Wall clock time and date at job start Tue Mar 31 2020 16:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.53006 * 109.47090 * 240.00103 * 2 1 3 5 5 N 1.46496 * 109.47185 * 120.00101 * 2 1 3 6 6 C 1.34952 * 126.03941 * 75.25973 * 5 2 1 7 7 C 1.35314 * 107.74538 * 180.14744 * 6 5 2 8 8 C 1.50708 * 126.03714 * 179.87024 * 7 6 5 9 9 O 1.45197 * 109.46885 * 269.71710 * 8 7 6 10 10 C 1.34711 * 116.99264 * 180.02562 * 9 8 7 11 11 O 1.21464 * 120.00358 * 359.71940 * 10 9 8 12 12 C 1.47775 * 119.99334 * 179.97438 * 10 9 8 13 13 C 1.39966 * 120.03204 * 359.44483 * 12 10 9 14 14 C 1.38321 * 120.34916 * 179.74560 * 13 12 10 15 15 C 1.37751 * 120.41741 * 0.55248 * 14 13 12 16 16 C 1.40753 * 120.05652 * 359.70696 * 15 14 13 17 17 C 1.41439 * 120.18002 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99633 * 150.17281 * 17 16 15 19 19 C 1.39933 * 119.99726 * 330.17188 * 17 16 15 20 20 N 1.30833 * 119.99463 * 161.72757 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 341.73184 * 19 17 16 22 22 H 1.48507 * 109.46930 * 95.41426 * 21 19 17 23 23 H 1.48499 * 109.47106 * 215.41037 * 21 19 17 24 24 H 1.48498 * 109.47122 * 335.41119 * 21 19 17 25 25 C 1.39053 * 120.02611 * 179.72340 * 12 10 9 26 26 C 1.39866 * 107.92144 * 359.61063 * 7 6 5 27 27 N 1.30833 * 108.20495 * 0.24148 * 26 7 6 28 28 H 1.09000 * 109.46759 * 300.00063 * 1 2 3 29 29 H 1.09000 * 109.47344 * 59.99523 * 1 2 3 30 30 H 1.08996 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47214 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47494 * 299.99992 * 3 2 1 33 33 H 1.09000 * 109.47255 * 60.00241 * 3 2 1 34 34 H 1.09000 * 109.46545 * 300.00246 * 4 2 1 35 35 H 1.08994 * 109.47085 * 59.99753 * 4 2 1 36 36 H 1.09000 * 109.47143 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.12230 * 359.97438 * 6 5 2 38 38 H 1.09001 * 109.46669 * 149.71729 * 8 7 6 39 39 H 1.08997 * 109.46676 * 29.71595 * 8 7 6 40 40 H 1.07997 * 119.82376 * 0.02562 * 13 12 10 41 41 H 1.08003 * 119.78697 * 180.28109 * 14 13 12 42 42 H 1.08004 * 119.97586 * 179.72406 * 15 14 13 43 43 H 0.97007 * 119.99698 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.20725 * 359.95045 * 25 12 10 45 45 H 1.08003 * 125.89679 * 180.22244 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0212 -2.0251 1.3969 7 6 2.5483 -2.2568 2.6214 8 6 2.7420 -3.6070 3.2623 9 8 1.5576 -3.9541 4.0271 10 6 1.5689 -5.1392 4.6675 11 8 2.5393 -5.8650 4.5850 12 6 0.3982 -5.5586 5.4658 13 6 -0.7179 -4.7199 5.5665 14 6 -1.8193 -5.1083 6.3077 15 6 -1.8264 -6.3191 6.9644 16 6 -0.7112 -7.1737 6.8794 17 6 -0.7158 -8.4178 7.5522 18 1 -0.1563 -9.2503 7.1517 19 6 -1.4453 -8.5700 8.7366 20 7 -1.7508 -9.7669 9.1674 21 14 -1.9831 -7.0641 9.7023 22 1 -3.3718 -6.7016 9.3211 23 1 -1.9310 -7.3637 11.1559 24 1 -1.0740 -5.9301 9.3978 25 6 0.4067 -6.7843 6.1224 26 6 2.8871 -1.0223 3.1847 27 7 2.5699 -0.0827 2.3313 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 1.6639 -2.7737 0.7053 38 1 3.6062 -3.5736 3.9258 39 1 2.9071 -4.3563 2.4880 40 1 -0.7209 -3.7666 5.0591 41 1 -2.6775 -4.4560 6.3755 42 1 -2.6884 -6.6132 7.5448 43 1 -2.2568 -9.8724 9.9883 44 1 1.2671 -7.4332 6.0507 45 1 3.3333 -0.8708 4.1566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849695671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:24 Heat of formation + Delta-G solvation = 2.694172 kcal Electronic energy + Delta-G solvation = -26568.286593 eV Core-core repulsion = 22745.143128 eV Total energy + Delta-G solvation = -3823.143465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.57297 -39.83677 -37.68266 -37.17748 -35.85734 -33.70326 -31.56822 -30.86593 -30.61822 -30.07151 -27.96756 -27.87208 -26.19272 -25.18198 -23.36805 -22.67608 -20.74993 -20.37324 -20.25352 -19.64239 -17.91900 -17.18485 -16.64078 -16.13610 -15.82719 -15.54133 -15.29766 -14.89793 -14.67182 -14.44280 -14.00685 -13.74677 -13.68062 -13.41827 -13.01697 -12.84540 -12.76723 -12.71231 -12.63755 -12.45654 -12.23981 -12.07462 -12.01104 -11.65604 -11.60604 -11.53656 -11.07415 -10.85418 -10.75354 -10.58187 -10.25613 -10.10009 -9.85922 -9.68210 -9.57069 -9.25374 -8.67350 -7.95422 -7.78620 -7.01205 -4.56417 1.66477 1.72164 2.17423 2.43220 2.50549 3.05028 3.16898 3.24138 3.39802 3.50363 3.92411 3.98710 4.27256 4.38055 4.44286 4.54420 4.70514 4.96494 5.03176 5.04647 5.11221 5.17632 5.24426 5.28202 5.31737 5.32829 5.41251 5.50096 5.57249 5.67172 5.71057 5.82243 5.91676 5.96411 6.16782 6.34215 6.46623 6.62415 6.65563 6.81021 6.82646 6.96092 7.18039 7.40870 7.49204 7.53224 7.71542 7.88520 8.26173 8.37662 8.49923 8.69547 10.00968 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.002254 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.558599 B =12418.953865 C =12813.049162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 C -0.143 4.143 4 C -0.161 4.161 5 N -0.362 5.362 6 C 0.083 3.917 7 C -0.244 4.244 8 C 0.146 3.854 9 O -0.351 6.351 10 C 0.512 3.488 11 O -0.521 6.521 12 C -0.096 4.096 13 C -0.190 4.190 14 C -0.090 4.090 15 C -0.212 4.212 16 C 0.078 3.922 17 C -0.444 4.444 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.804 5.804 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.243 1.243 25 C -0.134 4.134 26 C 0.067 3.933 27 N -0.295 5.295 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.172 0.828 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.286 0.714 44 H 0.117 0.883 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 18.583 -16.852 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 C -0.200 4.200 4 C -0.219 4.219 5 N -0.144 5.144 6 C -0.064 4.064 7 C -0.255 4.255 8 C 0.071 3.929 9 O -0.268 6.268 10 C 0.359 3.641 11 O -0.412 6.412 12 C -0.097 4.097 13 C -0.209 4.209 14 C -0.108 4.108 15 C -0.232 4.232 16 C 0.075 3.925 17 C -0.472 4.472 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.427 5.427 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.153 4.153 26 C -0.119 4.119 27 N -0.115 5.115 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.190 0.810 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.705 19.512 -17.093 26.363 hybrid contribution -0.256 -0.530 0.677 0.897 sum 4.449 18.982 -16.416 25.487 Atomic orbital electron populations 1.22275 0.92760 1.03400 1.03451 1.20749 0.94522 0.93739 0.81292 1.21904 1.02127 0.92899 1.03115 1.22262 1.02358 1.01179 0.96091 1.48887 1.47345 1.04067 1.14098 1.22267 0.99243 0.86649 0.98237 1.19695 1.14496 0.95151 0.96173 1.20906 0.86332 0.91623 0.94004 1.86683 1.42323 1.37606 1.60182 1.21781 0.87443 0.78247 0.76665 1.90757 1.35600 1.53681 1.61122 1.18793 0.92273 0.97311 1.01300 1.20619 0.94367 0.99951 1.06005 1.20586 0.96978 0.95988 0.97281 1.21259 0.98706 0.97246 1.05979 1.17650 0.90011 0.92723 0.92069 1.19474 1.25350 0.96244 1.06104 0.88805 1.26154 0.92195 0.97442 0.97801 1.69693 1.28095 1.24227 1.20725 0.86343 0.80268 0.82598 0.77314 1.19498 1.21580 1.16617 1.21285 0.98283 0.94702 1.01068 1.23828 0.98980 0.89921 0.99204 1.77338 1.17881 1.21864 0.94394 0.91436 0.90363 0.91593 0.91660 0.90965 0.90932 0.91464 0.90001 0.91461 0.81042 0.90606 0.91010 0.87289 0.88027 0.87716 0.90308 0.86469 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.73 37.16 0.32 -0.73 16 2 C 0.18 1.31 1.24 -131.82 -0.16 1.15 16 3 C -0.14 -0.96 8.09 37.16 0.30 -0.66 16 4 C -0.16 -0.85 8.29 37.16 0.31 -0.54 16 5 N -0.36 -3.76 3.43 -48.65 -0.17 -3.93 16 6 C 0.08 0.89 10.51 -17.22 -0.18 0.71 16 7 C -0.24 -2.99 5.74 -105.05 -0.60 -3.60 16 8 C 0.15 2.01 5.95 36.01 0.21 2.22 16 9 O -0.35 -6.07 9.44 -40.52 -0.38 -6.46 16 10 C 0.51 10.34 7.90 34.63 0.27 10.61 16 11 O -0.52 -11.33 16.12 -19.24 -0.31 -11.64 16 12 C -0.10 -2.09 5.87 -105.05 -0.62 -2.71 16 13 C -0.19 -3.91 9.62 -38.90 -0.37 -4.28 16 14 C -0.09 -1.88 10.01 -39.73 -0.40 -2.28 16 15 C -0.21 -4.95 7.17 -38.81 -0.28 -5.23 16 16 C 0.08 1.96 5.10 -106.87 -0.55 1.42 16 17 C -0.44 -11.81 9.57 -37.73 -0.36 -12.17 16 18 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 19 C 0.08 2.15 5.40 -17.34 -0.09 2.05 16 20 N -0.80 -21.03 13.93 55.55 0.77 -20.26 16 21 Si 0.91 20.24 24.52 -169.99 -4.17 16.07 16 22 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.24 -5.55 6.86 56.52 0.39 -5.16 16 25 C -0.13 -3.20 9.34 -38.42 -0.36 -3.56 16 26 C 0.07 0.81 11.96 -17.37 -0.21 0.60 16 27 N -0.29 -3.63 11.66 30.62 0.36 -3.28 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.07 0.33 7.36 -51.93 -0.38 -0.05 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.17 1.39 7.55 -52.49 -0.40 0.99 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 41 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.11 2.41 4.72 -52.48 -0.25 2.16 16 43 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 44 H 0.12 2.80 7.64 -52.49 -0.40 2.39 16 45 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -30.06 378.90 -7.43 -37.50 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.49 Total: 3.28 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.76 Total: -17.00 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.96 Total: -27.46 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.69 Total: -18.09 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.06 -7.43 -37.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849695671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.190 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds