Wall clock time and date at job start Tue Mar 31 2020 16:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.53006 * 109.47090 * 240.00103 * 2 1 3 5 5 N 1.46496 * 109.47185 * 120.00101 * 2 1 3 6 6 C 1.34952 * 126.03941 * 75.25973 * 5 2 1 7 7 C 1.35314 * 107.74538 * 180.14744 * 6 5 2 8 8 C 1.50708 * 126.03714 * 179.87024 * 7 6 5 9 9 O 1.45197 * 109.46885 * 269.71710 * 8 7 6 10 10 C 1.34711 * 116.99264 * 180.02562 * 9 8 7 11 11 O 1.21464 * 120.00358 * 359.71940 * 10 9 8 12 12 C 1.47775 * 119.99334 * 179.97438 * 10 9 8 13 13 C 1.39966 * 120.03204 * 359.44483 * 12 10 9 14 14 C 1.38321 * 120.34916 * 179.74560 * 13 12 10 15 15 C 1.37751 * 120.41741 * 0.55248 * 14 13 12 16 16 C 1.40753 * 120.05652 * 359.70696 * 15 14 13 17 17 C 1.41439 * 120.18002 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99633 * 150.17281 * 17 16 15 19 19 C 1.39933 * 119.99726 * 330.17188 * 17 16 15 20 20 N 1.30833 * 119.99463 * 161.72757 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 341.73184 * 19 17 16 22 22 H 1.48507 * 109.46930 * 95.41426 * 21 19 17 23 23 H 1.48499 * 109.47106 * 215.41037 * 21 19 17 24 24 H 1.48498 * 109.47122 * 335.41119 * 21 19 17 25 25 C 1.39053 * 120.02611 * 179.72340 * 12 10 9 26 26 C 1.39866 * 107.92144 * 359.61063 * 7 6 5 27 27 N 1.30833 * 108.20495 * 0.24148 * 26 7 6 28 28 H 1.09000 * 109.46759 * 300.00063 * 1 2 3 29 29 H 1.09000 * 109.47344 * 59.99523 * 1 2 3 30 30 H 1.08996 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47214 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47494 * 299.99992 * 3 2 1 33 33 H 1.09000 * 109.47255 * 60.00241 * 3 2 1 34 34 H 1.09000 * 109.46545 * 300.00246 * 4 2 1 35 35 H 1.08994 * 109.47085 * 59.99753 * 4 2 1 36 36 H 1.09000 * 109.47143 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.12230 * 359.97438 * 6 5 2 38 38 H 1.09001 * 109.46669 * 149.71729 * 8 7 6 39 39 H 1.08997 * 109.46676 * 29.71595 * 8 7 6 40 40 H 1.07997 * 119.82376 * 0.02562 * 13 12 10 41 41 H 1.08003 * 119.78697 * 180.28109 * 14 13 12 42 42 H 1.08004 * 119.97586 * 179.72406 * 15 14 13 43 43 H 0.97007 * 119.99698 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.20725 * 359.95045 * 25 12 10 45 45 H 1.08003 * 125.89679 * 180.22244 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0212 -2.0251 1.3969 7 6 2.5483 -2.2568 2.6214 8 6 2.7420 -3.6070 3.2623 9 8 1.5576 -3.9541 4.0271 10 6 1.5689 -5.1392 4.6675 11 8 2.5393 -5.8650 4.5850 12 6 0.3982 -5.5586 5.4658 13 6 -0.7179 -4.7199 5.5665 14 6 -1.8193 -5.1083 6.3077 15 6 -1.8264 -6.3191 6.9644 16 6 -0.7112 -7.1737 6.8794 17 6 -0.7158 -8.4178 7.5522 18 1 -0.1563 -9.2503 7.1517 19 6 -1.4453 -8.5700 8.7366 20 7 -1.7508 -9.7669 9.1674 21 14 -1.9831 -7.0641 9.7023 22 1 -3.3718 -6.7016 9.3211 23 1 -1.9310 -7.3637 11.1559 24 1 -1.0740 -5.9301 9.3978 25 6 0.4067 -6.7843 6.1224 26 6 2.8871 -1.0223 3.1847 27 7 2.5699 -0.0827 2.3313 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 1.6639 -2.7737 0.7053 38 1 3.6062 -3.5736 3.9258 39 1 2.9071 -4.3563 2.4880 40 1 -0.7209 -3.7666 5.0591 41 1 -2.6775 -4.4560 6.3755 42 1 -2.6884 -6.6132 7.5448 43 1 -2.2568 -9.8724 9.9883 44 1 1.2671 -7.4332 6.0507 45 1 3.3333 -0.8708 4.1566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849695671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:23 Heat of formation + Delta-G solvation = -12.608767 kcal Electronic energy + Delta-G solvation = -26568.950178 eV Core-core repulsion = 22745.143128 eV Total energy + Delta-G solvation = -3823.807050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41019 -41.37285 -39.40465 -37.90026 -37.27360 -35.58325 -32.88093 -32.19249 -31.78361 -31.63563 -28.48802 -28.36230 -27.45758 -26.83606 -24.92451 -23.50383 -22.53935 -21.94421 -21.21109 -20.37867 -19.65995 -18.31478 -18.03030 -17.66882 -17.23524 -16.88892 -16.48897 -16.23115 -15.60578 -15.56399 -15.22120 -14.89733 -14.69208 -14.57292 -14.53757 -14.41990 -13.89677 -13.61778 -13.53492 -13.36126 -13.20135 -13.15086 -12.98711 -12.84280 -12.74350 -12.68966 -12.34319 -12.20657 -12.15125 -11.82315 -11.78140 -11.62265 -11.48466 -11.36188 -11.05535 -10.39726 -9.71770 -9.63261 -9.57147 -8.91419 -6.55165 -0.01622 0.71825 0.80820 1.26823 1.33792 1.42356 1.48381 1.51623 1.69971 2.12118 2.22452 2.60106 3.36538 3.40552 3.76061 3.80046 3.84401 3.88465 4.00557 4.09648 4.23661 4.25923 4.42840 4.46432 4.54127 4.59802 4.61410 4.70704 4.71870 4.80779 4.82700 4.84323 4.86082 4.87392 5.01955 5.10524 5.12419 5.23047 5.25739 5.34629 5.38197 5.61215 5.63943 5.70446 5.82172 6.08607 6.09052 6.28331 6.61649 6.67883 6.73197 6.82715 8.17116 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.002254 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.558599 B =12418.953865 C =12813.049162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 C -0.139 4.139 4 C -0.157 4.157 5 N -0.358 5.358 6 C 0.091 3.909 7 C -0.265 4.265 8 C 0.146 3.854 9 O -0.346 6.346 10 C 0.518 3.482 11 O -0.543 6.543 12 C -0.103 4.103 13 C -0.164 4.164 14 C -0.087 4.087 15 C -0.214 4.214 16 C 0.063 3.937 17 C -0.484 4.484 18 H 0.055 0.945 19 C 0.047 3.953 20 N -0.845 5.845 21 Si 0.962 3.038 22 H -0.247 1.247 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.156 4.156 26 C 0.058 3.942 27 N -0.318 5.318 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.198 0.802 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.296 0.704 44 H 0.101 0.899 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 22.000 -18.684 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 C -0.197 4.197 4 C -0.215 4.215 5 N -0.140 5.140 6 C -0.058 4.058 7 C -0.277 4.277 8 C 0.072 3.928 9 O -0.263 6.263 10 C 0.366 3.634 11 O -0.435 6.435 12 C -0.104 4.104 13 C -0.183 4.183 14 C -0.105 4.105 15 C -0.234 4.234 16 C 0.061 3.939 17 C -0.513 4.513 18 H 0.073 0.927 19 C -0.168 4.168 20 N -0.471 5.471 21 Si 0.785 3.215 22 H -0.171 1.171 23 H -0.203 1.203 24 H -0.175 1.175 25 C -0.176 4.176 26 C -0.128 4.128 27 N -0.139 5.139 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.215 0.785 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.317 22.958 -18.951 29.954 hybrid contribution 0.248 -1.388 0.985 1.720 sum 3.565 21.571 -17.967 28.298 Atomic orbital electron populations 1.22268 0.91930 1.03447 1.03851 1.21153 0.95158 0.94024 0.80954 1.21893 1.01391 0.92799 1.03583 1.22269 1.01864 1.01577 0.95763 1.49248 1.46290 1.04176 1.14280 1.22662 0.97835 0.87271 0.98011 1.19639 1.16560 0.94356 0.97104 1.21112 0.85039 0.92728 0.93901 1.86654 1.44078 1.35657 1.59876 1.21449 0.86549 0.78908 0.76542 1.90751 1.36243 1.54610 1.61874 1.19000 0.93686 0.96664 1.01035 1.21054 0.93091 1.00220 1.03976 1.21044 0.98371 0.95365 0.95699 1.21455 0.98018 0.97835 1.06068 1.17743 0.91112 0.92676 0.92407 1.19421 1.27370 0.96409 1.08129 0.92670 1.26860 0.91987 1.00039 0.97942 1.69720 1.29749 1.25822 1.21832 0.85536 0.80594 0.78858 0.76557 1.17133 1.20338 1.17519 1.21228 0.97907 0.95883 1.02589 1.24112 0.98953 0.89876 0.99832 1.77308 1.18720 1.22550 0.95277 0.93260 0.87752 0.91678 0.92744 0.88235 0.92704 0.90905 0.87606 0.92238 0.78528 0.90370 0.90153 0.84189 0.83608 0.87215 0.89391 0.88128 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.73 71.98 0.63 -0.99 16 2 C 0.17 2.04 1.24 3.60 0.00 2.04 16 3 C -0.14 -1.61 8.09 71.98 0.58 -1.03 16 4 C -0.16 -1.16 8.29 71.98 0.60 -0.56 16 5 N -0.36 -6.74 3.43 -307.84 -1.06 -7.80 16 6 C 0.09 1.72 10.51 83.54 0.88 2.59 16 7 C -0.26 -6.03 5.74 -20.14 -0.12 -6.14 16 8 C 0.15 3.77 5.95 71.24 0.42 4.20 16 9 O -0.35 -11.22 9.44 -56.21 -0.53 -11.75 16 10 C 0.52 20.37 7.90 70.34 0.56 20.92 16 11 O -0.54 -23.58 16.12 19.95 0.32 -23.26 16 12 C -0.10 -4.37 5.87 -20.14 -0.12 -4.49 16 13 C -0.16 -6.16 9.62 22.71 0.22 -5.94 16 14 C -0.09 -3.27 10.01 22.17 0.22 -3.05 16 15 C -0.21 -9.62 7.17 22.77 0.16 -9.46 16 16 C 0.06 3.22 5.10 -21.32 -0.11 3.11 16 17 C -0.48 -27.26 9.57 23.47 0.22 -27.04 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.05 2.47 5.40 85.25 0.46 2.93 16 20 N -0.85 -45.95 13.93 21.82 0.30 -45.65 16 21 Si 0.96 41.21 24.52 68.60 1.68 42.90 16 22 H -0.25 -9.62 6.71 99.48 0.67 -8.95 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.25 -11.01 6.86 99.48 0.68 -10.32 16 25 C -0.16 -7.65 9.34 23.02 0.21 -7.44 16 26 C 0.06 1.33 11.96 85.24 1.02 2.34 16 27 N -0.32 -7.46 11.66 -57.03 -0.66 -8.13 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.83 8.04 -2.39 -0.02 0.81 16 34 H 0.07 0.47 7.36 -2.39 -0.02 0.46 16 35 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.20 2.54 7.55 -2.91 -0.02 2.52 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.14 4.46 7.59 -2.91 -0.02 4.44 16 41 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.11 4.79 4.72 -2.91 -0.01 4.78 16 43 H 0.30 14.33 8.30 -92.70 -0.77 13.56 16 44 H 0.10 5.13 7.64 -2.91 -0.02 5.10 16 45 H 0.20 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.59 378.90 6.83 -60.76 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.93 Total: 20.93 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 5.85 Total: -27.99 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -1.42 Total: -61.57 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.21 Total: -35.01 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.68 Total: 42.90 kcal Total: -67.59 6.83 -60.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849695671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.147 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds