Wall clock time and date at job start Tue Mar 31 2020 16:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46651 * 2 1 4 4 C 1.52998 * 109.46987 * 119.99787 * 2 1 3 5 5 N 1.46501 * 109.46875 * 174.47776 * 4 2 1 6 6 C 1.46502 * 119.99800 * 275.85153 * 5 4 2 7 7 C 1.50696 * 109.47364 * 279.12618 * 6 5 4 8 8 H 1.08002 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99912 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99629 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00137 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47030 * 89.99937 * 11 9 7 13 13 H 1.48504 * 109.47079 * 209.99675 * 11 9 7 14 14 H 1.48500 * 109.47106 * 329.99651 * 11 9 7 15 15 C 1.34772 * 120.00289 * 95.85539 * 5 4 2 16 16 O 1.21580 * 120.00019 * 6.46968 * 15 5 4 17 17 C 1.47643 * 119.99871 * 186.46993 * 15 5 4 18 18 C 1.40090 * 119.85232 * 330.26830 * 17 15 5 19 19 C 1.36408 * 120.26987 * 180.02562 * 18 17 15 20 20 C 1.39442 * 119.98137 * 0.02562 * 19 18 17 21 21 C 1.47460 * 133.82205 * 179.97438 * 20 19 18 22 22 C 1.41799 * 126.89066 * 359.97438 * 21 20 19 23 23 O 1.21394 * 119.99821 * 359.97438 * 22 21 20 24 24 C 1.38011 * 106.21840 * 180.02562 * 21 20 19 25 25 N 1.34527 * 109.65532 * 0.02562 * 24 21 20 26 26 H 0.97008 * 124.65701 * 180.02562 * 25 24 21 27 27 C 1.38109 * 110.68696 * 359.97438 * 25 24 21 28 28 C 1.38767 * 132.98289 * 179.70653 * 27 25 24 29 29 H 1.08999 * 109.47358 * 299.99589 * 1 2 3 30 30 H 1.08996 * 109.47648 * 60.00379 * 1 2 3 31 31 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47349 * 239.99899 * 2 1 3 33 33 H 1.09002 * 109.47326 * 65.40810 * 3 2 1 34 34 H 1.09002 * 109.46630 * 185.40353 * 3 2 1 35 35 H 1.08996 * 109.47295 * 305.40583 * 3 2 1 36 36 H 1.08993 * 109.47210 * 54.47875 * 4 2 1 37 37 H 1.09003 * 109.47465 * 294.47439 * 4 2 1 38 38 H 1.09004 * 109.47365 * 39.12997 * 6 5 4 39 39 H 1.09001 * 109.47029 * 159.12629 * 6 5 4 40 40 H 0.97004 * 119.99632 * 179.97438 * 10 9 7 41 41 H 1.07995 * 119.86609 * 0.02562 * 18 17 15 42 42 H 1.07996 * 120.00804 * 179.97438 * 19 18 17 43 43 H 1.07994 * 120.00253 * 179.97438 * 22 21 20 44 44 H 1.07999 * 125.17111 * 180.02562 * 24 21 20 45 45 H 1.08000 * 120.15532 * 0.30929 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4989 -0.8374 1.1846 6 6 4.1136 -1.9427 0.4452 7 6 4.1090 -3.1833 1.3006 8 1 3.6904 -3.1516 2.2957 9 6 4.6391 -4.3590 0.8128 10 7 4.6346 -5.4418 1.5591 11 14 5.3638 -4.4136 -0.9080 12 1 6.8089 -4.0773 -0.8474 13 1 5.1961 -5.7769 -1.4727 14 1 4.6624 -3.4303 -1.7719 15 6 4.2756 0.0725 1.8054 16 8 3.7700 0.9201 2.5153 17 6 5.7403 0.0398 1.6233 18 6 6.3853 -1.1790 1.3760 19 6 7.7382 -1.2191 1.2070 20 6 8.4848 -0.0438 1.2808 21 6 9.9212 0.2633 1.1506 22 6 10.9690 -0.6578 0.8967 23 8 10.7201 -1.8384 0.7632 24 6 10.0414 1.6269 1.3266 25 7 8.8277 2.1632 1.5483 26 1 8.6609 3.1067 1.7000 27 6 7.8517 1.1862 1.5293 28 6 6.4757 1.2200 1.7055 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.7577 1.9277 0.9345 34 1 3.1256 1.4441 -0.0968 35 1 1.5996 1.9836 -0.8376 36 1 1.5981 -1.7163 1.3001 37 1 1.7597 -0.1534 2.1365 38 1 3.5476 -2.1285 -0.4676 39 1 5.1405 -1.6818 0.1891 40 1 5.0073 -6.2690 1.2158 41 1 5.8089 -2.0905 1.3189 42 1 8.2311 -2.1611 1.0169 43 1 11.9883 -0.3090 0.8221 44 1 10.9687 2.1793 1.2917 45 1 5.9762 2.1581 1.8975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858827913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:19 Heat of formation + Delta-G solvation = 9.434240 kcal Electronic energy + Delta-G solvation = -28373.139415 eV Core-core repulsion = 24550.288221 eV Total energy + Delta-G solvation = -3822.851194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45910 -39.64679 -38.30909 -36.68916 -35.98468 -34.25936 -32.40135 -32.01724 -29.76573 -29.46397 -28.12863 -26.87375 -25.94855 -24.25582 -23.05001 -22.71680 -21.90115 -19.97830 -19.58237 -18.72801 -17.93060 -17.10144 -16.92462 -15.90594 -15.70023 -15.44124 -14.93681 -14.72372 -14.62231 -14.34702 -14.11545 -14.02310 -13.64971 -13.48728 -13.42994 -13.05606 -12.87707 -12.65859 -12.45878 -12.14796 -11.97237 -11.46458 -11.40238 -11.29543 -10.97085 -10.92346 -10.84568 -10.61685 -10.28826 -10.18497 -9.97361 -9.63826 -9.55535 -9.55101 -9.15273 -8.79491 -8.04300 -7.81267 -7.59296 -6.28378 -4.31588 0.85975 1.44112 1.99977 2.84742 3.16169 3.20549 3.26949 3.30910 3.56749 3.81077 4.23406 4.29007 4.46455 4.62911 4.83890 5.01251 5.05556 5.16663 5.23138 5.26622 5.38708 5.46350 5.67295 5.72111 5.84654 5.92199 5.95995 5.99462 6.04944 6.10200 6.22273 6.28070 6.32458 6.35028 6.45900 6.55925 6.58947 6.66224 6.68663 6.74730 6.93994 7.02890 7.24177 7.27863 7.35139 7.43698 7.80082 8.06876 8.37548 8.77903 8.87841 9.29012 10.82934 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.005193 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.946666 B = 5391.045420 C = 7562.232298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.578 5.578 6 C 0.176 3.824 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.878 5.878 11 Si 0.856 3.144 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.261 1.261 15 C 0.563 3.437 16 O -0.565 6.565 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.039 4.039 21 C -0.300 4.300 22 C 0.401 3.599 23 O -0.475 6.475 24 C 0.138 3.862 25 N -0.565 5.565 26 H 0.419 0.581 27 C 0.049 3.951 28 C -0.067 4.067 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.270 0.730 41 H 0.200 0.800 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.184 0.816 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 16.123 -3.755 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C -0.001 4.001 5 N -0.306 5.306 6 C 0.055 3.945 7 C -0.584 4.584 8 H 0.101 0.899 9 C -0.122 4.122 10 N -0.514 5.514 11 Si 0.682 3.318 12 H -0.187 1.187 13 H -0.205 1.205 14 H -0.185 1.185 15 C 0.352 3.648 16 O -0.446 6.446 17 C -0.113 4.113 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.043 4.043 21 C -0.309 4.309 22 C 0.263 3.737 23 O -0.350 6.350 24 C 0.000 4.000 25 N -0.164 5.164 26 H 0.256 0.744 27 C -0.054 4.054 28 C -0.089 4.089 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.216 0.784 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.201 0.799 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.412 15.794 -3.438 17.389 hybrid contribution 0.467 0.397 -0.801 1.008 sum 6.879 16.191 -4.239 18.095 Atomic orbital electron populations 1.21742 0.95011 1.01773 1.01388 1.21506 0.95522 0.96737 0.99527 1.21756 1.00823 0.95778 1.01115 1.21441 0.80072 1.01103 0.97447 1.47681 1.05882 1.26112 1.50949 1.20760 0.95587 0.85360 0.92772 1.21305 1.41621 0.92335 1.03145 0.89903 1.24888 0.94934 0.95261 0.97162 1.69876 1.43767 1.00926 1.36828 0.87126 0.81109 0.78477 0.85119 1.18726 1.20532 1.18528 1.18051 0.86142 0.81018 0.79592 1.90673 1.75325 1.39082 1.39539 1.19662 0.93577 0.93558 1.04537 1.23032 0.95170 1.01071 0.94115 1.20461 0.93242 0.97140 1.00331 1.19149 0.91760 0.92727 1.00641 1.20536 0.94898 0.94134 1.21363 1.21662 0.92305 0.87575 0.72193 1.90581 1.87307 1.19639 1.37481 1.22484 0.88768 0.93532 0.95203 1.41379 1.05639 1.09796 1.59624 0.74367 1.18033 0.90389 0.88131 1.08817 1.19975 0.89266 0.98551 1.01064 0.92726 0.92969 0.92465 0.91112 0.92396 0.93218 0.93689 0.90003 0.90278 0.95159 0.92176 0.92015 0.78402 0.84851 0.89498 0.79873 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.11 -1.75 3.12 -90.62 -0.28 -2.03 16 3 C -0.14 -2.07 8.28 37.16 0.31 -1.76 16 4 C 0.12 2.24 4.97 -4.04 -0.02 2.22 16 5 N -0.58 -11.98 2.28 -176.25 -0.40 -12.38 16 6 C 0.18 3.92 3.74 -5.19 -0.02 3.90 16 7 C -0.55 -14.16 8.10 -34.44 -0.28 -14.44 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 C 0.08 2.22 5.36 -17.82 -0.10 2.13 16 10 N -0.88 -25.17 13.96 55.43 0.77 -24.40 16 11 Si 0.86 19.80 27.34 -169.99 -4.65 15.15 16 12 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 15 C 0.56 11.84 6.11 -12.42 -0.08 11.76 16 16 O -0.56 -12.47 15.68 5.30 0.08 -12.39 16 17 C -0.11 -2.16 5.59 -104.97 -0.59 -2.75 16 18 C -0.12 -2.43 7.41 -39.55 -0.29 -2.73 16 19 C -0.09 -1.84 9.73 -39.79 -0.39 -2.23 16 20 C -0.04 -0.67 6.24 -104.82 -0.65 -1.32 16 21 C -0.30 -3.90 6.13 -104.86 -0.64 -4.54 16 22 C 0.40 5.07 11.45 32.09 0.37 5.43 16 23 O -0.47 -8.48 16.77 5.46 0.09 -8.39 16 24 C 0.14 1.14 11.82 -16.45 -0.19 0.94 16 25 N -0.56 -5.37 5.94 -10.32 -0.06 -5.43 16 26 H 0.42 2.40 8.96 -40.82 -0.37 2.04 16 27 C 0.05 0.72 7.23 -83.97 -0.61 0.12 16 28 C -0.07 -1.12 9.61 -38.99 -0.37 -1.50 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.83 7.03 -51.93 -0.36 0.46 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 37 H 0.08 1.47 7.19 -51.93 -0.37 1.10 16 38 H 0.03 0.67 7.00 -51.93 -0.36 0.31 16 39 H 0.06 1.34 3.38 -52.85 -0.18 1.16 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.20 4.62 2.91 -52.49 -0.15 4.47 16 42 H 0.13 2.77 7.35 -52.49 -0.39 2.39 16 43 H 0.09 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.13 1.91 7.90 -52.49 -0.41 1.49 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -33.73 367.76 -8.10 -41.83 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.98 Total: 8.71 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.50 Total: -8.24 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.31 Total: -42.20 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.65 Total: 15.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.73 -8.10 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858827913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.260 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds