Wall clock time and date at job start Tue Mar 31 2020 16:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 C 1.52997 * 109.47406 * 240.00004 * 2 1 3 5 5 N 1.46497 * 109.46695 * 119.99709 * 2 1 3 6 6 C 1.34952 * 126.03869 * 75.26807 * 5 2 1 7 7 C 1.35322 * 107.74744 * 180.14198 * 6 5 2 8 8 C 1.50697 * 126.03938 * 179.87191 * 7 6 5 9 9 O 1.45201 * 109.46944 * 269.71278 * 8 7 6 10 10 C 1.34804 * 116.99925 * 180.02562 * 9 8 7 11 11 O 1.21526 * 120.00158 * 359.97438 * 10 9 8 12 12 C 1.47288 * 120.00213 * 180.02562 * 10 9 8 13 13 C 1.39296 * 120.28603 * 354.83939 * 12 10 9 14 14 C 1.38205 * 120.08627 * 180.27692 * 13 12 10 15 15 C 1.38842 * 120.68093 * 359.73704 * 14 13 12 16 16 C 1.37598 * 120.58249 * 0.02562 * 15 14 13 17 17 C 1.40703 * 119.88779 * 0.02562 * 16 15 14 18 18 C 1.40861 * 120.33362 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99855 * 145.73459 * 18 17 16 20 20 C 1.40294 * 120.00053 * 325.74709 * 18 17 16 21 21 N 1.30615 * 119.99944 * 339.67310 * 20 18 17 22 22 Si 1.86800 * 120.00191 * 159.68073 * 20 18 17 23 23 H 1.48501 * 109.47051 * 269.99428 * 22 20 18 24 24 H 1.48500 * 109.47071 * 29.99448 * 22 20 18 25 25 H 1.48504 * 109.46997 * 149.99554 * 22 20 18 26 26 C 1.39873 * 107.91910 * 359.60764 * 7 6 5 27 27 N 1.30842 * 108.20210 * 0.24312 * 26 7 6 28 28 H 1.09001 * 109.47148 * 300.00158 * 1 2 3 29 29 H 1.09001 * 109.46784 * 60.00273 * 1 2 3 30 30 H 1.09001 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46958 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46858 * 299.99961 * 3 2 1 33 33 H 1.09001 * 109.47315 * 59.99944 * 3 2 1 34 34 H 1.09001 * 109.46890 * 300.00212 * 4 2 1 35 35 H 1.08999 * 109.47147 * 59.99594 * 4 2 1 36 36 H 1.08998 * 109.47144 * 180.02562 * 4 2 1 37 37 H 1.08002 * 126.12536 * 359.97438 * 6 5 2 38 38 H 1.08999 * 109.46912 * 149.71684 * 8 7 6 39 39 H 1.09000 * 109.47278 * 29.71196 * 8 7 6 40 40 H 1.08000 * 119.95653 * 0.02562 * 13 12 10 41 41 H 1.07997 * 119.65882 * 179.75950 * 14 13 12 42 42 H 1.07994 * 119.70815 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.05357 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99911 * 355.30114 * 21 20 18 45 45 H 1.07992 * 125.89649 * 180.21849 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0182 -0.6905 1.1962 6 6 2.0212 -2.0250 1.3970 7 6 2.5483 -2.2568 2.6216 8 6 2.7420 -3.6069 3.2624 9 8 1.5577 -3.9540 4.0273 10 6 1.5688 -5.1399 4.6682 11 8 2.5416 -5.8640 4.5894 12 6 0.4016 -5.5585 5.4630 13 6 -0.6723 -4.6903 5.6451 14 6 -1.7629 -5.0853 6.3964 15 6 -1.8064 -6.3477 6.9728 16 6 -0.7632 -7.2293 6.8067 17 6 0.3597 -6.8520 6.0474 18 6 1.4332 -7.7469 5.8718 19 1 1.9851 -7.7527 4.9435 20 6 1.7853 -8.6309 6.9027 21 7 1.4169 -8.3819 8.1309 22 14 2.7811 -10.1641 6.5191 23 1 1.8607 -11.2870 6.2075 24 1 3.6589 -9.9044 5.3498 25 1 3.6154 -10.5196 7.6951 26 6 2.8871 -1.0222 3.1849 27 7 2.5698 -0.0826 2.3314 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 1.6641 -2.7738 0.7054 38 1 3.6061 -3.5734 3.9260 39 1 2.9071 -4.3562 2.4883 40 1 -0.6508 -3.7056 5.2019 41 1 -2.5900 -4.4051 6.5364 42 1 -2.6666 -6.6401 7.5565 43 1 -0.8061 -8.2093 7.2585 44 1 0.9593 -7.5528 8.3413 45 1 3.3331 -0.8706 4.1567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849669897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:19 Heat of formation + Delta-G solvation = -16.692082 kcal Electronic energy + Delta-G solvation = -27104.950772 eV Core-core repulsion = 23280.966656 eV Total energy + Delta-G solvation = -3823.984116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.42304 -41.11137 -39.26957 -37.85269 -37.01642 -35.82642 -32.62070 -31.80104 -31.65659 -31.25309 -28.49367 -28.38345 -27.51926 -26.73762 -24.45666 -23.51439 -22.90121 -21.58323 -21.22077 -20.38572 -19.89278 -18.41593 -17.96013 -17.24493 -17.03589 -16.56189 -16.26115 -15.95938 -15.66763 -15.61970 -15.27179 -14.94781 -14.65580 -14.61559 -14.32481 -14.16394 -13.91062 -13.47706 -13.42444 -13.21589 -13.16609 -13.02443 -12.91427 -12.76384 -12.71792 -12.48470 -12.22291 -12.15597 -12.08388 -11.96592 -11.72668 -11.57304 -11.34087 -10.98130 -10.76697 -10.41554 -9.71639 -9.59952 -9.54356 -9.20151 -6.54796 0.24530 0.79486 0.88133 1.38212 1.48314 1.50547 1.63299 1.78973 1.96820 2.29863 2.41525 2.67604 3.34748 3.47373 3.74084 3.77837 3.86309 3.90560 4.07495 4.23937 4.25838 4.29928 4.39923 4.52721 4.54024 4.57929 4.68703 4.70202 4.78018 4.80509 4.80993 4.82410 4.89196 5.00521 5.06923 5.08567 5.20992 5.23956 5.36898 5.53313 5.57436 5.64536 5.69380 5.83219 5.92838 6.06767 6.16782 6.27451 6.64111 6.70187 6.79591 7.24214 7.97611 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.002694 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.780822 B =10390.732515 C =11255.751968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 C -0.139 4.139 4 C -0.157 4.157 5 N -0.357 5.357 6 C 0.089 3.911 7 C -0.262 4.262 8 C 0.150 3.850 9 O -0.363 6.363 10 C 0.504 3.496 11 O -0.544 6.544 12 C -0.276 4.276 13 C -0.026 4.026 14 C -0.247 4.247 15 C -0.063 4.063 16 C -0.222 4.222 17 C 0.099 3.901 18 C -0.504 4.504 19 H 0.084 0.916 20 C 0.000 4.000 21 N -0.806 5.806 22 Si 1.119 2.881 23 H -0.253 1.253 24 H -0.272 1.272 25 H -0.267 1.267 26 C 0.056 3.944 27 N -0.315 5.315 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.196 0.804 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.285 0.715 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 14.291 -16.445 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.086 3.914 3 C -0.196 4.196 4 C -0.215 4.215 5 N -0.139 5.139 6 C -0.060 4.060 7 C -0.274 4.274 8 C 0.075 3.925 9 O -0.282 6.282 10 C 0.355 3.645 11 O -0.438 6.438 12 C -0.279 4.279 13 C -0.044 4.044 14 C -0.266 4.266 15 C -0.081 4.081 16 C -0.241 4.241 17 C 0.096 3.904 18 C -0.531 4.531 19 H 0.102 0.898 20 C -0.217 4.217 21 N -0.429 5.429 22 Si 0.935 3.065 23 H -0.178 1.178 24 H -0.196 1.196 25 H -0.192 1.192 26 C -0.129 4.129 27 N -0.135 5.135 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.213 0.787 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.424 14.148 -16.130 21.460 hybrid contribution -0.374 0.436 -0.039 0.576 sum -0.798 14.584 -16.169 21.790 Atomic orbital electron populations 1.22273 0.91921 1.03365 1.03921 1.21186 0.95197 0.94112 0.80868 1.21895 1.01411 0.92646 1.03662 1.22270 1.01874 1.01520 0.95806 1.49248 1.46317 1.04018 1.14307 1.22591 0.98104 0.87343 0.97916 1.19665 1.16222 0.94316 0.97169 1.20899 0.85492 0.92534 0.93554 1.86632 1.43576 1.37236 1.60728 1.21295 0.87375 0.78470 0.77363 1.90713 1.36594 1.54314 1.62129 1.19075 0.96775 0.96682 1.15325 1.21181 0.91800 0.97367 0.94037 1.20822 1.00606 0.98141 1.07052 1.21213 0.97025 0.93611 0.96265 1.21198 0.95177 0.99939 1.07818 1.17848 0.93097 0.89924 0.89559 1.21175 1.13198 1.14930 1.03759 0.89841 1.28555 0.96936 1.04701 0.91485 1.70468 1.26442 1.25582 1.20435 0.82981 0.75641 0.70969 0.76873 1.17766 1.19643 1.19165 1.24055 0.99189 0.89864 0.99827 1.77277 1.18692 1.22322 0.95228 0.93273 0.87504 0.91877 0.92735 0.88024 0.92691 0.91087 0.87374 0.92249 0.78713 0.91520 0.91131 0.85782 0.84677 0.85108 0.88446 0.90254 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.73 71.98 0.63 -1.37 16 2 C 0.17 2.48 1.24 3.60 0.00 2.48 16 3 C -0.14 -1.89 8.09 71.98 0.58 -1.31 16 4 C -0.16 -1.56 8.29 71.98 0.60 -0.96 16 5 N -0.36 -8.01 3.43 -307.83 -1.06 -9.07 16 6 C 0.09 2.11 10.51 83.54 0.88 2.99 16 7 C -0.26 -7.51 5.74 -20.14 -0.12 -7.63 16 8 C 0.15 5.08 5.96 71.23 0.42 5.50 16 9 O -0.36 -15.09 9.47 -57.15 -0.54 -15.63 16 10 C 0.50 25.01 7.85 70.20 0.55 25.56 16 11 O -0.54 -29.68 13.38 19.75 0.26 -29.42 16 12 C -0.28 -14.05 5.92 -19.71 -0.12 -14.16 16 13 C -0.03 -1.11 9.60 22.52 0.22 -0.90 16 14 C -0.25 -9.87 10.03 22.41 0.22 -9.64 16 15 C -0.06 -2.64 10.01 22.26 0.22 -2.42 16 16 C -0.22 -11.09 7.90 22.72 0.18 -10.91 16 17 C 0.10 5.43 5.16 -21.10 -0.11 5.32 16 18 C -0.50 -28.51 7.62 23.41 0.18 -28.33 16 19 H 0.08 4.96 5.99 -2.91 -0.02 4.95 16 20 C 0.00 0.00 5.01 85.37 0.43 0.43 16 21 N -0.81 -43.94 12.60 21.88 0.28 -43.67 16 22 Si 1.12 45.45 29.98 68.60 2.06 47.50 16 23 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 26 C 0.06 1.56 11.96 85.24 1.02 2.58 16 27 N -0.31 -8.56 11.66 -57.02 -0.66 -9.22 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.95 8.04 -2.39 -0.02 0.93 16 34 H 0.07 0.67 7.36 -2.39 -0.02 0.65 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.20 3.50 7.55 -2.91 -0.02 3.47 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.12 4.84 7.61 -2.91 -0.02 4.82 16 41 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.10 4.99 6.99 -2.91 -0.02 4.97 16 44 H 0.29 16.06 6.62 -92.71 -0.61 15.44 16 45 H 0.19 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -69.74 379.06 7.27 -62.47 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 1.14 Total: 29.80 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 5.79 Total: -32.77 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.45 Total: -61.96 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.28 Total: -45.05 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.06 Total: 47.50 kcal Total: -69.74 7.27 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849669897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.781 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds