880 1.19936 1.70619 1.21319 1.30136 1.02498 0.93578 0.89603 0.91907 0.93865 0.90323 0.93105 0.91406 0.89543 0.93437 0.74118 0.70516 0.85012 0.86952 0.86087 0.86613 0.87697 0.88579 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.46 71.98 0.61 -1.30 16 2 C 0.01 0.22 0.95 -52.93 -0.05 0.17 16 3 C -0.13 -2.24 8.04 71.98 0.58 -1.66 16 4 C -0.14 -1.91 8.19 71.98 0.59 -1.32 16 5 C 0.01 0.32 5.53 41.20 0.23 0.55 16 6 C -0.10 -2.73 11.43 66.89 0.76 -1.97 16 7 O -0.21 -7.81 9.09 12.23 0.11 -7.70 16 8 C 0.41 13.74 8.88 178.94 1.59 15.33 16 9 N -0.61 -18.58 5.39 -423.80 -2.28 -20.86 16 10 C 0.52 19.61 7.42 87.66 0.65 20.26 16 11 O -0.53 -25.49 14.79 17.90 0.26 -25.22 16 12 C -0.06 -2.06 5.18 29.10 0.15 -1.91 16 13 C -0.20 -9.00 4.43 -19.41 -0.09 -9.09 16 14 C -0.09 -3.72 9.66 22.22 0.21 -3.50 16 15 C -0.24 -10.78 10.05 22.46 0.23 -10.56 16 16 C -0.11 -5.55 10.02 22.22 0.22 -5.33 16 17 C -0.19 -10.58 8.68 22.73 0.20 -10.38 16 18 C 0.10 5.28 5.56 -21.29 -0.12 5.17 16 19 C -0.48 -25.78 8.14 23.46 0.19 -25.59 16 20 H 0.07 3.65 6.68 -2.91 -0.02 3.63 16 21 C 0.04 2.04 5.16 85.26 0.44 2.48 16 22 N -0.82 -43.16 10.97 21.82 0.24 -42.92 16 23 Si 0.97 39.16 29.59 68.60 2.03 41.19 16 24 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 N -0.51 -15.28 10.70 -301.69 -3.23 -18.50 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.07 0.79 7.50 -2.39 -0.02 0.78 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.24 4.41 7.65 -2.91 -0.02 4.38 16 38 H 0.45 9.87 8.82 -92.71 -0.82 9.05 16 39 H 0.13 3.42 8.05 -2.39 -0.02 3.40 16 40 H 0.11 3.86 7.06 -2.39 -0.02 3.84 16 41 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 43 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 44 H 0.10 5.51 6.22 -2.91 -0.02 5.49 16 45 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -72.13 377.18 3.72 -68.40 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.19 Total: 34.26 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 6.40 Total: -28.65 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -5.27 Total: -82.28 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: 0.38 Total: -32.92 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -72.13 3.72 -68.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847104585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.926 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds